Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Reverse (-)

19267659 .. 19270328

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17250.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTCAAGCACAAGCAGCAGTAGCAGCAGCAAGAGGAATAGTGAGAGCTCATTGGATGTTGAGGAACTCCTTCAAATTGGGACAAGATGCAGAGAGCTAAAGAAAGAGAAAGACATGTTGAAAGAATCACAATCCCAGAGCTTTGGGCTGATCAGGAGATTAGAAGTGCATGTGAATTCGTTATCAGAAGCTTGCACAGAAGACAAGAAACAAATTCAAATGTTAGAGAAAGAACTCAAGAACTGCTCTCAAGAAATAGATTACCTGCAGGATCAACTAAATGTAAGGAACACTGAAGTGAACCTCCTTGAAGAGCATGTACATAGCCTTGAGTTTAAATTAGCCGATATGGCAACTTTACAAAAGATGGTTGACGGGTTAAGGACTGAACTTAAGAAGTCCTATACAGATCGCTTGTACTTAATACAGGAACTAGAAAACAAAGAAATAGAGTTACGGAATTCAAATTTGTGCATGGAGAAACTGGAGGAGTCAGTTTCATCCATGTCATTAGAGTCTCAGTGTGAAATAGAGAGTATGAAGCTTGATATATCGGCCTTGGAGCATAGCTGCTTTGAAGCTAAGAAAATACAGGAAGAAACTGTTCGAGAAAATACTAGGATGAGTCAGTTAATTCAAGCACTTGAGGTTCAATGTTGGGATTCCAAGAAAACTGCTGGAACTTTCGAAATGGAAAATAAGGAACTTACGAAGAAGCTTGATACATCGGAGACAAATACAAGGATATTCTGTCAGAGAGTTGAAAAATGGCTGGAAATGGACAGAGATCAACTCGACACTGAGTCCTTGTTGTGTGAACTAGAGGGAAAGCTTGCGTTGTCAGAGGAAATGAGCACGTATGGAGAAGTCTTGGGCCCCCTCTTTTCCAAATTGGCAATGGTAGTCACGCCAGATGCAGCATTAATAAAGAAGGTGGAGAAGATGTCACGTCAGATAGAAGAGTACGAAGTTCTTGTGAAGCAACTAAAGGAAGAACTGAAAGAGGAAAAGTTGAAGGCAAAAGAAGAAGCGGAGGATCTAGCTCAAGAAATGGCTGAGCTCAGATACCAAATGACAGGGTTGCTTGAAGAAGAGTGTAAGCGCCGTGCTTGCATCGAGCAAGCTTCGTTACAAAGAATTGCTGAGTTAGAAGTACAGATTCAAAAAGAACGGACCAAATCCATTGCTGCTCTCCGACAGCTTGATGAAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

46.77

Weight (kDa)

4.87

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AciI	CCGC	1 cut(s)	1031
AclWI	GGATC	2 cut(s)	279, 1044
AcsI	RAATTY	4 cut(s)	175, 213, 460, 466
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	4 cut(s)	321, 419, 965, 1155
AflII	CTTAAG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	114
AhdI	GACNNNNNGTC	1 cut(s)	802
AjiI	CACGTC	1 cut(s)	950
AleI	CACNNNNGTG	1 cut(s)	296
Alw21I	GWGCWC	3 cut(s)	50, 857, 1062
Alw26I	GTCTC	2 cut(s)	522, 725
AlwI	GGATC	2 cut(s)	279, 1044
AoxI	GGCC	2 cut(s)	555, 874
ApaI	GGGCCC	1 cut(s)	878
ApeKI	GCWGC	6 cut(s)	15, 24, 27, 570, 917, 1187
ApoI	RAATTY	4 cut(s)	175, 213, 460, 466
AseI	ATTAAT	1 cut(s)	923
Asp700I	GAANNNNTTC	2 cut(s)	69, 603
AspLEI	GCGC	1 cut(s)	1104
AspS9I	GGNCC	3 cut(s)	874, 875, 1173
AsuII	TTCGAA	1 cut(s)	687
AvaII	GGWCC	1 cut(s)	1173
BaeGI	GKGCMC	1 cut(s)	878
BanII	GRGCYC	3 cut(s)	50, 878, 1062
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	3 cut(s)	50, 857, 1062
BbvI	GCAGC	6 cut(s)	27, 36, 39, 557, 929, 1174
BccI	CCATC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	1089
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	522, 725
BfaI	CTAG	4 cut(s)	434, 618, 821, 1040
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	1105
BfrI	CTTAAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	350
BisI	GCNGC	6 cut(s)	16, 25, 28, 571, 918, 1188
BlpI	GCTNAGC	1 cut(s)	1056
