RLG00000005117

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004972
Physical Location & Seq
Forward (+)
65133655 .. 65136638
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005117

Sequence Viewer

Length: 1317 bp
ATGTCGAACAGCAGCGGGGGCAGCAATAGTGACAGCTCGTTCGATATTGAGGAGCTCCTGCAGATTGGGACAAGATGCAGAGAGCTTAAGAAAGAAAAGGACCTGTTGAAAGAATCACAATCCCAAAGCTTCGGGCTAATCAGGAGTTTGGATGTACATATGAAGTCATTGTCCGAATTCCGCACAGAAGACAAGAAACAAATTCAAATTTTAGAGAAAGAACTCAAGAACTGCTCTCAAGAAATAGATTACCTTCAGGATCAATTAAATGCAAGGGACACAGAAGTGACCTTTCTTGAAGAGCATGTACATAGCCTTGAGTTGAAATTAGCAGACACAGAGAATTTACAGGTGATAGTTGACAGGTTAAGAGATGAGCTGAAGAAGTCCTATTCAGAGTGCTTGTTCTTAATGCAAGAACTGGAAAGCAAAGAAGTGGCGTTACAGAATTCAAATTTGTGCATACAGAAACTAGAGGAGTCAGTTTCATCCATGTCATTAGAGTCTCAGTGTGAAATTGAGAGTCTGAAGCTTGATATATTAGCCTTGGAGCAGAGTTGCCTTGAAGCTAAGAAAGTCCAGGAAGAAACTGTTCGAGAAAAAACTAGGATGAAGGAGTTAATTCAAGAACTTGAGGTTCAATGTCAGGATGCACAGAAAACTACTGATTGCTTAGATATGGAAAATAAGGAACTAAGGGAGAAGCTTGATGCCTCAGAGACAAATACTAGGATCTTTTGTCAGAGGGTTGAAAAATTGCTGGAAGAGGATAGATTTGCATTCAAGTCAGAGTCTTTGTTAAGTGAGCTAGAGGGAAGGCACACATTTTCAATAGATATGAGCACTTGTGGAGAAGTCTTGGAGTCACTTTTTTCCAAATTGGCAATGGTACTGGCACCAGATGCCGATTTGATAGTGAAGATGAAGGAGATGTCACACCAGATACATGAATATGAACGTCTTATGAAGCAACTAAAGGAAGAACTGAGAGAAGAAAAGTTGAAGGCAAAAGAAGAAGCTGAGGATCTGGCTCAAGAAATGGCTGAGCTTAGATACCAACTTACAGGCTTGCTTGAAGACGAGTGTAAGCGTCGTGCTTACATTGAACAAGCATCTCTGCAAAGAATTGCTGAGTTAGAAGCACAGGTTCAAAAAGCACGGACAAAATCCTTTGCTGAGGTCCATAAGCCGTGCTATATGACAATTCCAGATTTGAGTGATTTGGTGAAGGTTATGCTTGGAAAGACAACTGGCTTTCATTCAGCCTGGCATATCTTTCGGCTAGAAGTGCAGACAGATCCCGGGACGAAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

50.71

Weight (kDa)

4.91

Isoelectric Point (pI)

