Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007533.1

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Forward (+)

12515 .. 12955

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007533.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggattcaaatgaatcaaagccacaccactactcagctaatcaaactattccatctcaattcctctccacaatttctcatactcagattttccccatgtcacaattcaatgacttgtccccatacaccaccactggtagcactaacactggttttgatgaaactgctgcagcgaagcaaagccttaaccatgaaagaaggctccagagactgacttccaacagggaatctgcacgaaggtcgcgaatgcgtaagaagaagcagattcaagagctccagcatgaggtggaccagctctatgttgcaaataatcagctatctgagaagcttatccaaatgttagaggcaaaccagcagattcttcaggagaatgctcagctaaaagagagagtttcttcccttcaagtcacctttgctgatctgattgatgtaaccttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

146

Amino Acids

16.83

Weight (kDa)

6.98

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	9, 109, 269, 404
AluBI	AGCT	6 cut(s)	38, 274, 295, 316, 328, 379
AluI	AGCT	6 cut(s)	38, 274, 295, 316, 328, 379
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	202
AlwNI	CAGNNNCTG	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	167, 170
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	154, 182
BccI	CCATC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	222, 256
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	2 cut(s)	168, 171
BlpI	GCTNAGC	1 cut(s)	375
BlsI	GCNGC	2 cut(s)	169, 172
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	203
BpmI	CTGGAG	2 cut(s)	188, 260
Bpu1102I	GCTNAGC	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	139, 154
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	4 cut(s)	48, 98, 312, 389
BseNI	ACTGG	2 cut(s)	139, 154
BseXI	GCAGC	2 cut(s)	154, 182
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	2 cut(s)	252, 376
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	418
Bsp1720I	GCTNAGC	1 cut(s)	375
Bsp68I	TCGCGA	1 cut(s)	244
BspCNI	CTCAG	4 cut(s)	47, 97, 313, 388
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	203
BspMAI	CTGCAG	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	139, 154
BssMI	GATC	1 cut(s)	418
BstDEI	CTNAG	4 cut(s)	34, 84, 321, 375
BstFNI	CGCG	1 cut(s)	244
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	154, 182
BtsIMutI	CAGTG	2 cut(s)	132, 147
BtuMI	TCGCGA	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	3 cut(s)	97, 191, 281
CviJI	RGCY	9 cut(s)	22, 38, 183, 202, 274, 295, 316, 328, 379
CviKI_1	RGCY	9 cut(s)	22, 38, 183, 202, 274, 295, 316, 328, 379
DdeI	CTNAG	4 cut(s)	34, 84, 321, 375
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	347
EcoICRI	GAGCTC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	3 cut(s)	100, 194, 284
FaiI	YATR	6 cut(s)	81, 98, 124, 192, 282, 300
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	3 cut(s)	96, 190, 280
Fnu4HI	GCNGC	2 cut(s)	168, 171
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	168, 171
GluI	GCNGC	2 cut(s)	168, 171
GsuI	CTGGAG	2 cut(s)	188, 260
Hin1II	CATG	3 cut(s)	100, 194, 284
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	5 cut(s)	5, 14, 227, 265, 358
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	87, 322, 423
Hpy188III	TCNNGA	4 cut(s)	205, 243, 269, 365
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	192, 231, 410
HpyCH4V	TGCA	3 cut(s)	170, 233, 305
HpyF3I	CTNAG	4 cut(s)	34, 84, 321, 375
Hsp92II	CATG	3 cut(s)	100, 194, 284
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	2 cut(s)	207, 279
LpnPI	CCDG	8 cut(s)	120, 135, 208, 218, 290, 305, 350, 365
Lsp1109I	GCAGC	2 cut(s)	154, 182
MaeIII	GTNAC	3 cut(s)	99, 406, 430
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	3 cut(s)	268, 353, 387
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	3 cut(s)	59, 72, 104
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	3 cut(s)	74, 277, 337
MseI	TTAA	2 cut(s)	186, 439
Mva1269I	GAATGC	2 cut(s)	252, 376
MvnI	CGCG	1 cut(s)	244
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	3 cut(s)	100, 194, 284
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	2 cut(s)	99, 406
NruI	TCGCGA	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	241
PctI	GAATGC	2 cut(s)	252, 376
PfeI	GAWTC	5 cut(s)	5, 14, 227, 265, 358
PkrI	GCNGC	2 cut(s)	169, 172
Psp124BI	GAGCTC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	289
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	211
RruI	TCGCGA	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	186, 439
SatI	GCNGC	2 cut(s)	168, 171
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	1 cut(s)	289
Sse9I	AATT	3 cut(s)	59, 72, 104
SstI	GAGCTC	1 cut(s)	276
TasI	AATT	3 cut(s)	59, 72, 104
TfiI	GAWTC	5 cut(s)	5, 14, 227, 265, 358
Tru1I	TTAA	2 cut(s)	186, 439
Tru9I	TTAA	2 cut(s)	186, 439
TscAI	CASTG	2 cut(s)	139, 154
TseFI	GTSAC	2 cut(s)	99, 406
TseI	GCWGC	2 cut(s)	167, 170
Tsp45I	GTSAC	2 cut(s)	99, 406
TspDTI	ATGAA	3 cut(s)	27, 174, 207
TspRI	CASTG	2 cut(s)	139, 154
VpaK11BI	GGWCC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.