BlsI	GCNGC	6 cut(s)	17, 26, 29, 572, 919, 1189
Bme18I	GGWCC	1 cut(s)	1173
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmgBI	CACGTC	1 cut(s)	950
BmgT120I	GGNCC	3 cut(s)	874, 875, 1173
BmiI	GGNNCC	2 cut(s)	876, 877
BmsI	GCATC	3 cut(s)	77, 904, 1122
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	777, 809
BpmI	CTGGAG	1 cut(s)	506
Bpu1102I	GCTNAGC	1 cut(s)	1056
Bpu14I	TTCGAA	1 cut(s)	687
BpuEI	CTTGAG	5 cut(s)	221, 234, 350, 665, 1029
BsaAI	YACGTR	1 cut(s)	858
BsaJI	CCNNGG	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	929, 959
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	2 cut(s)	903, 1182
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	3 cut(s)	61, 500, 627
BseMI	GCAATG	2 cut(s)	903, 1182
BseMII	CTCAG	5 cut(s)	533, 792, 1047, 1075, 1134
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	878
BseXI	GCAGC	6 cut(s)	27, 36, 39, 557, 929, 1174
BshFI	GGCC	2 cut(s)	557, 876
BsiHKAI	GWGCWC	3 cut(s)	50, 857, 1062
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	522, 725
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	557, 876
Bsp119I	TTCGAA	1 cut(s)	687
Bsp120I	GGGCCC	1 cut(s)	874
Bsp1286I	GDGCHC	4 cut(s)	50, 857, 878, 1062
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	5 cut(s)	150, 271, 409, 787, 1036
Bsp1720I	GCTNAGC	1 cut(s)	1056
BspACI	CCGC	1 cut(s)	1031
BspANI	GGCC	2 cut(s)	557, 876
BspCNI	CTCAG	5 cut(s)	532, 793, 1048, 1074, 1135
BspLI	GGNNCC	2 cut(s)	876, 877
BspMAI	CTGCAG	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	279, 1044
BspQI	GCTCTTC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	687
BspTI	CTTAAG	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	903, 1182
BsrGI	TGTACA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	5 cut(s)	150, 271, 409, 787, 1036
BssT1I	CCWWGG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	604
Bst6I	CTCTTC	3 cut(s)	306, 954, 1086
BstAFI	CTTAAG	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	319
BstBAI	YACGTR	1 cut(s)	858
BstBI	TTCGAA	1 cut(s)	687
BstC8I	GCNNGC	4 cut(s)	193, 834, 1111, 1122
BstDEI	CTNAG	6 cut(s)	519, 582, 801, 1056, 1061, 1143
BstF5I	GGATG	3 cut(s)	61, 500, 627
BstH2I	RGCGCY	1 cut(s)	1105
BstHHI	GCGC	1 cut(s)	1104
BstKTI	GATC	5 cut(s)	153, 274, 412, 790, 1039
BstMAI	GTCTC	2 cut(s)	522, 725
BstMBI	GATC	5 cut(s)	150, 271, 409, 787, 1036
BstMWI	GCNNNNNNNGC	5 cut(s)	15, 21, 24, 350, 1110
BstNSI	RCATGY	3 cut(s)	118, 173, 320
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	878
BstV1I	GCAGC	6 cut(s)	27, 36, 39, 557, 929, 1174
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	1036
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	1036
BsuRI	GGCC	2 cut(s)	557, 876
BtrI	CACGTC	1 cut(s)	950
BtsCI	GGATG	3 cut(s)	61, 500, 627
BtsIMutI	CAGTG	3 cut(s)	291, 527, 798
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	4 cut(s)	193, 834, 1111, 1122
