RchiOBHm_Chr5g0058031

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000297
Physical Location & Seq
Reverse (-)
62144406 .. 62144759
354 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33475

Sequence Viewer

Length: 354 bp
ATGAAGATCAAGAAAGTGAGTTTCAAATGGTCGGAATTGTACCACGCCAAGTTGAAGAGAATGGAAGAGGCTGAGAAAGAAGCGGGTGAAAGGTTGAAGAATCTGTATCAGAAAGAAAGCGCCCGGAAACGAAGCCGGCAAGTTAGGGTTTTGGATAAGGTTCCACCTTCTTCTTCAAGCAATAAAAGAAGTGGATCCAACGCAGGGAGCAAACTGATGAAGAAAGTGAGGAAAGAGTATCTGAATTGTTTGGAGGTGAAAAATCTTAAAGCTGTGAAGATGAAGAGAACTGCCCAGTGTTCTGGTCTCATCAAAAAGCCAAGAACGACTCTTCAAGCTACTAACGTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

117

Amino Acids

13.51

Weight (kDa)

10.48

Isoelectric Point (pI)

42.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclWI GGATC 2 cut(s) 189, 202
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 5 cut(s) 25, 55, 97, 177, 335
AluBI AGCT 2 cut(s) 272, 338
AluI AGCT 2 cut(s) 272, 338
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 189, 202
AspLEI GCGC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 2 cut(s) 98, 268
BamHI GGATCC 1 cut(s) 194
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 162, 196
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 311
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 295
BsiSI CCGG 2 cut(s) 124, 136
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 6, 194
BspACI CCGC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 162, 196
BspPI GGATC 2 cut(s) 189, 202
BspTNI GGTCTC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 135
BssMI GATC 2 cut(s) 6, 194
Bst6I CTCTTC 4 cut(s) 50, 60, 278, 336
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 9, 197
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 6, 194
BstSCI CCNGG 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 135
Csp6I GTAC 1 cut(s) 40
CviJI RGCY 5 cut(s) 71, 135, 272, 319, 338
CviKI_1 RGCY 5 cut(s) 71, 135, 272, 319, 338
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 8, 196
DpnII GATC 2 cut(s) 6, 194
Eam1104I CTCTTC 4 cut(s) 50, 60, 278, 336
EarI CTCTTC 4 cut(s) 50, 60, 278, 336
Eco31I GGTCTC 1 cut(s) 311
FauI CCCGC 1 cut(s) 76
GlaI GCGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 123
HapII CCGG 2 cut(s) 124, 136
HhaI GCGC 1 cut(s) 122
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 2 cut(s) 100, 328
HpaII CCGG 2 cut(s) 124, 136
HphI GGTGA 2 cut(s) 98, 268
Hpy188I TCNGA 3 cut(s) 34, 111, 243
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 345
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 345
HspAI GCGC 1 cut(s) 120
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
Kzo9I GATC 2 cut(s) 6, 194
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 5 cut(s) 137, 149, 189, 288, 308
MaeII ACGT 1 cut(s) 345
MalI GATC 2 cut(s) 8, 196
MboI GATC 2 cut(s) 6, 194
MflI RGATCY 1 cut(s) 194
MluCI AATT 2 cut(s) 35, 244
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 2 cut(s) 12, 222
MnlI CCTC 3 cut(s) 61, 222, 247
MroNI GCCGGC 1 cut(s) 135
MseI TTAA 1 cut(s) 267
MspI CCGG 2 cut(s) 124, 136
MspR9I CCNGG 1 cut(s) 124
NaeI GCCGGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 124
NdeII GATC 2 cut(s) 6, 194
NgoMIV GCCGGC 1 cut(s) 135
NlaIV GGNNCC 2 cut(s) 162, 196
PdiI GCCGGC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 100
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 162, 196
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SaqAI TTAA 1 cut(s) 267
Sau3AI GATC 2 cut(s) 6, 194
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 124
SetI ASST 7 cut(s) 95, 162, 169, 258, 274, 340, 348
Sse9I AATT 2 cut(s) 35, 244
SsiI CCGC 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 122
TaiI ACGT 1 cut(s) 348
TasI AATT 2 cut(s) 35, 244
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 17, 233, 296
TspRI CASTG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.