Rmu_sc0001944.1_g000004

Transcription elongation factor B polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001944.1
OG0000297
Physical Location & Seq
Reverse (-)
8624 .. 9064
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001944.1_g000004.1.cds

Sequence Viewer

Length: 441 bp
ctgactccgatcaccgataagctgtggaagaagttcttccagagagagttcggtggcaaagccactgataaggtgatcgaaaagatgaagatcaagaaagtgaattacaagtggtcggagttgtaccaggccaagtccaagagagtggaaaaggccgagaaagaagtcggtgaaagattgaagaagctgtatgagaaagaagtcgcccataaacaaagccggcgagttagggttttggacaaggttccaccttctctgtcaagcaataaaagaattggctccaacaaagggagcaaactgctgaacagagtgaggaaaaactatcgaaatagtctggaggtcagaaatattgaagctatgaagatgaagagaactgctgccaagtgttccagtttgatcaaaaaaccaagaacaactaatcaagctatgaacgtcttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elongin_A

Protein Analysis

146

Amino Acids

17.14

Weight (kDa)

10.52

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42780 AT2G42780
fragaria_vesca FvH4_6g37640 FvH4_6g37640 FvH4_7g18970 FvH4_7g19430 FvH4_7g20490
malus_domestica MD04G1219900.v1.1 MD09G1156600.v1.1 MD11G1064800.v1.1 MD17G1143100.v1.1
prunus_persica Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1 Prupe.3G169700_v2.0.a1
pyrus_communis pycom09g07530 pycom11g05390 pycom12g21760 pycom17g13620
rosa_chinensis RchiOBHm_Chr1g0363261 RchiOBHm_Chr1g0363291 RchiOBHm_Chr1g0363311 RchiOBHm_Chr1g0363471 RchiOBHm_Chr1g0363891 RchiOBHm_Chr1g0377321 RchiOBHm_Chr2g0097481 RchiOBHm_Chr2g0101011 RchiOBHm_Chr2g0137701 RchiOBHm_Chr2g0150641 RchiOBHm_Chr2g0150701 RchiOBHm_Chr3g0476421 RchiOBHm_Chr5g0057921 RchiOBHm_Chr5g0057931 RchiOBHm_Chr5g0057951 RchiOBHm_Chr5g0057981 RchiOBHm_Chr5g0058001 RchiOBHm_Chr5g0058031 RchiOBHm_Chr5g0058051 RchiOBHm_Chr5g0058081 RchiOBHm_Chr5g0058101
rosa_laevigata RLG00000017036 RLG00000019670 RLG00000020502 RLG00000023768 RLG00000027563 RLG00000027575 RLG00000027577 RLG00000027578 RLG00000034860 RLG00000035193
rosa_multiflora Rmu_co8175074.1_g000001 Rmu_sc0000367.1_g000008 Rmu_sc0001862.1_g000004 Rmu_sc0001944.1_g000004 Rmu_sc0002483.1_g000004 Rmu_sc0004027.1_g000010 Rmu_sc0004458.1_g000001 Rmu_sc0004556.1_g000009 Rmu_sc0007226.1_g000008 Rmu_sc0011095.1_g000003 Rmu_sc0027954.1_g000002 Rmu_sc0028722.1_g000001
rosa_roxburghii Rroxscaffold_1G00022510 Rroxscaffold_1G00028200 Rroxscaffold_2G00097050 Rroxscaffold_2G00106910 Rroxscaffold_2G00106930 Rroxscaffold_2G00141650 Rroxscaffold_4G00293150 Rroxscaffold_4G00293320 Rroxscaffold_6G00405280
rosa_rugosa Rorug01G0305900 Rorug01G0306000 Rorug01G0306200 Rorug01G0307100 Rorug01G0307100 Rorug01G0307200 Rorug01G0310800 Rorug01G0402700 Rorug02G0095200 Rorug02G0344100.1 Rorug02G0421900 Rorug02G0422000 Rorug02G0422100 Rorug02G0422200 Rorug03G0154300 Rorug05G0310800 Rorug05G0310900 Rorug05G0337400
rosa_samantha Rh1AG314800 Rh1AG315000 Rh1AG316200 Rh1AG318700 Rh1AG420300 Rh1DG309100 Rh1DG309300 Rh1DG310600 Rh1DG313200 Rh1DG410200 Rh2AG142500 Rh2AG392100 Rh2AG481600 Rh2BG147600 Rh2BG399400 Rh2BG399600 Rh2BG493800 Rh2DG502800 Rh3BG237100 Rh3CG231600 Rh5BG390600 Rh5DG405200
rosa_wichuraiana Rw1G027900 Rw1G027910 Rw1G028000 Rw1G036850 Rw2G011180 Rw2G032110 Rw2G032120 Rw2G039370 Rw2G039510 Rw3G018680 Rw5G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 2 cut(s) 181, 353