CfoI	GCGC	1 cut(s)	1104
Cfr13I	GGNCC	3 cut(s)	874, 875, 1173
Csp6I	GTAC	4 cut(s)	320, 418, 964, 1154
CviAII	CATG	5 cut(s)	115, 170, 317, 475, 505
CviQI	GTAC	4 cut(s)	320, 418, 964, 1154
DdeI	CTNAG	6 cut(s)	519, 582, 801, 1056, 1061, 1143
DpnI	GATC	5 cut(s)	152, 273, 411, 789, 1038
DpnII	GATC	5 cut(s)	150, 271, 409, 787, 1036
DraI	TTTAAA	1 cut(s)	337
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	3 cut(s)	306, 954, 1086
Eam1105I	GACNNNNNGTC	1 cut(s)	802
EarI	CTCTTC	3 cut(s)	306, 954, 1086
Ecl136II	GAGCTC	2 cut(s)	48, 1060
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	3 cut(s)	50, 878, 1062
Eco47I	GGWCC	1 cut(s)	1173
Eco53kI	GAGCTC	2 cut(s)	48, 1060
Eco57I	CTGAAG	1 cut(s)	315
EcoICRI	GAGCTC	2 cut(s)	48, 1060
EcoO109I	RGGNCCY	1 cut(s)	875
EcoRI	GAATTC	2 cut(s)	175, 460
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	3 cut(s)	50, 878, 1062
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	5 cut(s)	118, 173, 320, 478, 508
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	5 cut(s)	114, 169, 316, 474, 504
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	6 cut(s)	16, 25, 28, 571, 918, 1188
FokI	GGATG	3 cut(s)	68, 487, 634
FriOI	GRGCYC	3 cut(s)	50, 878, 1062
Fsp4HI	GCNGC	6 cut(s)	16, 25, 28, 571, 918, 1188
FspBI	CTAG	4 cut(s)	434, 618, 821, 1040
GlaI	GCGC	1 cut(s)	1103
GluI	GCNGC	6 cut(s)	16, 25, 28, 571, 918, 1188
GsuI	CTGGAG	1 cut(s)	506
HaeII	RGCGCY	1 cut(s)	1105
HaeIII	GGCC	2 cut(s)	557, 876
HhaI	GCGC	1 cut(s)	1104
Hin1II	CATG	5 cut(s)	118, 173, 320, 478, 508
Hin6I	GCGC	1 cut(s)	1102
HinP1I	GCGC	1 cut(s)	1102
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	5 cut(s)	189, 542, 716, 830, 1122
HinfI	GANTC	7 cut(s)	125, 491, 515, 625, 662, 803, 1159
Hpy166II	GTNNAC	3 cut(s)	301, 373, 818
Hpy188I	TCNGA	7 cut(s)	187, 730, 756, 844, 954, 1064, 1196
Hpy188III	TCNNGA	5 cut(s)	154, 238, 251, 608, 1046
Hpy8I	GTNNAC	3 cut(s)	301, 373, 818
HpyAV	CCTTC	3 cut(s)	80, 925, 1009
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4IV	ACGT	2 cut(s)	857, 949
HpyCH4V	TGCA	7 cut(s)	90, 169, 195, 268, 474, 917, 1113
HpyF10VI	GCNNNNNNNGC	5 cut(s)	15, 21, 24, 350, 1110
HpyF3I	CTNAG	6 cut(s)	519, 582, 801, 1056, 1061, 1143
HpySE526I	ACGT	2 cut(s)	857, 949
Hsp92II	CATG	5 cut(s)	118, 173, 320, 478, 508
HspAI	GCGC	1 cut(s)	1102
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	5 cut(s)	150, 271, 409, 787, 1036
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	6 cut(s)	27, 36, 39, 557, 929, 1174
LweI	GCATC	3 cut(s)	77, 904, 1122
MaeI	CTAG	4 cut(s)	434, 618, 821, 1040
MaeII	ACGT	2 cut(s)	857, 949
MaeIII	GTNAC	4 cut(s)	453, 904, 945, 1128
MalI	GATC	5 cut(s)	152, 273, 411, 789, 1038
MboI	GATC	5 cut(s)	150, 271, 409, 787, 1036
MflI	RGATCY	1 cut(s)	1036
MhlI	GDGCHC	4 cut(s)	50, 857, 878, 1062
MluCI	AATT	9 cut(s)	75, 175, 213, 338, 460, 466, 633, 890, 1137
MlyI	GAGTC	4 cut(s)	500, 524, 634, 812