53.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 895
AciI CCGC 2 cut(s) 15, 181
AclWI GGATC 4 cut(s) 267, 740, 1032, 1292
AcsI RAATTY 6 cut(s) 176, 201, 207, 343, 448, 454
AcuI CTGAAG 3 cut(s) 239, 401, 548
AfaI GTAC 3 cut(s) 156, 309, 891
AflII CTTAAG 1 cut(s) 86
AjnI CCWGG 2 cut(s) 579, 1265
AleI CACNNNNGTG 1 cut(s) 284
Alw21I GWGCWC 2 cut(s) 57, 845
Alw26I GTCTC 2 cut(s) 510, 713
AlwI GGATC 4 cut(s) 267, 740, 1032, 1292
Ama87I CYCGRG 1 cut(s) 1301
ApeKI GCWGC 2 cut(s) 12, 21
ApoI RAATTY 6 cut(s) 176, 201, 207, 343, 448, 454
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 100, 1180
AsuC2I CCSGG 2 cut(s) 1302, 1303
AsuHPI GGTGA 2 cut(s) 364, 1237
AvaI CYCGRG 1 cut(s) 1301
AvaII GGWCC 2 cut(s) 100, 1180
BanI GGYRCC 1 cut(s) 895
BanII GRGCYC 1 cut(s) 57
BarI GAAGNNNNNNTAC 4 cut(s) 291, 323, 426, 458
BbsI GAAGAC 2 cut(s) 195, 1083
Bbv12I GWGCWC 2 cut(s) 57, 845
BbvCI CCTCAGC 2 cut(s) 1020, 1176
BbvI GCAGC 2 cut(s) 24, 33
BceAI ACGGC 1 cut(s) 1174
BcgI CGANNNNNNTGC 2 cut(s) 1259, 1293
BciT130I CCWGG 2 cut(s) 581, 1267
BcnI CCSGG 2 cut(s) 1302, 1303
BcoDI GTCTC 2 cut(s) 510, 713
BfaI CTAG 5 cut(s) 473, 606, 729, 809, 1283
BfmI CTRYAG 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 86
BisI GCNGC 2 cut(s) 13, 22
BlpI GCTNAGC 1 cut(s) 1044
BlsI GCNGC 2 cut(s) 14, 23
Bme1390I CCNGG 4 cut(s) 581, 1267, 1302, 1303
Bme18I GGWCC 2 cut(s) 100, 1180
BmeT110I CYCGRG 1 cut(s) 1301
BmgT120I GGNCC 2 cut(s) 100, 1180
BmiI GGNNCC 1 cut(s) 897
BmrFI CCNGG 4 cut(s) 581, 1267, 1302, 1303
BmsI GCATC 5 cut(s) 65, 640, 700, 892, 1121
BpiI GAAGAC 2 cut(s) 195, 1083
Bpu10I CCTNAGC 2 cut(s) 1020, 1176
Bpu1102I GCTNAGC 1 cut(s) 1044
BpuEI CTTGAG 5 cut(s) 209, 222, 338, 653, 1017
BpuMI CCSGG 2 cut(s) 1302, 1303
BsaJI CCNNGG 2 cut(s) 546, 1301
Bse1I ACTGG 3 cut(s) 426, 897, 1255
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 2 cut(s) 581, 1267
BseDI CCNNGG 2 cut(s) 546, 1301
BseGI GGATG 4 cut(s) 157, 488, 615, 655
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 7 cut(s) 521, 729, 977, 1011, 1035, 1122, 1167
BseNI ACTGG 3 cut(s) 426, 897, 1255
BseRI GAGGAG 2 cut(s) 65, 491
BseXI GCAGC 2 cut(s) 24, 33
BsgI GTGCAG 1 cut(s) 1310
BshNI GGYRCC 1 cut(s) 895
BsiHKAI GWGCWC 2 cut(s) 57, 845
BsiHKCI CYCGRG 1 cut(s) 1301
BsiSI CCGG 1 cut(s) 1302
BslFI GGGAC 2 cut(s) 82, 290
BsmAI GTCTC 2 cut(s) 510, 713
BsmFI GGGAC 2 cut(s) 82, 290
BsmI GAATGC 1 cut(s) 779
BsoBI CYCGRG 1 cut(s) 1301
Bsp1286I GDGCHC 2 cut(s) 57, 845
Bsp1407I TGTACA 2 cut(s) 154, 307
Bsp143I GATC 4 cut(s) 259, 732, 1024, 1297
Bsp1720I GCTNAGC 1 cut(s) 1044
BspACI CCGC 2 cut(s) 15, 181
BspCNI CTCAG 7 cut(s) 520, 728, 978, 1012, 1036, 1123, 1168
BspLI GGNNCC 1 cut(s) 897
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 4 cut(s) 267, 740, 1032, 1292
BspQI GCTCTTC 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 895
BspTI CTTAAG 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 891
BsrGI TGTACA 2 cut(s) 154, 307
BsrI ACTGG 3 cut(s) 426, 897, 1255
BssECI CCNNGG 2 cut(s) 546, 1301
BssMI GATC 4 cut(s) 259, 732, 1024, 1297
