Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Forward (+)

4807716 .. 4808049

Gene Structure 334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG062300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCGTAAGAAGAAGCAGATTCAAGAGCTCCAGCATGAGGTGGACCAGCTCTATGTTGCAAATAATCAGCTATCTGAGAAGCTTATCCAAATGTTAGAGGCAAACCAGCAGATTCTTCAGGAGAATGCTCAGCTAAAAGAGAGAGTTTCTTCCCTTCAAGTCACCTTTGCTGATCTGATTGATATGAGAGAAATTTCTAATAACTGGATTAGAGATATTCAGTATTTTGGGGCCATGTCCTTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

82

Amino Acids

9.73

Weight (kDa)

5.26

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	2 cut(s)	101, 226
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	23, 158
AluBI	AGCT	5 cut(s)	28, 49, 70, 82, 133
AluI	AGCT	5 cut(s)	28, 49, 70, 82, 133
Alw21I	GWGCWC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	43, 231
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	43, 231
BmiI	GGNNCC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	66, 143
BseNI	ACTGG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	2 cut(s)	67, 142
BspLI	GGNNCC	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	1 cut(s)	172
BstDEI	CTNAG	2 cut(s)	75, 129
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	43, 231
CviAII	CATG	2 cut(s)	35, 235
CviJI	RGCY	6 cut(s)	28, 49, 70, 82, 133, 233
CviKI_1	RGCY	6 cut(s)	28, 49, 70, 82, 133, 233
DdeI	CTNAG	2 cut(s)	75, 129
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	2 cut(s)	101, 226
EcoICRI	GAGCTC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	38, 238
FaiI	YATR	4 cut(s)	36, 54, 185, 236
FatI	CATG	2 cut(s)	34, 234
FriOI	GRGCYC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	38, 238
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	2 cut(s)	19, 112
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	76, 177
Hpy188III	TCNNGA	2 cut(s)	23, 119
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	75, 129
Hsp92II	CATG	2 cut(s)	38, 238
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	44, 59, 104, 119, 190
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	22, 107, 141
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	2 cut(s)	31, 91
Mva1269I	GAATGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	38, 238
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	160
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	19, 112
Psp124BI	GAGCTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	43, 231
SacI	GAGCTC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	43, 231
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	7 cut(s)	30, 42, 51, 72, 84, 135, 167
SgeI	CNNG	8 cut(s)	35, 43, 47, 58, 118, 131, 170, 217
SinI	GGWCC	1 cut(s)	43
Sse9I	AATT	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	30
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	19, 112
TseFI	GTSAC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.