Rorug01G0310800

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000297
Physical Location & Seq
Reverse (-)
42807191 .. 42810086
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0310800.1

Sequence Viewer

Length: 951 bp
ATGAAAATGGACCCAGAAAACATGGAGATTGTTCCACCGTCGGATTTGATGGACGACGACGAGATCCACGGCCGTCCTCGCCAGTTATATACAGTTCCAAAGCCTCACAACAATGGCAATAACGTTCCGGGAACCACCAGTGTTCATGAGCTTCTTGAATGTCCTGTTTGCACAAATTCAATGTACCCTCCAATCCATCAGTGCCATAACGGGCATACCCTTTGTTCCACCTGTAAAACAAGAGTGCATAATCGGTGCCCAACTTGTAGACAGGAGCTTGGTGACATAAGGTGTTTAGCACTGGAGAAGGTAGCTGAATCACTTGAACTGCCTTGCAAGTACTGCTCGCTTGGGTGCCCGGAGATATTCCCATATTACAGTAAACTGAAACATGAGGCTGTCTGTAACTTCAGACCATACAACTGTCCTTATGCTGGATCAGACTGCTCTGTTGTTGGGGATATTCCATTCCTTGTTGCTCATCTACGGGATGACCACAAGGTGGACATGCATTCTGGATGTACTTTTAACCATCGTTACGTTAAGTCTAATCCCCGCGAAGTAGAAAATGCCACATGGATGTTAACTGTTTTCCACTGCTTTGGTCAGTACTTCTGTCTCCATTTTGAAGCATTCCAGCTCGGTATGGCTCCTGTTTACATGGCATTTCTACGTTTCATGGGGGATGAAACAGAAGCTCGGAACTACACCTACAGCCTTGAGGTTGGAGGAAATGGCCGAAAGATCATATGGGAAGGAAATCCAAGAAGCATAAGGGATAGCCACAAGAAGGTTAGGGACAGCCATGATGGCCTCATAATACAGCGCAACATGGCGCTTTTCTTCTCTGGTGGGGATAGGAAAGAGCTGAAGCTGCGAGTTACAGGACGGATATGGAAGGAACAGCAGAACCCAGAAGGCGGTGCCTGCATCATACCTCTCTGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

316

Amino Acids

36.05

Weight (kDa)

