Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Forward (+)

24620144 .. 24622666

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAACGACCTGAGTGAACATGTACTCGATCTTGAAGTCAGAGTAACTAAATCAGGGAAATTGGAAGAAGAAGTTAACTATTTGAGGGAGGAGTTGTGTTCGTCGAAATCTGAGCAGCTATTGTTGTTGCAAGAACTGGAGAGCACAGAAACTGAGCTACAGTTTTCTTTGTTTTCTGTTGAGAAGCTGGAGGAGTCGGTCTCATCCTTAACATTGGAGTCTCAGTGTGAGATAGAAAGCATAAAACTTGATATAGTAGCGTTGGAGCAGGCGCTCTTTGATGCTCAGAAATTTCAAGGTGAAAGCATCCAAGAAAACGATAAGTTAAGAGAAATAGTCAAGGAGCTACGGTTGAACTCTCGAGAGGCAGAAGAGAATGCTGAGTGTTTAGAGAAGCAAAACAAGGAGCTGATGGAGAGATGTGTAGCCTCTGAAAGGAATATCAAAGACTTACGTCAAAGCTTTAGAGGAAGGTTGGAAAGTGAAAGTGAAGCGCCTGTAAATCCAGATTGTTTCCATGACATCATCAAGAAATTAGAGGTTTTCCAGGATGGGAAACTGAGAGACAAAATGGAAGATATGGCAAGACAGATACTTCAATACAAAGATCTTGTAAAGCAGCTCAAGGATGAGTTGAAAGAAGAGAAACTAAAGGCCAAGGAAGAAGCAGAGGACTTAACACAAGAAATGGCTGAATTAAGATATGAAATGACATGTTTATTGGAGGAAGAATGCAAGCGGCGTGCATGCATCGAACAAGCATCATTACAAAGAATAGCCAATCTAGAAGCACAGATCAAGAGAGAGAAGAACAAGTCCTCAACTTGCTTAGTTCCTCTTCCTGCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

32.92

Weight (kDa)

4.73

Isoelectric Point (pI)

