Prupe.5G201100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0004972
Physical Location & Seq
Reverse (-)
16155966 .. 16160220
4255 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G201100.3

Sequence Viewer

Length: 1212 bp
ATGTCAAGCAGCACCAAGGGCAATACCGTCAGCTCTTTTGATGTTGAGGAACTCCTACAAATTGGGACAAGATGTAGAGAGCTAAAGAAAGAAAAAGACATGTTGAAAGAATCACACTCCCAAAGCTTCGGGCTAATCAGGAGATTAGAAGTACATGTGAATTCATTATCTGAAGCCTGCACAGAGGACAAGAAACAAATTCAAGTGTTAGAGAAAGAACTCAAGAACTGCTCCCAAGAAATTGATTACCTGCAGGATCAACTAAATGCAAGGAACACGGAAGTGAACCTCCTCGAAGAGCATACACATGGCCTTGAGTTCAAATTAGCAGACATGGAAAATTTACAAGAGACGGTTGACAGGTTAAGGGATGAACTTAAGAAGTCCTATTCAGAGCGCATGTTCTTAATGGAGGAACTAGAAAGCAAAGAGATAGAGTTACAGAATTCAGCTTTGTGCATAGATGAACTAGAGGAGTCAATTTCATCCATGTCATTAGAGTCTCAGTGTGAAATAGAGAGTATGAAGCTTGATATATTGGCCTTAGAGCACAGTTTCCTTGAAGTTAAAAAAATCCAGGAAGAAACTGTTCAAGAAAAGACTAGGATGAGTGAGTTAATTCAAGAGCTTGAGGTTCAATGTCAGAATGCACACAAAACTGTTGAAAGTTTATATATGGAAAATAAGGAACTCAGGAAGAAGCTTGATGCATCTGAGACAAGTACTAGGATATTCTGCCAGAGGGTTGAAAAATGGCTGGAAAAGGACAGAATTCAACTCGACTCAGAGTCTCCGTTGGGTCAACTAGAGGGAAATTACATATACTCAAAAGAAATGAGCAGTTGCGGAGAAGTCCTGGGCCCACTCTTTTCCAAACTGGCAATAGTAGTGGCACCAGATGCAGATTCAATAATGAAGATGGAGAAGATGTCACATCATATACAAGATTATGAACTTCTTGTGAAGCAATTAAAGGAAGAACTGAAAGAGGAAAAGTTGAAGGCAAAGGAAGAAGCAGAGGATCTAGCTCAAGAAATGGCTGAGCTCAGATACCGAATGACAGGTTTGCTTGAAGAAGAGTGTAAGCGCCGTGCTTGTATCGAACAAGCATCTTTACAAAGAATTGCTGAGTTAGAAGCACAGGTTACAAAAGAACGGACACAATCGGTGAAATCCTTTGCTGCTCTCCGGCATCTCAATGAAGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

46.77

Weight (kDa)

4.93

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 892
AciI CCGC 1 cut(s) 846
AclWI GGATC 2 cut(s) 264, 1029
AcsI RAATTY 5 cut(s) 160, 198, 340, 445, 771
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 153, 724
AflII CTTAAG 1 cut(s) 377
AflIII ACRYGT 2 cut(s) 99, 154
AhdI GACNNNNNGTC 1 cut(s) 787
AjnI CCWGG 2 cut(s) 576, 855
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 9 cut(s) 33, 82, 126, 452, 529, 628, 703, 1028, 1045
AluI AGCT 9 cut(s) 33, 82, 126, 452, 529, 628, 703, 1028, 1045
Alw21I GWGCWC 2 cut(s) 552, 1047
Alw26I GTCTC 4 cut(s) 344, 507, 710, 795
AlwI GGATC 2 cut(s) 264, 1029
AoxI GGCC 3 cut(s) 310, 540, 859
ApaI GGGCCC 1 cut(s) 863
ApeKI GCWGC 2 cut(s) 9, 1181
ApoI RAATTY 5 cut(s) 160, 198, 340, 445, 771
Asp700I GAANNNNTTC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 399, 1089
AspS9I GGNCC 2 cut(s) 859, 860
AsuHPI GGTGA 1 cut(s) 1180
BaeGI GKGCMC 1 cut(s) 863
BanI GGYRCC 1 cut(s) 892
BanII GRGCYC 2 cut(s) 863, 1047
Bbv12I GWGCWC 2 cut(s) 552, 1047
BbvI GCAGC 2 cut(s) 21, 1168
BccI CCATC 1 cut(s) 913
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 2 cut(s) 578, 857
BcoDI GTCTC 4 cut(s) 344, 507, 710, 795
