Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Reverse (-)

3630346 .. 3632663

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTTAGAGAAAGAACTCAAGAACTGCTCTCAAGAAATAGATTACCTTCAGGATCAATTAAATGCAAGGGACACAGAAGTGACCTTTCTTGAAGAGCATGTACATAGCCTTGAGTTGAAATTAGCAGGCACAGAGAATTTACAGGTGACAGTTGACAGGTTAAGAGATGAGCTGAAGAAGTCCTATTCAGAGTGCTTGTTCTTAATGCAAGAACTGGAAAGCAAAGAAGTGGAGTTACAGAATTCAAATTTGTGCATAGAGAAACTAGAGGAGTCAGTTTCATCCATGTCATTAGAGTCTCAGTGTGAAATTGAGAGTATGAAGCTTGATATGTTAGCGTTGGAGCAGAGTTGCCTTGAAGCTAAGAAAGTCCAGGAAGAAACTGTTCGAGAAAAAACTAGGATGAATGAGTTAATTCAAGAACTTGAGGTTCAATGTCAGGATGCACGGAAAACTGCTGATTGCTTAGATATGGAAAATAAGGAACTAAGGGAGAAGCTTGATGCCTCAGAGACAAATACTAGGATCTTTTGTCAGAGGGTTGAAAAATTGCTGGAAGAGGATAGATTTGAATTCAAGTCAGAGTCTTTGTTAAGTGAGCTAGAGGGAAGGCACACATATTCAATAGATATGAGCACTTGTGGAGAAGTCTTGGAGTCACTTTTTTCCAAATTGGCAATGGTACTGGCACCAGATGCCGATATGATAGTGAAGATGAAGGAGATGTCACACCAGATACATGAATATGAACTTCTTGTGAAGCAACTAAAGGAAGAACTGAGAGAAGAAAAGTTAAAGGCAAAAGAAGAAGCTGAGGATCTGGCTCAAGAAATGGCTGAGCTCAGATACCAACTTACAGGCTTGCTTGAAGACGAGTGTAAGCGTCGTGCTTACATTGAACAAGCATCTTTGCAAAGAATTGCTGAGTTAGAAGCGCAGTTGGCTTTCATTCAACCTGGCATCTCTTTCGGCTATGAGTGCAGACAAATCCCGGGCCGAAAAACTGACACTAATGACACAGGTCAGTCTCCCAAGGGAACACAACTTGAGACTGAGGTGAAACCTATTTTTGTCGAGGATCTCCAACAGGGTGCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

42.46

Weight (kDa)