6.75

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sina_RING PF21362 54 - 89 4.1e-13 E3 ubiquitin-protein ligase sina/sinah, RING finger
Sina_ZnF PF21361 103 - 178 8.1e-30 Sina, zinc finger
Sina_TRAF PF03145 198 - 295 1.9e-34 Sina, TRAF-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 255, 354, 923
AccB7I CCANNNNNTGG 1 cut(s) 502
AccI GTMKAC 1 cut(s) 268
AccII CGCG 1 cut(s) 558
AciI CCGC 2 cut(s) 556, 921
AclI AACGTT 1 cut(s) 123
AclWI GGATC 2 cut(s) 58, 445
AcoI YGGCCR 2 cut(s) 70, 736
AcsI RAATTY 1 cut(s) 175
AcuI CTGAAG 2 cut(s) 394, 890
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 4 cut(s) 185, 341, 523, 611
AfiI CCNNNNNNNGG 4 cut(s) 434, 502, 790, 920
AgsI TTSAA 4 cut(s) 158, 180, 326, 629
AluBI AGCT 7 cut(s) 151, 277, 314, 640, 698, 868, 874
AluI AGCT 7 cut(s) 151, 277, 314, 640, 698, 868, 874
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 2 cut(s) 58, 445
AoxI GGCC 3 cut(s) 70, 736, 811
ApeKI GCWGC 1 cut(s) 874
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 2 cut(s) 828, 838
AspS9I GGNCC 1 cut(s) 10
AsuC2I CCSGG 2 cut(s) 129, 359
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 2 cut(s) 260, 359
BanI GGYRCC 3 cut(s) 255, 354, 923
BbvI GCAGC 1 cut(s) 861
BccI CCATC 4 cut(s) 43, 204, 540, 803
BceAI ACGGC 2 cut(s) 57, 85
BcnI CCSGG 2 cut(s) 129, 359
BcoDI GTCTC 1 cut(s) 623
BfmI CTRYAG 2 cut(s) 712, 943
BfoI RGCGCY 1 cut(s) 839
BglI GCCNNNNNGGC 1 cut(s) 810
BisI GCNGC 1 cut(s) 875
BlsI GCNGC 1 cut(s) 876
BmcAI AGTACT 2 cut(s) 341, 611
Bme1390I CCNGG 2 cut(s) 129, 359
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 6 cut(s) 12, 133, 257, 356, 651, 925
BmrFI CCNGG 2 cut(s) 129, 359
BmsI GCATC 1 cut(s) 939
BpmI CTGGAG 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 2 cut(s) 129, 359
BsaJI CCNNGG 1 cut(s) 67
Bsc4I CCNNNNNNNGG 4 cut(s) 434, 502, 790, 920
Bse1I ACTGG 3 cut(s) 82, 138, 306
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 4 cut(s) 496, 524, 585, 691
BseLI CCNNNNNNNGG 4 cut(s) 434, 502, 790, 920
BseNI ACTGG 3 cut(s) 82, 138, 306
BseSI GKGCMC 2 cut(s) 260, 359
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 3 cut(s) 72, 738, 813
BshNI GGYRCC 3 cut(s) 255, 354, 923
BsiEI CGRYCG 1 cut(s) 73
BsiSI CCGG 2 cut(s) 128, 359
BslFI GGGAC 1 cut(s) 812
BslI CCNNNNNNNGG 4 cut(s) 434, 502, 790, 920
BsmAI GTCTC 1 cut(s) 623
BsmFI GGGAC 1 cut(s) 812
BsmI GAATGC 2 cut(s) 511, 632
BsnI GGCC 3 cut(s) 72, 738, 813
Bsp1286I GDGCHC 2 cut(s) 260, 359
Bsp143I GATC 3 cut(s) 63, 437, 744
BspACI CCGC 2 cut(s) 556, 921
BspANI GGCC 3 cut(s) 72, 738, 813
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 6 cut(s) 12, 133, 257, 356, 651, 925
BspPI GGATC 2 cut(s) 58, 445
BspT107I GGYRCC 3 cut(s) 255, 354, 923
BsrI ACTGG 3 cut(s) 82, 138, 306
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 3 cut(s) 63, 437, 744
Bst4CI ACNGT 5 cut(s) 39, 94, 380, 425, 589
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 347, 928
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 4 cut(s) 496, 524, 585, 691
BstFNI CGCG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 839
BstHHI GCGC 2 cut(s) 828, 838
BstKTI GATC 3 cut(s) 66, 440, 747
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 3 cut(s) 63, 437, 744
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 5 cut(s) 78, 342, 810, 874, 927
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 2 cut(s) 127, 357
BstSFI CTRYAG 2 cut(s) 712, 943
BstSLI GKGCMC 2 cut(s) 260, 359
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 1 cut(s) 63
BstZI CGGCCG 1 cut(s) 70
BsuRI GGCC 3 cut(s) 72, 738, 813
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 4 cut(s) 496, 524, 585, 691
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 4 cut(s) 145, 206, 299, 595
Cac8I GCNNGC 2 cut(s) 347, 928
CciI TCATGA 1 cut(s) 145
CfoI GCGC 2 cut(s) 828, 838
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 4 cut(s) 184, 340, 522, 610
CviAII CATG 9 cut(s) 22, 146, 392, 508, 576, 661, 679, 806, 832
CviQI GTAC 4 cut(s) 184, 340, 522, 610
DpnI GATC 3 cut(s) 65, 439, 746
DpnII GATC 3 cut(s) 63, 437, 744
DraIII CACNNNGTG 1 cut(s) 502
EaeI YGGCCR 2 cut(s) 70, 736
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 10
