Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007128

Physical Location & Seq

Genomic Coordinates Forward (+)

14211308 .. 14212392

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTATGTATATAGTTGCTATCTTCTCCAAAACATTTATCATCAGTCTGGTTCTTTCCCTAAAACCCCATCTAAGATTTCTCTCTTTTTCTCTTTCCCTCAAAGTTCTTTCATGGATATAAATGAATCAAAGGGAAACCATTACTTACCTCAACTTCTCCCCAGTACTAAACAATCCCATCTTTACTCAAGTCCCCACAATATGCAGGCAGTTGAAGTTGTGGAGAACCATTCACTACTATCCCTTCAAAACCATACTCAGAATCCAGATTCCATACCATTTTACCCAACTCGGATTTTCTCCATGTCTCATATCCATGATTTTTCGTCGAACGGCTCTTCTCTTAACAATGACACTGTTTTTGATGAAGCAACTGCTGCCGGAGAGCAAGGCCTTACCTATGAGAAAAGGATCAAGAGAATGATTTCCAACAGGGAATCTGCACGAAGGTCACGAATGCGGAAAAAGAAGCAGATTGAAGAGCTGCAGCATCAGGTGGACCAGCTTCACATCACAAATCGTCAGCTCTCCGAGAAGCTCATTCAACTGTTGGAGGGAAATCAACATGTTCTCCAGGAGAACGCTCAACTGAAAGAAAGAGTTTCGTCACTTCAAGTCATCCTTTCAGATCTGATATCCCCTCTGCAGCGAAATGTAGAAATGCCACCACCGACGCCCAAATCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

230

Amino Acids

26.34

Weight (kDa)

8.6

Isoelectric Point (pI)