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 4 cut(s) 22, 187, 356, 425
AluI AGCT 4 cut(s) 22, 187, 356, 425
AoxI GGCC 2 cut(s) 129, 153
ApeKI GCWGC 1 cut(s) 377
Asp700I GAANNNNTTC 2 cut(s) 32, 35
AsuHPI GGTGA 3 cut(s) 4, 85, 182
BbvI GCAGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 396
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 246, 280
BmrFI CCNGG 1 cut(s) 128
BpmI CTGGAG 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 1 cut(s) 128
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 2 cut(s) 131, 155
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 288
BsnI GGCC 2 cut(s) 131, 155
Bsp143I GATC 4 cut(s) 9, 75, 90, 396
BspANI GGCC 2 cut(s) 131, 155
BspLI GGNNCC 2 cut(s) 246, 280
BsrFI RCCGGY 1 cut(s) 219
BsrI ACTGG 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 219
BssMI GATC 4 cut(s) 9, 75, 90, 396
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 221
BstKTI GATC 4 cut(s) 12, 78, 93, 399
BstMBI GATC 4 cut(s) 9, 75, 90, 396
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 145
BsuRI GGCC 2 cut(s) 131, 155
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 219
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 9 cut(s) 22, 62, 131, 155, 187, 219, 279, 356, 425
CviKI_1 RGCY 9 cut(s) 22, 62, 131, 155, 187, 219, 279, 356, 425
CviQI GTAC 1 cut(s) 124
DpnI GATC 4 cut(s) 11, 77, 92, 398
DpnII GATC 4 cut(s) 9, 75, 90, 396
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 126
FaiI YATR 4 cut(s) 192, 210, 359, 428
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FbaI TGATCA 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 378
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 2 cut(s) 131, 155
HapII CCGG 1 cut(s) 220
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 220
HphI GGTGA 3 cut(s) 4, 85, 182
Hpy188I TCNGA 3 cut(s) 9, 118, 344
Hpy188III TCNNGA 3 cut(s) 40, 94, 335
HpyAV CCTTC 1 cut(s) 261
HpyCH4IV ACGT 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 432
KroI GCCGGC 1 cut(s) 219
KroNI GCCGGC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 4 cut(s) 9, 75, 90, 396
LmnI GCTCC 2 cut(s) 284, 291
LpnPI CCDG 6 cut(s) 53, 113, 140, 233, 320, 403
Lsp1109I GCAGC 1 cut(s) 364
MaeII ACGT 1 cut(s) 432
MalI GATC 4 cut(s) 11, 77, 92, 398
MboI GATC 4 cut(s) 9, 75, 90, 396
MboII GAAGA 6 cut(s) 28, 40, 100, 193, 373, 379
MluCI AATT 2 cut(s) 103, 273
MmeI TCCRAC 2 cut(s) 96, 306
MnlI CCTC 2 cut(s) 306, 331
MroNI GCCGGC 1 cut(s) 219
MroXI GAANNNNTTC 2 cut(s) 32, 35
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 221
NdeII GATC 4 cut(s) 9, 75, 90, 396
NgoMIV GCCGGC 1 cut(s) 219
NlaIV GGNNCC 2 cut(s) 246, 280
NmeAIII GCCGAG 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 221
PdmI GAANNNNTTC 2 cut(s) 32, 35
PkrI GCNGC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 246, 280
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 4 cut(s) 9, 75, 90, 396
ScrFI CCNGG 1 cut(s) 128
SetI ASST 9 cut(s) 24, 75, 189, 246, 253, 342, 358, 427, 435
Sse9I AATT 2 cut(s) 103, 273
SspI AATATT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 78, 325
TasI AATT 2 cut(s) 103, 273
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 101, 374, 380
TspRI CASTG 1 cut(s) 70
XmnI GAANNNNTTC 2 cut(s) 32, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.