68.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	739
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	435
AflIII	ACRYGT	2 cut(s)	19, 713
AgsI	TTSAA	5 cut(s)	35, 296, 355, 599, 637
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	7 cut(s)	118, 157, 187, 346, 409, 462, 622
AluI	AGCT	7 cut(s)	118, 157, 187, 346, 409, 462, 622
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	3 cut(s)	205, 225, 558
AlwNI	CAGNNNCTG	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	2 cut(s)	115, 619
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	274, 496
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	127, 631
BccI	CCATC	2 cut(s)	406, 545
BciT130I	CCWGG	1 cut(s)	548
BcoDI	GTCTC	3 cut(s)	205, 225, 558
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	1 cut(s)	158
BfoI	RGCGCY	2 cut(s)	275, 497
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	3 cut(s)	116, 620, 740
BlsI	GCNGC	3 cut(s)	117, 621, 741
Bme1390I	CCNGG	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	4 cut(s)	271, 315, 759, 770
BoxI	GACNNNNGTC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpmI	CTGGAG	2 cut(s)	158, 209
BpuEI	CTTGAG	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	657
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 209, 239, 335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	4 cut(s)	203, 306, 556, 634
BseLI	CCNNNNNNNGG	1 cut(s)	435
BseMII	CTCAG	6 cut(s)	102, 144, 236, 299, 372, 551
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	104, 206
BseXI	GCAGC	2 cut(s)	127, 631
BshFI	GGCC	1 cut(s)	656
BsiHKAI	GWGCWC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	435
BsmAI	GTCTC	3 cut(s)	205, 225, 558
BsmI	GAATGC	2 cut(s)	382, 737
BsnI	GGCC	1 cut(s)	656
Bso31I	GGTCTC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	28, 607, 795
BspACI	CCGC	1 cut(s)	739
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	6 cut(s)	103, 145, 235, 298, 373, 552
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	3 cut(s)	28, 607, 795
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	162, 351
Bst6I	CTCTTC	3 cut(s)	366, 636, 843
BstC8I	GCNNGC	4 cut(s)	270, 737, 744, 748
BstDEI	CTNAG	8 cut(s)	11, 111, 153, 222, 285, 381, 560, 829
BstENI	CCTNNNNNAGG	1 cut(s)	433
BstF5I	GGATG	4 cut(s)	203, 306, 556, 634
BstH2I	RGCGCY	2 cut(s)	275, 497
BstHHI	GCGC	2 cut(s)	274, 496
BstKTI	GATC	3 cut(s)	31, 610, 798
BstMAI	GTCTC	3 cut(s)	205, 225, 558
BstMBI	GATC	3 cut(s)	28, 607, 795
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	3 cut(s)	23, 717, 750
BstPAI	GACNNNNGTC	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	127, 631
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	656
BtsCI	GGATG	4 cut(s)	203, 306, 556, 634
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	4 cut(s)	270, 737, 744, 748
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	2 cut(s)	274, 496
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	4 cut(s)	20, 518, 714, 747
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	8 cut(s)	11, 111, 153, 222, 285, 381, 560, 829
DpnI	GATC	3 cut(s)	30, 609, 797
DpnII	GATC	3 cut(s)	28, 607, 795
Eam1104I	CTCTTC	3 cut(s)	366, 636, 843
EarI	CTCTTC	3 cut(s)	366, 636, 843
Eco130I	CCWWGG	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	360
EcoNI	CCTNNNNNAGG	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	4 cut(s)	23, 521, 717, 750
FaiI	YATR	9 cut(s)	21, 242, 254, 519, 581, 705, 715, 748, 850
FatI	CATG	4 cut(s)	19, 517, 713, 746
Fnu4HI	GCNGC	3 cut(s)	116, 620, 740
FokI	GGATG	4 cut(s)	190, 293, 563, 641
Fsp4HI	GCNGC	3 cut(s)	116, 620, 740
FspBI	CTAG	1 cut(s)	785
GlaI	GCGC	2 cut(s)	273, 495
GluI	GCNGC	3 cut(s)	116, 620, 740
GsuI	CTGGAG	2 cut(s)	158, 209
HaeII	RGCGCY	2 cut(s)	275, 497
HaeIII	GGCC	1 cut(s)	656
HhaI	GCGC	2 cut(s)	274, 496
Hin1II	CATG	4 cut(s)	23, 521, 717, 750
Hin6I	GCGC	2 cut(s)	272, 494
HinP1I	GCGC	2 cut(s)	272, 494
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	2 cut(s)	194, 218
HpaI	GTTAAC	1 cut(s)	76
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	17, 76
Hpy188I	TCNGA	4 cut(s)	41, 112, 288, 433
Hpy188III	TCNNGA	7 cut(s)	32, 360, 362, 506, 529, 785, 799
Hpy8I	GTNNAC	2 cut(s)	17, 76
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	465
HpyCH4III	ACNGT	2 cut(s)	162, 351
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	4 cut(s)	130, 735, 746, 750
HpyF3I	CTNAG	8 cut(s)	11, 111, 153, 222, 285, 381, 560, 829
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	4 cut(s)	23, 521, 717, 750
HspAI	GCGC	2 cut(s)	272, 494
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	28, 607, 795
LmnI	GCTCC	3 cut(s)	265, 343, 406
LpnPI	CCDG	9 cut(s)	23, 39, 122, 173, 254, 510, 519, 533, 560
Lsp1109I	GCAGC	2 cut(s)	127, 631
LweI	GCATC	4 cut(s)	271, 315, 759, 770
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	3 cut(s)	30, 609, 797
MboI	GATC	3 cut(s)	28, 607, 795
MboII	GAAGA	9 cut(s)	77, 80, 383, 587, 653, 674, 740, 820, 830
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	4 cut(s)	59, 290, 533, 695
MlyI	GAGTC	2 cut(s)	203, 227
MmeI	TCCRAC	2 cut(s)	243, 456
Mph1103I	ATGCAT	1 cut(s)	752
MseI	TTAA	5 cut(s)	75, 209, 326, 677, 698
MspR9I	CCNGG	1 cut(s)	548
Mva1269I	GAATGC	2 cut(s)	382, 737
MvaI	CCWGG	1 cut(s)	548
NdeII	GATC	3 cut(s)	28, 607, 795
NlaIII	CATG	4 cut(s)	23, 521, 717, 750
NsiI	ATGCAT	1 cut(s)	752
NspI	RCATGY	3 cut(s)	23, 717, 750
PaeI	GCATGC	1 cut(s)	750
PaeR7I	CTCGAG	1 cut(s)	360
PciI	ACATGT	2 cut(s)	19, 713
PctI	GAATGC	2 cut(s)	382, 737
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	3 cut(s)	117, 621, 741
PleI	GAGTC	2 cut(s)	202, 226
PpsI	GAGTC	2 cut(s)	202, 226
PscI	ACATGT	2 cut(s)	19, 713
PshAI	GACNNNNGTC	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SaqAI	TTAA	5 cut(s)	75, 209, 326, 677, 698
SatI	GCNGC	3 cut(s)	116, 620, 740
Sau3AI	GATC	3 cut(s)	28, 607, 795
SchI	GAGTC	2 cut(s)	203, 227
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	4 cut(s)	271, 315, 759, 770
SfcI	CTRYAG	1 cut(s)	158
Sfr274I	CTCGAG	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	360, 623
SmoI	CTYRAG	2 cut(s)	360, 623
SphI	GCATGC	1 cut(s)	750
Sse9I	AATT	4 cut(s)	59, 290, 533, 695
SsiI	CCGC	1 cut(s)	739
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	2 cut(s)	162, 351
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	4 cut(s)	27, 104, 361, 753
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	4 cut(s)	59, 290, 533, 695
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	1 cut(s)	742
Tru1I	TTAA	5 cut(s)	75, 209, 326, 677, 698
Tru9I	TTAA	5 cut(s)	75, 209, 326, 677, 698
TscAI	CASTG	1 cut(s)	230
TseI	GCWGC	2 cut(s)	115, 619
TspDTI	ATGAA	2 cut(s)	17, 720
TspRI	CASTG	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	433
XapI	RAATTY	1 cut(s)	290
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	3 cut(s)	23, 717, 750
XhoI	CTCGAG	1 cut(s)	360
XspI	CTAG	1 cut(s)	785
Zsp2I	ATGCAT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.