Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Reverse (-)

3569950 .. 3571465

Gene Structure 1516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G004240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCATTAGAGTCTCAGTGTGAAATTGAGAGTATGAAGCTTGATATGTTAGCGTTGGAGCAGAGTTGCCTTCAAGCTAAGAAAGTCCAGGAAGAAACTGTTCGAGAAAAAACTAGGATGAATGAGTTAATTCAAGAACTTGAGGTTCAATGTCAGGATGCATGGAAAACTGCTGATTGCTTAGATATGGAAAATAAGGAACTAAGGGAGAAGCTTGATGCCTCAGAGACAAATACTAGGATCTTTTGTCAGAGGGTTGAAAAATTGCTGGAAGAGGATAGATTTGAATACAAGTCAGAGTCTTTGTTAAGTGAGCTAGAGGGAAGGCACACATATTCAATAGATATGAGCACTTGTGGAGAAGTCTTGGAGTCACTTTTTTCCAAATTGGCAATGGTACTGGCTCCAGATGCCGATATGATAGTGAAGATGAAGGAGATGTCACACCAGATACATGAATATGAACTTCTTGTGAAGCAACTAAAGGAAGAACTGAGAGAAGAAAAGTTAAAGGCAAAAGAAGAAGCTGAGGATCTGGCTCAAGAAATGGCTGAGCTCAGATACCAACTTACAGGCTTGCTTGAAGACGAGTGTAAGCGTCGTGCTTACATTGAACAAGCATCTCTGCAAAGAATTGCTGAGTTAGAAGCGCAGGTTCAAAAAGCACAGACAAAATCCTTTGCTGGTCTCCTCAGTCTCGATGAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

27.47

Weight (kDa)

4.66

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AclWI	GGATC	2 cut(s)	248, 540
AfaI	GTAC	1 cut(s)	399
AgsI	TTSAA	9 cut(s)	74, 134, 149, 260, 287, 339, 584, 614, 659
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	6 cut(s)	40, 77, 214, 316, 527, 556
AluI	AGCT	6 cut(s)	40, 77, 214, 316, 527, 556
Alw21I	GWGCWC	2 cut(s)	353, 558
Alw26I	GTCTC	4 cut(s)	18, 221, 692, 701
AlwI	GGATC	2 cut(s)	248, 540
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	2 cut(s)	353, 558
BbvCI	CCTCAGC	1 cut(s)	528
BciT130I	CCWGG	1 cut(s)	89
BcoDI	GTCTC	4 cut(s)	18, 221, 692, 701
BfaI	CTAG	3 cut(s)	114, 237, 317
BfuAI	ACCTGC	1 cut(s)	643
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	4 cut(s)	148, 208, 400, 629
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	161, 525
BsaI	GGTCTC	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	123, 163
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	8 cut(s)	29, 237, 485, 519, 543, 571, 630, 706
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	353, 558
BsmAI	GTCTC	4 cut(s)	18, 221, 692, 701
Bso31I	GGTCTC	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	353, 558
Bsp143I	GATC	2 cut(s)	240, 532
Bsp1720I	GCTNAGC	1 cut(s)	552
BspCNI	CTCAG	8 cut(s)	28, 236, 486, 520, 544, 570, 631, 705
BspLI	GGNNCC	1 cut(s)	405
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	2 cut(s)	248, 540
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	405
BssMI	GATC	2 cut(s)	240, 532
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	123, 163
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	2 cut(s)	243, 535
BstMAI	GTCTC	4 cut(s)	18, 221, 692, 701
BstMBI	GATC	2 cut(s)	240, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	2 cut(s)	240, 532
BstYI	RGATCY	2 cut(s)	240, 532
BtsCI	GGATG	2 cut(s)	123, 163
BtsIMutI	CAGTG	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	1 cut(s)	578
CfoI	GCGC	1 cut(s)	652
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	2 cut(s)	162, 455
CviQI	GTAC	1 cut(s)	398
DpnI	GATC	2 cut(s)	242, 534
DpnII	GATC	2 cut(s)	240, 532
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	558
Eco31I	GGTCTC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	2 cut(s)	165, 458
FatI	CATG	2 cut(s)	161, 454
FokI	GGATG	2 cut(s)	130, 170
FriOI	GRGCYC	1 cut(s)	558
FspBI	CTAG	3 cut(s)	114, 237, 317
GlaI	GCGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	390
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	2 cut(s)	165, 458
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HindIII	AAGCTT	2 cut(s)	38, 212
HinfI	GANTC	3 cut(s)	11, 299, 371
Hpy188I	TCNGA	4 cut(s)	226, 252, 298, 560
Hpy188III	TCNNGA	6 cut(s)	104, 134, 155, 407, 542, 698
Hpy99I	CGWCG	1 cut(s)	603
HpyAV	CCTTC	3 cut(s)	80, 318, 427
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	161, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
Hsp92II	CATG	2 cut(s)	165, 458
HspAI	GCGC	1 cut(s)	650
Kzo9I	GATC	2 cut(s)	240, 532
LmnI	GCTCC	2 cut(s)	58, 409
LweI	GCATC	4 cut(s)	148, 208, 400, 629
MaeI	CTAG	3 cut(s)	114, 237, 317
MaeIII	GTNAC	2 cut(s)	372, 441
MalI	GATC	2 cut(s)	242, 534
MboI	GATC	2 cut(s)	240, 532
MboII	GAAGA	7 cut(s)	104, 284, 439, 500, 512, 533, 596
MflI	RGATCY	2 cut(s)	240, 532
MhlI	GDGCHC	2 cut(s)	353, 558
MluCI	AATT	5 cut(s)	24, 129, 263, 386, 633
MlyI	GAGTC	3 cut(s)	20, 308, 380
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	136, 232, 246, 268, 313, 523, 701
Mph1103I	ATGCAT	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	3 cut(s)	128, 308, 509
MslI	CAYNNNNRTG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	2 cut(s)	240, 532
NlaIII	CATG	2 cut(s)	165, 458
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	372, 441
NsiI	ATGCAT	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	87
PleI	GAGTC	3 cut(s)	19, 307, 379
PpsI	GAGTC	3 cut(s)	19, 307, 379
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	405
PsuI	RGATCY	2 cut(s)	240, 532
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	3 cut(s)	128, 308, 509
Sau3AI	GATC	2 cut(s)	240, 532
SchI	GAGTC	3 cut(s)	20, 308, 380
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	2 cut(s)	353, 558
SetI	ASST	8 cut(s)	42, 79, 147, 216, 318, 529, 558, 657
SfaNI	GCATC	4 cut(s)	148, 208, 400, 629
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	140, 540
SmoI	CTYRAG	2 cut(s)	140, 540
Sse9I	AATT	5 cut(s)	24, 129, 263, 386, 633
SspMI	CTAG	3 cut(s)	114, 237, 317
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	103, 699
TasI	AATT	5 cut(s)	24, 129, 263, 386, 633
Tru1I	TTAA	3 cut(s)	128, 308, 509
Tru9I	TTAA	3 cut(s)	128, 308, 509
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	2 cut(s)	372, 441
Tsp45I	GTSAC	2 cut(s)	372, 441
TspDTI	ATGAA	5 cut(s)	50, 134, 446, 471, 477
TspRI	CASTG	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	3 cut(s)	114, 237, 317
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.