BfaI CTAG 6 cut(s) 419, 470, 603, 726, 806, 1025
BfmI CTRYAG 1 cut(s) 251
BfoI RGCGCY 1 cut(s) 1090
BfrI CTTAAG 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 2 cut(s) 10, 1182
BlpI GCTNAGC 1 cut(s) 1041
BlsI GCNGC 2 cut(s) 11, 1183
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 2 cut(s) 578, 857
BmeRI GACNNNNNGTC 1 cut(s) 787
BmgT120I GGNCC 2 cut(s) 859, 860
BmiI GGNNCC 2 cut(s) 861, 894
BmrFI CCNGG 2 cut(s) 578, 857
BmsI GCATC 5 cut(s) 697, 719, 889, 1118, 1201
Bpu1102I GCTNAGC 1 cut(s) 1041
BpuEI CTTGAG 4 cut(s) 206, 335, 650, 1014
BsaJI CCNNGG 2 cut(s) 15, 856
BsaXI ACNNNNNCTCC 2 cut(s) 914, 944
Bse1I ACTGG 1 cut(s) 882
BseBI CCWGG 2 cut(s) 578, 857
BseDI CCNNGG 2 cut(s) 15, 856
BseGI GGATG 3 cut(s) 376, 485, 612
BseMII CTCAG 7 cut(s) 518, 705, 706, 798, 1032, 1060, 1119
BseNI ACTGG 1 cut(s) 882
BseRI GAGGAG 2 cut(s) 281, 488
BseSI GKGCMC 1 cut(s) 863
BseXI GCAGC 2 cut(s) 21, 1168
BsgI GTGCAG 1 cut(s) 163
BshFI GGCC 3 cut(s) 312, 542, 861
BshNI GGYRCC 1 cut(s) 892
BsiHKAI GWGCWC 2 cut(s) 552, 1047
BsiSI CCGG 1 cut(s) 1189
BslFI GGGAC 1 cut(s) 79
BsmAI GTCTC 4 cut(s) 344, 507, 710, 795
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 3 cut(s) 312, 542, 861
Bsp120I GGGCCC 1 cut(s) 859
Bsp1286I GDGCHC 3 cut(s) 552, 863, 1047
Bsp143I GATC 2 cut(s) 256, 1021
Bsp1720I GCTNAGC 1 cut(s) 1041
BspACI CCGC 1 cut(s) 846
BspANI GGCC 3 cut(s) 312, 542, 861
BspCNI CTCAG 7 cut(s) 517, 705, 706, 797, 1033, 1059, 1120
BspLI GGNNCC 2 cut(s) 861, 894
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 2 cut(s) 264, 1029
BspQI GCTCTTC 1 cut(s) 291
BspT107I GGYRCC 1 cut(s) 892
BspTI CTTAAG 1 cut(s) 377
BsrI ACTGG 1 cut(s) 882
BssECI CCNNGG 2 cut(s) 15, 856
BssMI GATC 2 cut(s) 256, 1021
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 578, 857
Bst4CI ACNGT 5 cut(s) 28, 355, 554, 589, 661
Bst6I CTCTTC 2 cut(s) 291, 1071
BstAFI CTTAAG 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 8 cut(s) 504, 544, 692, 714, 784, 1041, 1046, 1128
BstF5I GGATG 3 cut(s) 376, 485, 612
BstH2I RGCGCY 1 cut(s) 1090
BstHHI GCGC 2 cut(s) 399, 1089
BstKTI GATC 2 cut(s) 259, 1024
BstMAI GTCTC 4 cut(s) 344, 507, 710, 795
BstMBI GATC 2 cut(s) 256, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 18, 899
BstNI CCWGG 2 cut(s) 578, 857
BstNSI RCATGY 3 cut(s) 103, 158, 403
BstSCI CCNGG 2 cut(s) 576, 855
BstSFI CTRYAG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 863
BstV1I GCAGC 2 cut(s) 21, 1168
BstX2I RGATCY 1 cut(s) 1021
BstYI RGATCY 1 cut(s) 1021
BsuRI GGCC 3 cut(s) 312, 542, 861
BtsCI GGATG 3 cut(s) 376, 485, 612
BtsIMutI CAGTG 1 cut(s) 512
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 2 cut(s) 399, 1089
Cfr13I GGNCC 2 cut(s) 859, 860
