FvH4_7g20490

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000297
Physical Location & Seq
Reverse (-)
16663709 .. 16664431
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20490.t1

Sequence Viewer

Length: 573 bp
ATGGAAACCACAAAGGCTCCTTCTTTGGTTGAGCTATGCATCGAAACCGCGATAGATAATCGCAAGTATCTTGGGGATGTTGGAGATGTGGATTTCAAGTTTCTTGAGCAGATCTTGTCACACTGTTCCAAGGAGCAGTTGATGCATATAGAGAAGAGAACAAAGGGTAGGGATTTGAGTCCCGTGACCGACAAGTTCTGGAAGAGAATTTTTCGGCAGGAGTTTGGAAGTAAAGCCACTGATGAGTTGATCCAAAATATTGAGGAGGCCAAAAAGATGAAGCAAAAGAAAATCAGTTACACATGGTTGAAATTGTACCAGGCCAAATTGAAGAAATTGGAAGAGGAGGAGAATGAGGTGGGTGAACGGGTGAAACGGCTGTATGAGAAAGACGGTGCTCGGAAGCAAAGTCGCCAGGTTCGGGTTTGTAACAAGGTTGAACCATCACGCAAGAGGAAAAGTAATTTTGGTGGACAAAACCAACCGATGAGCAAAGTGAGGAAACGGTTTCAAAATTGTCTCGAGGTGAGGAATGCCAGAGCTATGAAGACGAAGAAAGCTACTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

191

Amino Acids

22.45

Weight (kDa)

9.81

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elongin_A PF06881 25 - 139 1.9e-19 RNA polymerase II transcription factor SIII (Elongin) subunit A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 50
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 1 cut(s) 207
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 5 cut(s) 97, 310, 331, 440, 512
AjnI CCWGG 2 cut(s) 318, 414
AluBI AGCT 3 cut(s) 34, 542, 560
AluI AGCT 3 cut(s) 34, 542, 560
Alw21I GWGCWC 1 cut(s) 400
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 1 cut(s) 244
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 2 cut(s) 267, 321
ApoI RAATTY 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 374, 382, 538
AvaI CYCGRG 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 400
BccI CCATC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 2 cut(s) 320, 416
BcoDI GTCTC 1 cut(s) 524
BglII AGATCT 1 cut(s) 111
Bme1390I CCNGG 2 cut(s) 320, 416
BmeT110I CYCGRG 1 cut(s) 521
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 2 cut(s) 320, 416
BmsI GCATC 2 cut(s) 48, 132
BpiI GAAGAC 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 421
BseBI CCWGG 2 cut(s) 320, 416
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 421
BseRI GAGGAG 3 cut(s) 278, 359, 362
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 269, 323
BsiHKAI GWGCWC 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 521
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 2 cut(s) 269, 323
BsoBI CYCGRG 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 111, 249
BspACI CCGC 1 cut(s) 48
BspANI GGCC 2 cut(s) 269, 323
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 111, 249
BssT1I CCWWGG 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 320, 416
Bst4CI ACNGT 3 cut(s) 125, 395, 507
Bst6I CTCTTC 3 cut(s) 149, 197, 336
BstAPI GCANNNNNTGC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 2 cut(s) 114, 252
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 2 cut(s) 111, 249
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 2 cut(s) 320, 416
BstSCI CCNGG 2 cut(s) 318, 414
BstUI CGCG 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 2 cut(s) 269, 323
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 121, 237
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 303
CviJI RGCY 8 cut(s) 17, 34, 236, 269, 323, 379, 542, 560
CviKI_1 RGCY 8 cut(s) 17, 34, 236, 269, 323, 379, 542, 560
CviQI GTAC 1 cut(s) 316
DpnI GATC 2 cut(s) 113, 251
DpnII GATC 2 cut(s) 111, 249
Eam1104I CTCTTC 3 cut(s) 149, 197, 336
EarI CTCTTC 3 cut(s) 149, 197, 336
Eco130I CCWWGG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 318, 414
EcoT14I CCWWGG 1 cut(s) 129
EcoT22I ATGCAT 2 cut(s) 41, 147
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 1 cut(s) 306
FaiI YATR 6 cut(s) 37, 147, 149, 304, 384, 545
FaqI GGGAC 1 cut(s) 165
FatI CATG 1 cut(s) 302
FokI GGATG 1 cut(s) 89
HaeIII GGCC 2 cut(s) 269, 323
Hin1II CATG 1 cut(s) 306
HinfI GANTC 1 cut(s) 178
HphI GGTGA 3 cut(s) 374, 382, 538
Hpy166II GTNNAC 2 cut(s) 365, 473
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 3 cut(s) 104, 199, 521
Hpy8I GTNNAC 2 cut(s) 365, 473
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 3 cut(s) 125, 395, 507
HpyCH4V TGCA 2 cut(s) 39, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
Hsp92II CATG 1 cut(s) 306
Kzo9I GATC 2 cut(s) 111, 249
LmnI GCTCC 2 cut(s) 22, 133
LpnPI CCDG 7 cut(s) 184, 203, 305, 332, 401, 428, 550
LweI GCATC 2 cut(s) 48, 132
MaeIII GTNAC 4 cut(s) 117, 184, 296, 428
MalI GATC 2 cut(s) 113, 251
MboI GATC 2 cut(s) 111, 249
MboII GAAGA 6 cut(s) 166, 214, 343, 353, 559, 565
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 7 cut(s) 207, 311, 326, 335, 463, 514, 565
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 9 cut(s) 256, 259, 337, 340, 349, 447, 492, 517, 522
Mph1103I ATGCAT 2 cut(s) 41, 147
MseI TTAA 1 cut(s) 571
MspR9I CCNGG 2 cut(s) 320, 416
Mva1269I GAATGC 1 cut(s) 538
MvaI CCWGG 2 cut(s) 320, 416
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 142
NdeII GATC 2 cut(s) 111, 249
NlaIII CATG 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 117, 184
NsiI ATGCAT 2 cut(s) 41, 147
PaeR7I CTCGAG 1 cut(s) 521
PctI GAATGC 1 cut(s) 538
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 318, 414
PspGI CCWGG 2 cut(s) 318, 414
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 571
Sau3AI GATC 2 cut(s) 111, 249
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 320, 416
SduI GDGCHC 1 cut(s) 400
SetI ASST 7 cut(s) 36, 360, 420, 438, 528, 544, 562
SfaNI GCATC 2 cut(s) 48, 132
Sfr274I CTCGAG 1 cut(s) 521
SlaI CTCGAG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 104, 521
SmoI CTYRAG 2 cut(s) 104, 521
Sse9I AATT 7 cut(s) 207, 311, 326, 335, 463, 514, 565
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 318, 414
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 3 cut(s) 125, 395, 507
TaqI TCGA 2 cut(s) 42, 522
TaqII GACCGA 1 cut(s) 203
TasI AATT 7 cut(s) 207, 311, 326, 335, 463, 514, 565
Tru1I TTAA 1 cut(s) 571
Tru9I TTAA 1 cut(s) 571
TscAI CASTG 2 cut(s) 128, 244
TseFI GTSAC 2 cut(s) 117, 184
Tsp45I GTSAC 2 cut(s) 117, 184
TspDTI ATGAA 2 cut(s) 293, 560
TspRI CASTG 2 cut(s) 128, 244
XapI RAATTY 1 cut(s) 207
XhoI CTCGAG 1 cut(s) 521
Zsp2I ATGCAT 2 cut(s) 41, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.