71.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	135 - 183	2.9e-10	Basic region leucine zipper
bZIP_1	PF00170	136 - 194	8.9e-14	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60830
fragaria_vesca	FvH4_5g13260 FvH4_6g20610
malus_domestica	MD06G1206800.v1.1
prunus_persica	Prupe.5G211200_v2.0.a1
pyrus_communis	pycom06g18460
rosa_chinensis	RchiOBHm_Chr3g0476411
rosa_laevigata	RLG00000005012 RLG00000023769
rosa_multiflora	Rmu_sc0004556.1_g000010 Rmu_sc0004712.1_g000032 Rmu_sc0007533.1_g000006
rosa_roxburghii	Rroxscaffold_3G00270090 Rroxscaffold_6G00405290
rosa_rugosa	Rorug03G0154300 Rorug06G0461400
rosa_samantha	Rh3BG237000 Rh3CG231500 Rh3DG231500 Rh7AG062400 Rh7BG062600 Rh7CG064000 Rh7DG062300
rosa_wichuraiana	Rw3G018670 Rw7G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	674
AfaI	GTAC	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	5 cut(s)	215, 248, 479, 545, 614
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	4 cut(s)	484, 505, 526, 538
AluI	AGCT	4 cut(s)	484, 505, 526, 538
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	4 cut(s)	377, 484, 487, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
Asp700I	GAANNNNTTC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	499
BbvI	GCAGC	4 cut(s)	364, 471, 499, 658
BccI	CCATC	2 cut(s)	76, 186
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	485, 644
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	4 cut(s)	378, 485, 488, 647
BlsI	GCNGC	4 cut(s)	379, 486, 489, 648
BmcAI	AGTACT	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	499
BmuI	ACTGGG	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	575
BseGI	GGATG	1 cut(s)	618
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	4 cut(s)	364, 471, 499, 658
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	411, 628
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	271
BspMAI	CTGCAG	2 cut(s)	489, 648
BspPI	GGATC	1 cut(s)	419
BspQI	GCTCTTC	2 cut(s)	343, 474
BsrI	ACTGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	411, 628
BssNI	GRCGYC	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	2 cut(s)	358, 549
Bst6I	CTCTTC	2 cut(s)	343, 474
BstACI	GRCGYC	1 cut(s)	674
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	72, 258, 687
BstF5I	GGATG	1 cut(s)	618
BstKTI	GATC	2 cut(s)	414, 631
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	2 cut(s)	411, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	2 cut(s)	485, 644
BstV1I	GCAGC	4 cut(s)	364, 471, 499, 658
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	499
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	4 cut(s)	112, 304, 317, 566
CviJI	RGCY	6 cut(s)	336, 393, 484, 505, 526, 538
CviKI_1	RGCY	6 cut(s)	336, 393, 484, 505, 526, 538
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	72, 258, 687
DpnI	GATC	2 cut(s)	413, 630
DpnII	GATC	2 cut(s)	411, 628
Eam1104I	CTCTTC	2 cut(s)	343, 474
EarI	CTCTTC	2 cut(s)	343, 474
Eco147I	AGGCCT	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	636
Eco47I	GGWCC	1 cut(s)	499
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	636
FaeI	CATG	4 cut(s)	115, 307, 320, 569
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	4 cut(s)	111, 303, 316, 565
Fnu4HI	GCNGC	4 cut(s)	378, 485, 488, 647
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	4 cut(s)	378, 485, 488, 647
GluI	GCNGC	4 cut(s)	378, 485, 488, 647
GsuI	CTGGAG	1 cut(s)	557
HaeIII	GGCC	1 cut(s)	393
HapII	CCGG	1 cut(s)	381
HgaI	GACGC	1 cut(s)	682
Hin1I	GRCGYC	1 cut(s)	674
Hin1II	CATG	4 cut(s)	115, 307, 320, 569
HinfI	GANTC	4 cut(s)	125, 262, 269, 437
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	5 cut(s)	261, 294, 532, 628, 633
Hpy188III	TCNNGA	3 cut(s)	266, 415, 453
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	2 cut(s)	331, 676
HpyAV	CCTTC	2 cut(s)	254, 441
HpyCH4III	ACNGT	2 cut(s)	358, 549
HpyCH4V	TGCA	4 cut(s)	205, 443, 487, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	3 cut(s)	72, 258, 687
Hsp92I	GRCGYC	1 cut(s)	674
Hsp92II	CATG	4 cut(s)	115, 307, 320, 569
Kzo9I	GATC	2 cut(s)	411, 628
LguI	GCTCTTC	2 cut(s)	343, 474
Lsp1109I	GCAGC	4 cut(s)	364, 471, 499, 658
LweI	GCATC	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	450, 606
MalI	GATC	2 cut(s)	413, 630
MboI	GATC	2 cut(s)	411, 628
MboII	GAAGA	3 cut(s)	14, 330, 491
MflI	RGATCY	1 cut(s)	628
MmeI	TCCRAC	2 cut(s)	453, 531
MnlI	CCTC	4 cut(s)	108, 159, 547, 651
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	2 cut(s)	411, 628
NlaIII	CATG	4 cut(s)	115, 307, 320, 569
NmuCI	GTSAC	2 cut(s)	450, 606
NspI	RCATGY	1 cut(s)	569
PceI	AGGCCT	1 cut(s)	393
PciI	ACATGT	1 cut(s)	565
PciSI	GCTCTTC	2 cut(s)	343, 474
PcsI	WCGNNNNNNNCGW	2 cut(s)	451, 680
PctI	GAATGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	4 cut(s)	125, 262, 269, 437
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	4 cut(s)	379, 486, 489, 648
PscI	ACATGT	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	499
PstI	CTGCAG	2 cut(s)	489, 648
PsuI	RGATCY	1 cut(s)	628
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	315
SapI	GCTCTTC	2 cut(s)	343, 474
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	4 cut(s)	378, 485, 488, 647
Sau3AI	GATC	2 cut(s)	411, 628
Sau96I	GGNCC	1 cut(s)	499
ScaI	AGTACT	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	575
SetI	ASST	8 cut(s)	151, 401, 452, 486, 498, 507, 528, 540
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	2 cut(s)	485, 644
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	460
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	358, 549
TaqI	TCGA	2 cut(s)	329, 683
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	4 cut(s)	125, 262, 269, 437
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	450, 606
TseI	GCWGC	4 cut(s)	377, 484, 487, 646
Tsp45I	GTSAC	2 cut(s)	450, 606
TspDTI	ATGAA	3 cut(s)	100, 138, 381
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	499
XceI	RCATGY	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	424
ZrmI	AGTACT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.