Csp6I GTAC 2 cut(s) 152, 723
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 6 cut(s) 100, 155, 308, 334, 400, 490
CviQI GTAC 2 cut(s) 152, 723
DdeI CTNAG 8 cut(s) 504, 544, 692, 714, 784, 1041, 1046, 1128
DpnI GATC 2 cut(s) 258, 1023
DpnII GATC 2 cut(s) 256, 1021
DriI GACNNNNNGTC 1 cut(s) 787
Eam1104I CTCTTC 2 cut(s) 291, 1071
Eam1105I GACNNNNNGTC 1 cut(s) 787
EarI CTCTTC 2 cut(s) 291, 1071
Ecl136II GAGCTC 1 cut(s) 1045
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 2 cut(s) 863, 1047
Eco53kI GAGCTC 1 cut(s) 1045
Eco57I CTGAAG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 1045
EcoRI GAATTC 3 cut(s) 160, 445, 771
EcoRII CCWGG 2 cut(s) 576, 855
EcoT14I CCWWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 712
EcoT38I GRGCYC 2 cut(s) 863, 1047
ErhI CCWWGG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 6 cut(s) 103, 158, 311, 337, 403, 493
FaqI GGGAC 1 cut(s) 79
FatI CATG 6 cut(s) 99, 154, 307, 333, 399, 489
Fnu4HI GCNGC 2 cut(s) 10, 1182
FokI GGATG 3 cut(s) 383, 472, 619
FriOI GRGCYC 2 cut(s) 863, 1047
Fsp4HI GCNGC 2 cut(s) 10, 1182
FspBI CTAG 6 cut(s) 419, 470, 603, 726, 806, 1025
GlaI GCGC 2 cut(s) 398, 1088
GluI GCNGC 2 cut(s) 10, 1182
HaeII RGCGCY 1 cut(s) 1090
HaeIII GGCC 3 cut(s) 312, 542, 861
HapII CCGG 1 cut(s) 1189
HhaI GCGC 2 cut(s) 399, 1089
Hin1II CATG 6 cut(s) 103, 158, 311, 337, 403, 493
Hin6I GCGC 2 cut(s) 397, 1087
HinP1I GCGC 2 cut(s) 397, 1087
HincII GTYRAC 2 cut(s) 358, 803
HindII GTYRAC 2 cut(s) 358, 803
HindIII AAGCTT 3 cut(s) 124, 527, 701
HinfI GANTC 6 cut(s) 110, 476, 500, 782, 788, 905
HpaII CCGG 1 cut(s) 1189
HphI GGTGA 1 cut(s) 1180
Hpy166II GTNNAC 3 cut(s) 286, 358, 803
Hpy188I TCNGA 6 cut(s) 172, 394, 645, 715, 787, 1049
Hpy188III TCNNGA 6 cut(s) 139, 223, 593, 623, 694, 1031
Hpy8I GTNNAC 3 cut(s) 286, 358, 803
HpyAV CCTTC 1 cut(s) 994
HpyCH4III ACNGT 5 cut(s) 28, 355, 554, 589, 661
HpyCH4V TGCA 7 cut(s) 180, 253, 269, 459, 650, 710, 902
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 899
HpyF3I CTNAG 8 cut(s) 504, 544, 692, 714, 784, 1041, 1046, 1128
Hsp92II CATG 6 cut(s) 103, 158, 311, 337, 403, 493
HspAI GCGC 2 cut(s) 397, 1087
Kzo9I GATC 2 cut(s) 256, 1021
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 2 cut(s) 21, 1168
LweI GCATC 5 cut(s) 697, 719, 889, 1118, 1201
MaeI CTAG 6 cut(s) 419, 470, 603, 726, 806, 1025
MaeIII GTNAC 3 cut(s) 438, 930, 1144
MalI GATC 2 cut(s) 258, 1023
MboI GATC 2 cut(s) 256, 1021
MboII GAAGA 9 cut(s) 308, 593, 709, 928, 937, 989, 1022, 1085, 1088
MflI RGATCY 1 cut(s) 1021
MhlI GDGCHC 3 cut(s) 552, 863, 1047
MlyI GAGTC 4 cut(s) 485, 509, 776, 797
Mph1103I ATGCAT 1 cut(s) 712
MroXI GAANNNNTTC 1 cut(s) 588
MseI TTAA 6 cut(s) 365, 378, 407, 567, 617, 971