4.59

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	688
AclWI	GGATC	4 cut(s)	60, 533, 825, 1086
AcsI	RAATTY	4 cut(s)	136, 241, 247, 572
AcuI	CTGAAG	2 cut(s)	32, 194
AfaI	GTAC	2 cut(s)	102, 684
AjnI	CCWGG	2 cut(s)	372, 955
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	7 cut(s)	172, 325, 362, 499, 601, 812, 841
AluI	AGCT	7 cut(s)	172, 325, 362, 499, 601, 812, 841
Alw21I	GWGCWC	2 cut(s)	638, 843
Alw26I	GTCTC	4 cut(s)	303, 506, 1032, 1043
AlwI	GGATC	4 cut(s)	60, 533, 825, 1086
Ama87I	CYCGRG	1 cut(s)	991
AoxI	GGCC	1 cut(s)	994
ApoI	RAATTY	4 cut(s)	136, 241, 247, 572
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	937
AspS9I	GGNCC	1 cut(s)	994
AsuC2I	CCSGG	2 cut(s)	992, 993
AsuHPI	GGTGA	2 cut(s)	157, 1069
AvaI	CYCGRG	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	843
BarI	GAAGNNNNNNTAC	4 cut(s)	84, 116, 219, 251
BbsI	GAAGAC	1 cut(s)	876
Bbv12I	GWGCWC	2 cut(s)	638, 843
BbvCI	CCTCAGC	1 cut(s)	813
BcgI	CGANNNNNNTGC	2 cut(s)	949, 983
BciT130I	CCWGG	2 cut(s)	374, 957
BcnI	CCSGG	2 cut(s)	992, 993
BcoDI	GTCTC	4 cut(s)	303, 506, 1032, 1043
BfaI	CTAG	4 cut(s)	266, 399, 522, 602
BlpI	GCTNAGC	1 cut(s)	837
Bme1390I	CCNGG	4 cut(s)	374, 957, 992, 993
BmeT110I	CYCGRG	1 cut(s)	991
BmgT120I	GGNCC	1 cut(s)	994
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	4 cut(s)	374, 957, 992, 993
BmsI	GCATC	5 cut(s)	433, 493, 685, 914, 969
BoxI	GACNNNNGTC	1 cut(s)	1020
BpiI	GAAGAC	1 cut(s)	876
Bpu10I	CCTNAGC	1 cut(s)	813
Bpu1102I	GCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	5 cut(s)	15, 131, 446, 810, 1067
BpuMI	CCSGG	2 cut(s)	992, 993
BsaJI	CCNNGG	2 cut(s)	991, 1032
Bse1I	ACTGG	2 cut(s)	219, 690
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	374, 957
BseDI	CCNNGG	2 cut(s)	991, 1032
BseGI	GGATG	3 cut(s)	281, 408, 448
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	8 cut(s)	314, 522, 770, 804, 828, 856, 915, 1044
BseNI	ACTGG	2 cut(s)	219, 690
BseRI	GAGGAG	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	1000
BshFI	GGCC	1 cut(s)	996
BshNI	GGYRCC	1 cut(s)	688
BsiHKAI	GWGCWC	2 cut(s)	638, 843
BsiHKCI	CYCGRG	1 cut(s)	991
BsiSI	CCGG	1 cut(s)	992
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	4 cut(s)	303, 506, 1032, 1043
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	996
BsoBI	CYCGRG	1 cut(s)	991
Bsp1286I	GDGCHC	2 cut(s)	638, 843
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	4 cut(s)	52, 525, 817, 1078
Bsp1720I	GCTNAGC	1 cut(s)	837
BspANI	GGCC	1 cut(s)	996
BspCNI	CTCAG	8 cut(s)	313, 521, 771, 805, 829, 855, 916, 1045
BspLI	GGNNCC	1 cut(s)	690
BspPI	GGATC	4 cut(s)	60, 533, 825, 1086
BspQI	GCTCTTC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	684
BsrGI	TGTACA	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	219, 690
BssECI	CCNNGG	2 cut(s)	991, 1032
BssMI	GATC	4 cut(s)	52, 525, 817, 1078
BssT1I	CCWWGG	1 cut(s)	1032
Bst2UI	CCWGG	2 cut(s)	374, 957
Bst4CI	ACNGT	2 cut(s)	151, 385
Bst6I	CTCTTC	2 cut(s)	87, 552
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	127, 863
BstF5I	GGATG	3 cut(s)	281, 408, 448
BstHHI	GCGC	1 cut(s)	937
BstKTI	GATC	4 cut(s)	55, 528, 820, 1081
BstMAI	GTCTC	4 cut(s)	303, 506, 1032, 1043
BstMBI	GATC	4 cut(s)	52, 525, 817, 1078
BstMWI	GCNNNNNNNGC	3 cut(s)	695, 941, 978
BstNI	CCWGG	2 cut(s)	374, 957
BstNSI	RCATGY	1 cut(s)	101
BstPAI	GACNNNNGTC	1 cut(s)	1020
BstSCI	CCNGG	4 cut(s)	372, 955, 990, 991
BstV2I	GAAGAC	1 cut(s)	876
BstX2I	RGATCY	3 cut(s)	525, 817, 1078
BstYI	RGATCY	3 cut(s)	525, 817, 1078
BsuRI	GGCC	1 cut(s)	996
BtsCI	GGATG	3 cut(s)	281, 408, 448
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	2 cut(s)	127, 863
CfoI	GCGC	1 cut(s)	937
Cfr13I	GGNCC	1 cut(s)	994
Cfr9I	CCCGGG	1 cut(s)	991
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	2 cut(s)	101, 683
CviAII	CATG	4 cut(s)	98, 286, 740, 1095
CviQI	GTAC	2 cut(s)	101, 683
DpnI	GATC	4 cut(s)	54, 527, 819, 1080
DpnII	GATC	4 cut(s)	52, 525, 817, 1078
Eam1104I	CTCTTC	2 cut(s)	87, 552
EarI	CTCTTC	2 cut(s)	87, 552
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	1 cut(s)	1032
Eco24I	GRGCYC	1 cut(s)	843
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	2 cut(s)	32, 194
Eco88I	CYCGRG	1 cut(s)	991
EcoICRI	GAGCTC	1 cut(s)	841