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 2 cut(s) 581, 1267
Bst4CI ACNGT 1 cut(s) 592
Bst6I CTCTTC 2 cut(s) 294, 759
BstAFI CTTAAG 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 902
BstAUI TGTACA 2 cut(s) 154, 307
BstC8I GCNNGC 1 cut(s) 1070
BstF5I GGATG 4 cut(s) 157, 488, 615, 655
BstKTI GATC 4 cut(s) 262, 735, 1027, 1300
BstMAI GTCTC 2 cut(s) 510, 713
BstMBI GATC 4 cut(s) 259, 732, 1024, 1297
BstMWI GCNNNNNNNGC 4 cut(s) 18, 21, 902, 1288
BstNI CCWGG 2 cut(s) 581, 1267
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 4 cut(s) 579, 1265, 1300, 1301
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 24, 33
BstV2I GAAGAC 2 cut(s) 195, 1083
BstX2I RGATCY 3 cut(s) 732, 1024, 1297
BstYI RGATCY 3 cut(s) 732, 1024, 1297
BtsCI GGATG 4 cut(s) 157, 488, 615, 655
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 1 cut(s) 1070
Cfr13I GGNCC 2 cut(s) 100, 1180
Cfr9I CCCGGG 1 cut(s) 1301
CseI GACGC 1 cut(s) 1079
Csp6I GTAC 3 cut(s) 155, 308, 890
CviAII CATG 3 cut(s) 305, 493, 947
CviQI GTAC 3 cut(s) 155, 308, 890
DpnI GATC 4 cut(s) 261, 734, 1026, 1299
DpnII GATC 4 cut(s) 259, 732, 1024, 1297
Eam1104I CTCTTC 2 cut(s) 294, 759
EarI CTCTTC 2 cut(s) 294, 759
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 100, 1180
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 3 cut(s) 239, 401, 548
Eco88I CYCGRG 1 cut(s) 1301
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 100
EcoRI GAATTC 2 cut(s) 176, 448
EcoRII CCWGG 2 cut(s) 579, 1265
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 3 cut(s) 308, 496, 950
FaqI GGGAC 2 cut(s) 82, 290
FatI CATG 3 cut(s) 304, 492, 946
FauI CCCGC 1 cut(s) 8
FauNDI CATATG 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 13, 22
FokI GGATG 4 cut(s) 164, 475, 622, 662
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 13, 22
FspBI CTAG 5 cut(s) 473, 606, 729, 809, 1283
GluI GCNGC 2 cut(s) 13, 22
HapII CCGG 1 cut(s) 1302
HgaI GACGC 1 cut(s) 1079
Hin1II CATG 3 cut(s) 308, 496, 950
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 3 cut(s) 127, 530, 704
HinfI GANTC 6 cut(s) 113, 479, 503, 523, 791, 863
HpaII CCGG 1 cut(s) 1302
HphI GGTGA 2 cut(s) 364, 1237
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 7 cut(s) 175, 397, 528, 718, 744, 790, 1316
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 1 cut(s) 1095
HpyAV CCTTC 6 cut(s) 263, 607, 810, 919, 997, 1222
HpyCH4III ACNGT 1 cut(s) 592
HpyCH4IV ACGT 1 cut(s) 958
HpyCH4V TGCA 9 cut(s) 61, 78, 272, 415, 462, 653, 779, 1120, 1291
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 21, 902, 1288
HpySE526I ACGT 1 cut(s) 958
Hsp92II CATG 3 cut(s) 308, 496, 950
Kzo9I GATC 4 cut(s) 259, 732, 1024, 1297
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 3 cut(s) 52, 60, 550
Lsp1109I GCAGC 2 cut(s) 24, 33
LweI GCATC 5 cut(s) 65, 640, 700, 892, 1121
MaeI CTAG 5 cut(s) 473, 606, 729, 809, 1283
MaeII ACGT 1 cut(s) 958
MaeIII GTNAC 5 cut(s) 29, 286, 441, 864, 933
MalI GATC 4 cut(s) 261, 734, 1026, 1299
MboI GATC 4 cut(s) 259, 732, 1024, 1297
MflI RGATCY 3 cut(s) 732, 1024, 1297
MhlI GDGCHC 2 cut(s) 57, 845