MroXI	GAANNNNTTC	2 cut(s)	69, 603
MseI	TTAA	6 cut(s)	336, 380, 393, 422, 632, 923
MslI	CAYNNNNRTG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	15, 21, 24, 350, 1110
NdeII	GATC	5 cut(s)	150, 271, 409, 787, 1036
NlaIII	CATG	5 cut(s)	118, 173, 320, 478, 508
NlaIV	GGNNCC	2 cut(s)	876, 877
NmuCI	GTSAC	2 cut(s)	904, 945
NspI	RCATGY	3 cut(s)	118, 173, 320
NspV	TTCGAA	1 cut(s)	687
OliI	CACNNNNGTG	1 cut(s)	296
PciI	ACATGT	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	69, 603
PfeI	GAWTC	3 cut(s)	125, 662, 1159
PkrI	GCNGC	6 cut(s)	17, 26, 29, 572, 919, 1189
PleI	GAGTC	4 cut(s)	499, 523, 633, 811
PpsI	GAGTC	4 cut(s)	499, 523, 633, 811
Ppu21I	YACGTR	1 cut(s)	858
PscI	ACATGT	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	923
Psp124BI	GAGCTC	2 cut(s)	50, 1062
PspN4I	GGNNCC	2 cut(s)	876, 877
PspOMI	GGGCCC	1 cut(s)	874
PspPI	GGNCC	3 cut(s)	874, 875, 1173
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	1036
RsaI	GTAC	4 cut(s)	321, 419, 965, 1155
RsaNI	GTAC	4 cut(s)	320, 418, 964, 1154
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	2 cut(s)	50, 1062
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	6 cut(s)	336, 380, 393, 422, 632, 923
SatI	GCNGC	6 cut(s)	16, 25, 28, 571, 918, 1188
Sau3AI	GATC	5 cut(s)	150, 271, 409, 787, 1036
Sau96I	GGNCC	3 cut(s)	874, 875, 1173
SbfI	CCTGCAGG	1 cut(s)	270
SchI	GAGTC	4 cut(s)	500, 524, 634, 812
SdaI	CCTGCAGG	1 cut(s)	270
SduI	GDGCHC	4 cut(s)	50, 857, 878, 1062
SfaNI	GCATC	3 cut(s)	77, 904, 1122
SfcI	CTRYAG	1 cut(s)	266
SfuI	TTCGAA	1 cut(s)	687
SinI	GGWCC	1 cut(s)	1173
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	6 cut(s)	236, 249, 329, 392, 644, 1044
SmoI	CTYRAG	6 cut(s)	236, 249, 329, 392, 644, 1044
Sse8387I	CCTGCAGG	1 cut(s)	270
Sse9I	AATT	9 cut(s)	75, 175, 213, 338, 460, 466, 633, 890, 1137
SsiI	CCGC	1 cut(s)	1031
SspMI	CTAG	4 cut(s)	434, 618, 821, 1040
SstI	GAGCTC	2 cut(s)	50, 1062
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	604
TaiI	ACGT	2 cut(s)	860, 952
TaqI	TCGA	4 cut(s)	607, 687, 795, 1116
TasI	AATT	9 cut(s)	75, 175, 213, 338, 460, 466, 633, 890, 1137
TatI	WGTACW	3 cut(s)	319, 417, 1153
TfiI	GAWTC	3 cut(s)	125, 662, 1159
Tru1I	TTAA	6 cut(s)	336, 380, 393, 422, 632, 923
Tru9I	TTAA	6 cut(s)	336, 380, 393, 422, 632, 923
TscAI	CASTG	3 cut(s)	298, 527, 805
TseFI	GTSAC	2 cut(s)	904, 945
TseI	GCWGC	6 cut(s)	15, 24, 27, 570, 917, 1187
Tsp45I	GTSAC	2 cut(s)	904, 945
TspDTI	ATGAA	2 cut(s)	489, 554
TspGWI	ACGGA	2 cut(s)	472, 1186
TspRI	CASTG	3 cut(s)	298, 527, 805
Vha464I	CTTAAG	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	1173
VspI	ATTAAT	1 cut(s)	923
XapI	RAATTY	4 cut(s)	175, 213, 460, 466
XceI	RCATGY	3 cut(s)	118, 173, 320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	895
XmnI	GAANNNNTTC	2 cut(s)	69, 603
XspI	CTAG	4 cut(s)	434, 618, 821, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.