Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Reverse (-)

28028189 .. 28028785

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATACAAATGAATCAAAGGGGAACCATTACTTACGTAATCAGGCAGTTGAAGTTGCGGAGAACCATTCACTTCTATCCCTTCAAAACCCTACTCACAATCCAGATTCCGTAACATTTTACCCGACTCGGATTTTCTCCATGTCTCATATCCATGATTTTTCGTCGAACGCCTCTTCTCTTAACAATGACACTGTTTTTGATGAAGCAGCTGCTGCAGGGGAGCAAGGCCTTACCTATGAAAAAAGGATCAAGAGAATGATTTCCAACAGGGAATCTGCACGAAGGTCACGAATGCGGAAGAAGAAGCAGATTGAAGAGCTGCAGTATCAGGTGGACCAGCTCCACATCACAAATCGTCAGCTCTCCGAGAAGCTCATCCAACTGTTGGAGGGAAATCAACAGATTCTCCAGGAGAATGCTCAACTGAAAGAAAGAGTTTCATCTCTTCAAGTCATCCTTTCGGATCTGATATCACCTCTGCAGCGAAATGCAGAGATGCCACCACCAACACCCAAATCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

176

Amino Acids

20.04

Weight (kDa)

7.03

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	81 - 129	5e-09	Basic region leucine zipper
bZIP_1	PF00170	82 - 140	5.1e-14	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	388
AciI	CCGC	2 cut(s)	59, 298
AclWI	GGATC	2 cut(s)	257, 474
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	4 cut(s)	53, 86, 317, 452
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	5 cut(s)	212, 322, 343, 364, 376
AluI	AGCT	5 cut(s)	212, 322, 343, 364, 376
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	257, 474
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	5 cut(s)	209, 212, 215, 322, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	468
AvaII	GGWCC	1 cut(s)	337
BbvI	GCAGC	5 cut(s)	199, 202, 221, 309, 496
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	150
BfmI	CTRYAG	3 cut(s)	216, 323, 482
BisI	GCNGC	5 cut(s)	210, 213, 216, 323, 485
BlsI	GCNGC	5 cut(s)	211, 214, 217, 324, 486
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	413
BseGI	GGATG	2 cut(s)	378, 456
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseXI	GCAGC	5 cut(s)	199, 202, 221, 309, 496
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	150
BsmI	GAATGC	2 cut(s)	300, 424
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	249, 466
BspACI	CCGC	2 cut(s)	59, 298
BspANI	GGCC	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	26
BspMAI	CTGCAG	3 cut(s)	220, 327, 486
BspPI	GGATC	2 cut(s)	257, 474
BspQI	GCTCTTC	1 cut(s)	312
BssMI	GATC	2 cut(s)	249, 466
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	2 cut(s)	196, 387
Bst6I	CTCTTC	3 cut(s)	181, 312, 453
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	378, 456
BstKTI	GATC	2 cut(s)	252, 469
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	249, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	3 cut(s)	216, 323, 482
BstSNI	TACGTA	1 cut(s)	38
BstV1I	GCAGC	5 cut(s)	199, 202, 221, 309, 496
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	378, 456
BtsIMutI	CAGTG	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	337
CviAII	CATG	2 cut(s)	142, 155
CviJI	RGCY	6 cut(s)	212, 231, 322, 343, 364, 376
CviKI_1	RGCY	6 cut(s)	212, 231, 322, 343, 364, 376
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	2 cut(s)	251, 468
DpnII	GATC	2 cut(s)	249, 466
Eam1104I	CTCTTC	3 cut(s)	181, 312, 453
EarI	CTCTTC	3 cut(s)	181, 312, 453
Eco105I	TACGTA	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	1 cut(s)	474
FaeI	CATG	2 cut(s)	145, 158
FaiI	YATR	4 cut(s)	143, 150, 156, 240
FalI	AAGNNNNNCTT	2 cut(s)	444, 476
FatI	CATG	2 cut(s)	141, 154
Fnu4HI	GCNGC	5 cut(s)	210, 213, 216, 323, 485
FokI	GGATG	2 cut(s)	365, 443
Fsp4HI	GCNGC	5 cut(s)	210, 213, 216, 323, 485
GluI	GCNGC	5 cut(s)	210, 213, 216, 323, 485
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	145, 158
HinfI	GANTC	5 cut(s)	14, 107, 127, 275, 406
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	132, 370, 466, 471
Hpy188III	TCNNGA	3 cut(s)	104, 253, 291
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	92, 279
HpyCH4III	ACNGT	2 cut(s)	196, 387
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	5 cut(s)	218, 281, 325, 484, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	145, 158
Kzo9I	GATC	2 cut(s)	249, 466
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	223, 348
LpnPI	CCDG	8 cut(s)	29, 117, 204, 256, 317, 353, 398, 425
Lsp1109I	GCAGC	5 cut(s)	199, 202, 221, 309, 496
LweI	GCATC	1 cut(s)	489
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	2 cut(s)	112, 288
MalI	GATC	2 cut(s)	251, 468
MboI	GATC	2 cut(s)	249, 466
MboII	GAAGA	5 cut(s)	168, 313, 316, 329, 440
MflI	RGATCY	1 cut(s)	466
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	3 cut(s)	291, 369, 406
MnlI	CCTC	3 cut(s)	184, 385, 489
MroXI	GAANNNNTTC	1 cut(s)	262
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	413
Mva1269I	GAATGC	2 cut(s)	300, 424
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	249, 466
NlaIII	CATG	2 cut(s)	145, 158
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	2 cut(s)	300, 424
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	14, 107, 275, 406
PflMI	CCANNNNNTGG	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	5 cut(s)	211, 214, 217, 324, 486
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	3 cut(s)	220, 327, 486
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	5 cut(s)	210, 213, 216, 323, 485
Sau3AI	GATC	2 cut(s)	249, 466
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	3 cut(s)	216, 323, 482
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	153
SnaBI	TACGTA	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	2 cut(s)	59, 298
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	196, 387
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	167, 521
TfiI	GAWTC	4 cut(s)	14, 107, 275, 406
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	5 cut(s)	209, 212, 215, 322, 484
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	4 cut(s)	27, 219, 255, 432
TspGWI	ACGGA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.