RLG00000005012
BZIP Family

Ocs element-binding factor 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
64345680 .. 64346006
327 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005012

Sequence Viewer

Length: 327 bp
ATGTCACAATTCAATGACTTGTCACCATACACCTACACTGGTAGCACTAACACTGGTTTTGATAAAACTGCTGCAGCGGAGCAAAGCCTTAACGATGAAAGAAGGCTCAAGAGACTGACTTCCAACACGGAATCTGCACGAAGGTTGCGAATGCGTAAGAAGAAGCAGATTCAAGAGCTCCAGCATGAGGTGGAGCAGCTCTATGTTGCAAATAATCAGCTATCTGAGAAGCTTATCCAAATGTTAGAGGTAAACCAGCAGATTCTTCAGGAGAATGCTCAGCTAAAAGAGAAGTTTCTTCCCTTCAAGTCACCTCTGCTGATCTGA

Protein Analysis

109

Amino Acids

12.64

Weight (kDa)

9.3

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 32 - 81 2.7e-09 Basic region leucine zipper
bZIP_1 PF00170 34 - 92 5.8e-10 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 3 cut(s) 13, 173, 307
AluBI AGCT 5 cut(s) 178, 199, 220, 232, 283
AluI AGCT 5 cut(s) 178, 199, 220, 232, 283
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 71, 74, 196
AsuHPI GGTGA 2 cut(s) 15, 303
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 58, 86, 208
BcoDI GTCTC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 3 cut(s) 72, 75, 197
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 3 cut(s) 73, 76, 198
BpmI CTGGAG 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 43, 58
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 216, 293
BseNI ACTGG 2 cut(s) 43, 58
BseXI GCAGC 3 cut(s) 58, 86, 208
BsgI GTGCAG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 106
BsmI GAATGC 2 cut(s) 156, 280
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 321
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 217, 292
BspMAI CTGCAG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 43, 58
BssMI GATC 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 225, 279
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 58, 86, 208
BtsIMutI CAGTG 2 cut(s) 36, 51
CviAII CATG 1 cut(s) 185
CviJI RGCY 7 cut(s) 87, 106, 178, 199, 220, 232, 283
CviKI_1 RGCY 7 cut(s) 87, 106, 178, 199, 220, 232, 283
DdeI CTNAG 2 cut(s) 225, 279
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 1 cut(s) 188
FaiI YATR 3 cut(s) 28, 186, 204
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 72, 75, 197
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 72, 75, 197
GluI GCNGC 3 cut(s) 72, 75, 197
GsuI CTGGAG 1 cut(s) 164
Hin1II CATG 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 3 cut(s) 131, 169, 262
HphI GGTGA 2 cut(s) 15, 303
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 226, 326
Hpy188III TCNNGA 3 cut(s) 109, 173, 269
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 3 cut(s) 96, 135, 313
HpyCH4V TGCA 3 cut(s) 74, 137, 209
HpyF3I CTNAG 2 cut(s) 225, 279
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 79, 183, 193
LpnPI CCDG 5 cut(s) 24, 39, 194, 254, 269
Lsp1109I GCAGC 3 cut(s) 58, 86, 208
MaeIII GTNAC 3 cut(s) 3, 21, 309
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 3 cut(s) 172, 257, 290
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 181, 241, 324
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 77
Mva1269I GAATGC 2 cut(s) 156, 280
NdeII GATC 1 cut(s) 321
NlaIII CATG 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 3, 21, 309
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PctI GAATGC 2 cut(s) 156, 280
PfeI GAWTC 3 cut(s) 131, 169, 262
PkrI GCNGC 3 cut(s) 73, 76, 198
Psp124BI GAGCTC 1 cut(s) 180
PstI CTGCAG 1 cut(s) 76
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 3 cut(s) 72, 75, 197
Sau3AI GATC 1 cut(s) 321
SduI GDGCHC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 77
SstI GAGCTC 1 cut(s) 180
TasI AATT 1 cut(s) 8
TfiI GAWTC 3 cut(s) 131, 169, 262
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 2 cut(s) 43, 58
TseFI GTSAC 3 cut(s) 3, 21, 309
TseI GCWGC 3 cut(s) 71, 74, 196
Tsp45I GTSAC 3 cut(s) 3, 21, 309
TspDTI ATGAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 43, 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.