Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Forward (+)

4139260 .. 4139604

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG062600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTCACAATTCAATGACTTGTCACCATACACCTACACTGGTAGCACTAACACTGGTTTTGATAAAACTGCCGCAGCGGAGCAAAGCCTTAACCATGAAAGAAGGCTCAAGAGACTGACTTCCAACAGGGAATCTGCACGAAGGTCGCGAATGCGTAAGAAGAAGCAGATTCAAGAGCTCCAGCATGAGGTGGAGCAGCTCTATGTTGCAAATAATCAGCTATCTGAGAAGCTTATCCAAATGTTAGAGGTAAACCAGCAGATTCTTCAGGGGAATGCTCAGCTAAAAGAGCGAGTTTCTTCCCTTCAAGTCACCTTTGCTGATCTCATTGATGTAACCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

114

Amino Acids

13.23

Weight (kDa)

9.39

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	33 - 81	6.8e-10	Basic region leucine zipper
bZIP_1	PF00170	34 - 90	3.6e-12	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AciI	CCGC	2 cut(s)	72, 77
AcuI	CTGAAG	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	13, 173, 308
AluBI	AGCT	5 cut(s)	178, 199, 220, 232, 283
AluI	AGCT	5 cut(s)	178, 199, 220, 232, 283
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	74, 196
AsuHPI	GGTGA	2 cut(s)	15, 304
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	86, 208
BcgI	CGANNNNNNTGC	2 cut(s)	126, 160
BcoDI	GTCTC	1 cut(s)	106
BisI	GCNGC	3 cut(s)	72, 75, 197
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	3 cut(s)	73, 76, 198
BpmI	CTGGAG	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	43, 58
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	216, 293
BseNI	ACTGG	2 cut(s)	43, 58
BseXI	GCAGC	2 cut(s)	86, 208
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	106
BsmI	GAATGC	2 cut(s)	156, 280
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	322
Bsp1720I	GCTNAGC	1 cut(s)	279
Bsp68I	TCGCGA	1 cut(s)	148
BspACI	CCGC	2 cut(s)	72, 77
BspCNI	CTCAG	2 cut(s)	217, 292
BspFNI	CGCG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	43, 58
BssMI	GATC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	225, 279
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	86, 208
BtsIMutI	CAGTG	2 cut(s)	36, 51
BtuMI	TCGCGA	1 cut(s)	148
CviAII	CATG	2 cut(s)	95, 185
CviJI	RGCY	7 cut(s)	87, 106, 178, 199, 220, 232, 283
CviKI_1	RGCY	7 cut(s)	87, 106, 178, 199, 220, 232, 283
DdeI	CTNAG	2 cut(s)	225, 279
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	98, 188
FaiI	YATR	4 cut(s)	28, 96, 186, 204
FatI	CATG	2 cut(s)	94, 184
Fnu4HI	GCNGC	3 cut(s)	72, 75, 197
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	72, 75, 197
GluI	GCNGC	3 cut(s)	72, 75, 197
GsuI	CTGGAG	1 cut(s)	164
Hin1II	CATG	2 cut(s)	98, 188
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	3 cut(s)	131, 169, 262
HphI	GGTGA	2 cut(s)	15, 304
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	3 cut(s)	109, 147, 173
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	96, 135, 314
HpyCH4V	TGCA	2 cut(s)	137, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	2 cut(s)	225, 279
Hsp92II	CATG	2 cut(s)	98, 188
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	79, 183, 193
LpnPI	CCDG	6 cut(s)	24, 39, 112, 194, 254, 269
Lsp1109I	GCAGC	2 cut(s)	86, 208
MaeIII	GTNAC	4 cut(s)	3, 21, 310, 334
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	3 cut(s)	172, 257, 291
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	181, 241
MseI	TTAA	2 cut(s)	90, 343
MspA1I	CMGCKG	1 cut(s)	77
Mva1269I	GAATGC	2 cut(s)	156, 280
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	289
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	98, 188
NmuCI	GTSAC	3 cut(s)	3, 21, 310
NruI	TCGCGA	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PctI	GAATGC	2 cut(s)	156, 280
PfeI	GAWTC	3 cut(s)	131, 169, 262
PkrI	GCNGC	3 cut(s)	73, 76, 198
Psp124BI	GAGCTC	1 cut(s)	180
RruI	TCGCGA	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	90, 343
SatI	GCNGC	3 cut(s)	72, 75, 197
Sau3AI	GATC	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	2 cut(s)	72, 77
SstI	GAGCTC	1 cut(s)	180
TasI	AATT	1 cut(s)	8
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	131, 169, 262
Tru1I	TTAA	2 cut(s)	90, 343
Tru9I	TTAA	2 cut(s)	90, 343
TscAI	CASTG	2 cut(s)	43, 58
TseFI	GTSAC	3 cut(s)	3, 21, 310
TseI	GCWGC	2 cut(s)	74, 196
Tsp45I	GTSAC	3 cut(s)	3, 21, 310
TspDTI	ATGAA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	43, 58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.