Eco52I CGGCCG 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 394, 890
EcoT22I ATGCAT 1 cut(s) 513
FaeI CATG 9 cut(s) 25, 149, 395, 511, 579, 664, 682, 809, 835
FaqI GGGAC 1 cut(s) 812
FatI CATG 9 cut(s) 21, 145, 391, 507, 575, 660, 678, 805, 831
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 749
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 875
FokI GGATG 4 cut(s) 503, 531, 592, 698
Fsp4HI GCNGC 1 cut(s) 875
GlaI GCGC 2 cut(s) 827, 837
GluI GCNGC 1 cut(s) 875
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 839
HaeIII GGCC 3 cut(s) 72, 738, 813
HapII CCGG 2 cut(s) 128, 359
HhaI GCGC 2 cut(s) 828, 838
Hin1II CATG 9 cut(s) 25, 149, 395, 511, 579, 664, 682, 809, 835
Hin6I GCGC 2 cut(s) 826, 836
HinP1I GCGC 2 cut(s) 826, 836
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 1 cut(s) 317
HpaI GTTAAC 1 cut(s) 585
HpaII CCGG 2 cut(s) 128, 359
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 5 cut(s) 269, 383, 505, 585, 658
Hpy188I TCNGA 4 cut(s) 43, 413, 442, 702
Hpy188III TCNNGA 3 cut(s) 146, 155, 516
Hpy8I GTNNAC 5 cut(s) 269, 383, 505, 585, 658
Hpy99I CGWCG 3 cut(s) 43, 59, 62
HpyAV CCTTC 5 cut(s) 301, 749, 784, 892, 911
HpyCH4III ACNGT 5 cut(s) 39, 94, 380, 425, 589
HpyCH4IV ACGT 3 cut(s) 123, 540, 673
HpyCH4V TGCA 5 cut(s) 171, 247, 336, 511, 930
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 342, 810, 874, 927
HpySE526I ACGT 3 cut(s) 123, 540, 673
Hsp92II CATG 9 cut(s) 25, 149, 395, 511, 579, 664, 682, 809, 835
HspAI GCGC 2 cut(s) 826, 836
KspAI GTTAAC 1 cut(s) 585
Kzo9I GATC 3 cut(s) 63, 437, 744
LmnI GCTCC 2 cut(s) 274, 655
Lsp1109I GCAGC 1 cut(s) 861
LweI GCATC 1 cut(s) 939
MaeII ACGT 3 cut(s) 123, 540, 673
MaeIII GTNAC 4 cut(s) 281, 404, 536, 880
MalI GATC 3 cut(s) 65, 439, 746
MboI GATC 3 cut(s) 63, 437, 744
MboII GAAGA 1 cut(s) 835
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 260, 359
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 2 cut(s) 21, 706
MnlI CCTC 8 cut(s) 87, 114, 198, 388, 715, 722, 824, 948
Mph1103I ATGCAT 1 cut(s) 513
MseI TTAA 3 cut(s) 528, 543, 584
MslI CAYNNNNRTG 2 cut(s) 111, 578
MspI CCGG 2 cut(s) 128, 359
MspR9I CCNGG 2 cut(s) 129, 359
Mva1269I GAATGC 2 cut(s) 511, 632
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 5 cut(s) 78, 342, 810, 874, 927
NciI CCSGG 2 cut(s) 129, 359
NdeI CATATG 1 cut(s) 749
NdeII GATC 3 cut(s) 63, 437, 744
NlaIII CATG 9 cut(s) 25, 149, 395, 511, 579, 664, 682, 809, 835
NlaIV GGNNCC 6 cut(s) 12, 133, 257, 356, 651, 925
NmuCI GTSAC 1 cut(s) 281
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 1 cut(s) 511
PagI TCATGA 1 cut(s) 145
PctI GAATGC 2 cut(s) 511, 632
PfeI GAWTC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 502
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 876
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 6 cut(s) 12, 133, 257, 356, 651, 925
PspPI GGNCC 1 cut(s) 10
PsrI GAACNNNNNNTAC 2 cut(s) 695, 727
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 4 cut(s) 185, 341, 523, 611
RsaNI GTAC 4 cut(s) 184, 340, 522, 610
RseI CAYNNNNRTG 2 cut(s) 111, 578
SaqAI TTAA 3 cut(s) 528, 543, 584
SatI GCNGC 1 cut(s) 875
Sau3AI GATC 3 cut(s) 63, 437, 744
Sau96I GGNCC 1 cut(s) 10
ScaI AGTACT 2 cut(s) 341, 611
ScrFI CCNGG 2 cut(s) 129, 359
SduI GDGCHC 2 cut(s) 260, 359
SfaNI GCATC 1 cut(s) 939
SfcI CTRYAG 2 cut(s) 712, 943
SinI GGWCC 1 cut(s) 10
SmiMI CAYNNNNRTG 2 cut(s) 111, 578
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 1 cut(s) 175
SsiI CCGC 2 cut(s) 556, 921
StyD4I CCNGG 2 cut(s) 127, 357
TaaI ACNGT 5 cut(s) 39, 94, 380, 425, 589
TaiI ACGT 3 cut(s) 126, 543, 676
TasI AATT 1 cut(s) 175
TatI WGTACW 3 cut(s) 339, 521, 609
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 3 cut(s) 528, 543, 584
Tru9I TTAA 3 cut(s) 528, 543, 584
TscAI CASTG 4 cut(s) 145, 206, 306, 602
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 874
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 4 cut(s) 17, 134, 667, 702
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 4 cut(s) 145, 206, 306, 602
Van91I CCANNNNNTGG 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 268
ZrmI AGTACT 2 cut(s) 341, 611
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.