MslI CAYNNNNRTG 3 cut(s) 281, 306, 1197
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 1 cut(s) 1189
MspR9I CCNGG 2 cut(s) 578, 857
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 2 cut(s) 578, 857
MwoI GCNNNNNNNGC 2 cut(s) 18, 899
NdeII GATC 2 cut(s) 256, 1021
NlaIII CATG 6 cut(s) 103, 158, 311, 337, 403, 493
NlaIV GGNNCC 2 cut(s) 861, 894
NmuCI GTSAC 1 cut(s) 930
NsiI ATGCAT 1 cut(s) 712
NspI RCATGY 3 cut(s) 103, 158, 403
OliI CACNNNNGTG 1 cut(s) 281
PciI ACATGT 2 cut(s) 99, 154
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 652
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 110, 905
PfoI TCCNGGA 1 cut(s) 576
PkrI GCNGC 2 cut(s) 11, 1183
PleI GAGTC 4 cut(s) 484, 508, 776, 796
PpsI GAGTC 4 cut(s) 484, 508, 776, 796
PscI ACATGT 2 cut(s) 99, 154
Psp124BI GAGCTC 1 cut(s) 1047
Psp6I CCWGG 2 cut(s) 576, 855
PspGI CCWGG 2 cut(s) 576, 855
PspN4I GGNNCC 2 cut(s) 861, 894
PspOMI GGGCCC 1 cut(s) 859
PspPI GGNCC 2 cut(s) 859, 860
PstI CTGCAG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 1021
RsaI GTAC 2 cut(s) 153, 724
RsaNI GTAC 2 cut(s) 152, 723
RseI CAYNNNNRTG 3 cut(s) 281, 306, 1197
SacI GAGCTC 1 cut(s) 1047
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 6 cut(s) 365, 378, 407, 567, 617, 971
SatI GCNGC 2 cut(s) 10, 1182
Sau3AI GATC 2 cut(s) 256, 1021
Sau96I GGNCC 2 cut(s) 859, 860
SbfI CCTGCAGG 1 cut(s) 255
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 4 cut(s) 485, 509, 776, 797
ScrFI CCNGG 2 cut(s) 578, 857
SdaI CCTGCAGG 1 cut(s) 255
SduI GDGCHC 3 cut(s) 552, 863, 1047
SfaNI GCATC 5 cut(s) 697, 719, 889, 1118, 1201
SfcI CTRYAG 1 cut(s) 251
SmiMI CAYNNNNRTG 3 cut(s) 281, 306, 1197
SmlI CTYRAG 5 cut(s) 221, 314, 377, 629, 1029
SmoI CTYRAG 5 cut(s) 221, 314, 377, 629, 1029
Sse8387I CCTGCAGG 1 cut(s) 255
SsiI CCGC 1 cut(s) 846
SspMI CTAG 6 cut(s) 419, 470, 603, 726, 806, 1025
SstI GAGCTC 1 cut(s) 1047
StyD4I CCNGG 2 cut(s) 576, 855
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 5 cut(s) 28, 355, 554, 589, 661
TaqI TCGA 3 cut(s) 294, 780, 1101
TatI WGTACW 2 cut(s) 151, 722
TfiI GAWTC 2 cut(s) 110, 905
Tru1I TTAA 6 cut(s) 365, 378, 407, 567, 617, 971
Tru9I TTAA 6 cut(s) 365, 378, 407, 567, 617, 971
TscAI CASTG 1 cut(s) 512
TseFI GTSAC 1 cut(s) 930
TseI GCWGC 2 cut(s) 9, 1181
Tsp45I GTSAC 1 cut(s) 930
TspDTI ATGAA 7 cut(s) 153, 387, 474, 480, 539, 929, 966
TspGWI ACGGA 3 cut(s) 293, 783, 1171
TspRI CASTG 1 cut(s) 512
Vha464I CTTAAG 1 cut(s) 377
XapI RAATTY 5 cut(s) 160, 198, 340, 445, 771
XceI RCATGY 3 cut(s) 103, 158, 403
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 6 cut(s) 419, 470, 603, 726, 806, 1025
ZrmI AGTACT 1 cut(s) 724
Zsp2I ATGCAT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.