EcoRI	GAATTC	2 cut(s)	241, 572
EcoRII	CCWGG	2 cut(s)	372, 955
EcoT14I	CCWWGG	1 cut(s)	1032
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	1032
FaeI	CATG	4 cut(s)	101, 289, 743, 1098
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	97, 285, 739, 1094
FokI	GGATG	3 cut(s)	268, 415, 455
FriOI	GRGCYC	1 cut(s)	843
FspBI	CTAG	4 cut(s)	266, 399, 522, 602
GlaI	GCGC	1 cut(s)	936
HaeIII	GGCC	1 cut(s)	996
HapII	CCGG	1 cut(s)	992
HgaI	GACGC	1 cut(s)	872
HhaI	GCGC	1 cut(s)	937
Hin1II	CATG	4 cut(s)	101, 289, 743, 1098
Hin6I	GCGC	1 cut(s)	935
HinP1I	GCGC	1 cut(s)	935
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	2 cut(s)	323, 497
HinfI	GANTC	4 cut(s)	272, 296, 584, 656
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	2 cut(s)	157, 1069
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	5 cut(s)	190, 511, 537, 583, 845
Hpy188III	TCNNGA	8 cut(s)	19, 32, 50, 89, 389, 419, 440, 827
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	888
HpyAV	CCTTC	3 cut(s)	56, 603, 712
HpyCH4III	ACNGT	2 cut(s)	151, 385
HpyCH4V	TGCA	7 cut(s)	65, 208, 255, 446, 913, 981, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	695, 941, 978
Hsp92II	CATG	4 cut(s)	101, 289, 743, 1098
HspAI	GCGC	1 cut(s)	935
Kzo9I	GATC	4 cut(s)	52, 525, 817, 1078
LguI	GCTCTTC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	343
LweI	GCATC	5 cut(s)	433, 493, 685, 914, 969
MaeI	CTAG	4 cut(s)	266, 399, 522, 602
MaeIII	GTNAC	5 cut(s)	79, 145, 234, 657, 726
MalI	GATC	4 cut(s)	54, 527, 819, 1080
MboI	GATC	4 cut(s)	52, 525, 817, 1078
MboII	GAAGA	9 cut(s)	104, 187, 389, 569, 724, 785, 797, 818, 881
MflI	RGATCY	3 cut(s)	525, 817, 1078
MhlI	GDGCHC	2 cut(s)	638, 843
MlyI	GAGTC	4 cut(s)	281, 305, 593, 665
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	262, 421, 517, 531, 553, 598, 808, 1048, 1069
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	6 cut(s)	59, 161, 203, 413, 593, 794
MslI	CAYNNNNRTG	2 cut(s)	77, 744
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	4 cut(s)	374, 957, 992, 993
MvaI	CCWGG	2 cut(s)	374, 957
MwoI	GCNNNNNNNGC	3 cut(s)	695, 941, 978
NciI	CCSGG	2 cut(s)	992, 993
NdeII	GATC	4 cut(s)	52, 525, 817, 1078
NlaIII	CATG	4 cut(s)	101, 289, 743, 1098
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	4 cut(s)	79, 145, 657, 726
NspI	RCATGY	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	77
PciSI	GCTCTTC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	384
PfoI	TCCNGGA	1 cut(s)	372
PleI	GAGTC	4 cut(s)	280, 304, 592, 664
PpsI	GAGTC	4 cut(s)	280, 304, 592, 664
PshAI	GACNNNNGTC	1 cut(s)	1020
Psp124BI	GAGCTC	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	372, 955
PspGI	CCWGG	2 cut(s)	372, 955
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	1 cut(s)	994
PsuI	RGATCY	3 cut(s)	525, 817, 1078
RsaI	GTAC	2 cut(s)	102, 684
RsaNI	GTAC	2 cut(s)	101, 683
RseI	CAYNNNNRTG	2 cut(s)	77, 744
SacI	GAGCTC	1 cut(s)	843
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	6 cut(s)	59, 161, 203, 413, 593, 794
Sau3AI	GATC	4 cut(s)	52, 525, 817, 1078
Sau96I	GGNCC	1 cut(s)	994
SchI	GAGTC	4 cut(s)	281, 305, 593, 665
ScrFI	CCNGG	4 cut(s)	374, 957, 992, 993
SduI	GDGCHC	2 cut(s)	638, 843
SfaNI	GCATC	5 cut(s)	433, 493, 685, 914, 969
SmaI	CCCGGG	1 cut(s)	993
SmiMI	CAYNNNNRTG	2 cut(s)	77, 744
SmlI	CTYRAG	6 cut(s)	17, 30, 110, 425, 825, 1046
SmoI	CTYRAG	6 cut(s)	17, 30, 110, 425, 825, 1046
SspMI	CTAG	4 cut(s)	266, 399, 522, 602
SstI	GAGCTC	1 cut(s)	843
StyD4I	CCNGG	4 cut(s)	372, 955, 990, 991
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	2 cut(s)	151, 385
TaqI	TCGA	2 cut(s)	388, 1074
TatI	WGTACW	1 cut(s)	100
Tru1I	TTAA	6 cut(s)	59, 161, 203, 413, 593, 794
Tru9I	TTAA	6 cut(s)	59, 161, 203, 413, 593, 794
TscAI	CASTG	1 cut(s)	308
TseFI	GTSAC	4 cut(s)	79, 145, 657, 726
Tsp45I	GTSAC	4 cut(s)	79, 145, 657, 726
TspDTI	ATGAA	7 cut(s)	270, 335, 419, 731, 756, 762, 937
TspGWI	ACGGA	1 cut(s)	463
TspMI	CCCGGG	1 cut(s)	991
TspRI	CASTG	1 cut(s)	308
XapI	RAATTY	4 cut(s)	136, 241, 247, 572
XceI	RCATGY	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	676
XmaI	CCCGGG	1 cut(s)	991
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	4 cut(s)	266, 399, 522, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.