Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Forward (+)

22005788 .. 22006384

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATGCAAATGAATCAAAGGGAAACCATTACTTACGTAATCAGGTTCCTCCATCTCAACTTATCCCCAGTACCAAACAATCCCGTCTTTACTCAAGTCCCCAAAATATGCAGGCAGTTGAAGTTGCGGAGAACCATTCACTTCTATCCCTTCAAAACCCTACTCACAATCCAGATTCCGTAACATTTTACCCGACTCGGATTTTCTCCACGTCTCATATCCATGATTTTTCGTCGAACGCCTCTTCTCTTAACAATGACACTGTTTTTGATGAAGCAGCTGCTGCCGGGGAGCAAGGCCTTACCTATGAAAAAAGGATCAAGAGAATGATTTCCAACAGGGAATCTGCACGAAGGTCACGAATGCGGAAGAAGAAGCAGATTGAGGAACTGCAGTATCAGGTGGACCAGCTCCACATCACAAATCGTCAGCTCTCCGAGAAGCTCATCCAACTGTTGGAGGGAAATCAACAGATTCTCCAGGAGAATGCTCAACTGAAAGAAAGAGTTTCATCGCTTCAAGTCATCCTTTCGGATCTGATATCACCTCTGCAGCGAAATGCAGAGATGCCGCCACCAACACCCAAATCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

198

Amino Acids

22.55

Weight (kDa)

8.86

Isoelectric Point (pI)

68.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	104 - 152	5.8e-09	Basic region leucine zipper
bZIP_1	PF00170	105 - 163	6.7e-14	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	457
AciI	CCGC	3 cut(s)	128, 367, 572
AclWI	GGATC	2 cut(s)	326, 543
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	122, 155, 521
AjiI	CACGTC	1 cut(s)	213
AjnI	CCWGG	1 cut(s)	480
AluBI	AGCT	4 cut(s)	281, 412, 433, 445
AluI	AGCT	4 cut(s)	281, 412, 433, 445
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	326, 543
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	4 cut(s)	278, 281, 284, 553
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BbvI	GCAGC	4 cut(s)	268, 271, 290, 565
BccI	CCATC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	482
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	219
BfmI	CTRYAG	2 cut(s)	392, 551
BisI	GCNGC	5 cut(s)	279, 282, 285, 554, 572
BlsI	GCNGC	5 cut(s)	280, 283, 286, 555, 573
Bme1390I	CCNGG	2 cut(s)	289, 482
Bme18I	GGWCC	1 cut(s)	406
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	289, 482
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	289
BsaAI	YACGTR	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	10, 447, 525
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	4 cut(s)	268, 271, 290, 565
BsgI	GTGCAG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	219
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	2 cut(s)	369, 493
BsnI	GGCC	1 cut(s)	300
Bsp143I	GATC	2 cut(s)	318, 535
BspACI	CCGC	3 cut(s)	128, 367, 572
BspANI	GGCC	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	2 cut(s)	396, 555
BspPI	GGATC	2 cut(s)	326, 543
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	318, 535
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	2 cut(s)	265, 456
Bst6I	CTCTTC	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	10, 447, 525
BstKTI	GATC	2 cut(s)	321, 538
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	318, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	287, 480
BstSFI	CTRYAG	2 cut(s)	392, 551
BstSNI	TACGTA	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	268, 271, 290, 565
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	300
BtgZI	GCGATG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	10, 447, 525
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	5 cut(s)	281, 300, 412, 433, 445
CviKI_1	RGCY	5 cut(s)	281, 300, 412, 433, 445
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	2 cut(s)	320, 537
DpnII	GATC	2 cut(s)	318, 535
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco105I	TACGTA	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	543
Eco47I	GGWCC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	543
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	1 cut(s)	227
FaiI	YATR	4 cut(s)	110, 219, 225, 309
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	279, 282, 285, 554, 572
FokI	GGATG	3 cut(s)	17, 434, 512
Fsp4HI	GCNGC	5 cut(s)	279, 282, 285, 554, 572
GluI	GCNGC	5 cut(s)	279, 282, 285, 554, 572
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	1 cut(s)	227
HinfI	GANTC	5 cut(s)	14, 176, 196, 344, 475
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	537
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	4 cut(s)	201, 439, 535, 540
Hpy188III	TCNNGA	3 cut(s)	173, 322, 360
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	2 cut(s)	161, 348
HpyCH4III	ACNGT	2 cut(s)	265, 456
HpyCH4IV	ACGT	2 cut(s)	37, 212
HpyCH4V	TGCA	6 cut(s)	8, 112, 350, 394, 553, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	2 cut(s)	37, 212
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	2 cut(s)	318, 535
LmnI	GCTCC	2 cut(s)	292, 417
Lsp1109I	GCAGC	4 cut(s)	268, 271, 290, 565
LweI	GCATC	1 cut(s)	558
MaeII	ACGT	2 cut(s)	37, 212
MaeIII	GTNAC	2 cut(s)	181, 357
MalI	GATC	2 cut(s)	320, 537
MboI	GATC	2 cut(s)	318, 535
MboII	GAAGA	3 cut(s)	237, 382, 385
MflI	RGATCY	1 cut(s)	535
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	3 cut(s)	360, 438, 475
MnlI	CCTC	5 cut(s)	60, 253, 379, 454, 558
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	289, 482
Mva1269I	GAATGC	2 cut(s)	369, 493
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	318, 535
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	358
PctI	GAATGC	2 cut(s)	369, 493
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	14, 176, 344, 475
PflMI	CCANNNNNTGG	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	5 cut(s)	280, 283, 286, 555, 573
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	2 cut(s)	396, 555
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	5 cut(s)	279, 282, 285, 554, 572
Sau3AI	GATC	2 cut(s)	318, 535
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	289, 482
SfaNI	GCATC	1 cut(s)	558
SfcI	CTRYAG	2 cut(s)	392, 551
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SnaBI	TACGTA	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	3 cut(s)	128, 367, 572
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	2 cut(s)	287, 480
TaaI	ACNGT	2 cut(s)	265, 456
TaiI	ACGT	2 cut(s)	40, 215
TaqI	TCGA	2 cut(s)	236, 590
TauI	GCSGC	1 cut(s)	574
TfiI	GAWTC	4 cut(s)	14, 176, 344, 475
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	4 cut(s)	278, 281, 284, 553
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	4 cut(s)	27, 288, 324, 501
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.