MlyI GAGTC 5 cut(s) 488, 512, 532, 800, 872
MnlI CCTC 9 cut(s) 43, 469, 628, 724, 738, 760, 805, 1015, 1171
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 6 cut(s) 87, 266, 368, 410, 620, 800
MslI CAYNNNNRTG 2 cut(s) 284, 951
MspA1I CMGCKG 1 cut(s) 15
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 1 cut(s) 1302
MspR9I CCNGG 4 cut(s) 581, 1267, 1302, 1303
Mva1269I GAATGC 1 cut(s) 779
MvaI CCWGG 2 cut(s) 581, 1267
MwoI GCNNNNNNNGC 4 cut(s) 18, 21, 902, 1288
NciI CCSGG 2 cut(s) 1302, 1303
NdeI CATATG 1 cut(s) 159
NdeII GATC 4 cut(s) 259, 732, 1024, 1297
NlaIII CATG 3 cut(s) 308, 496, 950
NlaIV GGNNCC 1 cut(s) 897
NmuCI GTSAC 4 cut(s) 29, 286, 864, 933
NspI RCATGY 1 cut(s) 308
OliI CACNNNNGTG 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 294
PctI GAATGC 1 cut(s) 779
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 1 cut(s) 113
PfoI TCCNGGA 1 cut(s) 579
PkrI GCNGC 2 cut(s) 14, 23
PleI GAGTC 5 cut(s) 487, 511, 531, 799, 871
PpsI GAGTC 5 cut(s) 487, 511, 531, 799, 871
PpuMI RGGWCCY 1 cut(s) 100
Psp124BI GAGCTC 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 100
Psp6I CCWGG 2 cut(s) 579, 1265
PspGI CCWGG 2 cut(s) 579, 1265
PspN4I GGNNCC 1 cut(s) 897
PspPI GGNCC 2 cut(s) 100, 1180
PspPPI RGGWCCY 1 cut(s) 100
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 3 cut(s) 732, 1024, 1297
RsaI GTAC 3 cut(s) 156, 309, 891
RsaNI GTAC 3 cut(s) 155, 308, 890
RseI CAYNNNNRTG 2 cut(s) 284, 951
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 6 cut(s) 87, 266, 368, 410, 620, 800
SatI GCNGC 2 cut(s) 13, 22
Sau3AI GATC 4 cut(s) 259, 732, 1024, 1297
Sau96I GGNCC 2 cut(s) 100, 1180
SchI GAGTC 5 cut(s) 488, 512, 532, 800, 872
ScrFI CCNGG 4 cut(s) 581, 1267, 1302, 1303
SduI GDGCHC 2 cut(s) 57, 845
SfaNI GCATC 5 cut(s) 65, 640, 700, 892, 1121
SfcI CTRYAG 1 cut(s) 59
SinI GGWCC 2 cut(s) 100, 1180
SmaI CCCGGG 1 cut(s) 1303
SmiMI CAYNNNNRTG 2 cut(s) 284, 951
SmlI CTYRAG 6 cut(s) 86, 224, 237, 317, 632, 1032
SmoI CTYRAG 6 cut(s) 86, 224, 237, 317, 632, 1032
SsiI CCGC 2 cut(s) 15, 181
SspMI CTAG 5 cut(s) 473, 606, 729, 809, 1283
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 4 cut(s) 579, 1265, 1300, 1301
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 592
TaiI ACGT 1 cut(s) 961
TaqI TCGA 3 cut(s) 5, 42, 595
TatI WGTACW 2 cut(s) 154, 307
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 6 cut(s) 87, 266, 368, 410, 620, 800
Tru9I TTAA 6 cut(s) 87, 266, 368, 410, 620, 800
TscAI CASTG 1 cut(s) 515
TseFI GTSAC 4 cut(s) 29, 286, 864, 933
TseI GCWGC 2 cut(s) 12, 21
Tsp45I GTSAC 4 cut(s) 29, 286, 864, 933
TspDTI ATGAA 8 cut(s) 176, 477, 626, 938, 963, 969, 980, 1247
TspGWI ACGGA 1 cut(s) 1174
TspMI CCCGGG 1 cut(s) 1301
TspRI CASTG 1 cut(s) 515
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 100, 1180
XapI RAATTY 6 cut(s) 176, 201, 207, 343, 448, 454
XceI RCATGY 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XmaI CCCGGG 1 cut(s) 1301
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 5 cut(s) 473, 606, 729, 809, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.