Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Forward (+)

63531559 .. 63535275

Gene Structure 3717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGTCGAACAGCAGCGGGGGCAGCAATAGTGACAGCTCGTTCGATATTGAGGAGCTCCTGCAGATTGGGACAAGATGCAGACAGCTTAAGAAAGAAAAGGACATGTTGAAAGAATCACAATCCCAAAGCTTCGGGCTAATCATCAGGAGTTTGGATGTACATATGAAGTCATTGTCCGAATTCCGCACAGAAGACAAGAAACAAATTCAAATTTTAGAGAAAGAACTCAAGAACTGCTCTCAAGAAATAGATTACCTTCAGGATCAATTAAATGCAAGGGACACAGAAGTGAACTTTCTTGAAGAGCATGTACATAGCCTTGAGTTAAAATTAGCAGACACAGAGAATTTACAGGTGACAGTTGACAGGTTAAGAGATGAGCTGAAGAAGTCCTATTCAGAGTGCTTGTTCTTAATGCAAGAACTGGAAAGCAGAGAAGTGGAGTTACAGAATTCAAATTTGTGCATAGAGAAACTAGAGGAGTCAGTTTCATCCATGTCGTTAGAGTCTCAGTGTGAAATTGAGAGTCTGAAGCTTGATATATTAGCCTTGGAGCAGAGTTGCCTTGAAGCTAAGAAAGTCCAGGAAGAAACTGTTCGAGAAAAAACTAGGATGAATGAGTTAATCCAAGAACTTGAGAGGGTTGAAAAATTGCTGGAAGAGGATAGAATTGAATTCAAGTCAGAGTCTTTGTTAAGTGAGCTAGAGGGAAAGTGCACATTTTCAATAGATATGAGCACTTGTGGAGAAGTCTTGGAGTCCCTTTTTTCCAAATTGGCAATGGTACTGGCACCAGATGCCAATTTGATAGTGAAGATGAAGGAGATGTCACACCAGATACATGAATATGAACTTCTTGTGAATCAACTAAAGGAAGTACTGAGAGAAGAAAAGTTGAAGGCAAAAGAAGAAGCTGAGGATCTGGCTCAAGAAATGGCTGAGCTTAGATACCAACTTACAGGCTTGCTTGAAGACGAGTGTAAGCGTCGTGCTTACATTGAACAAGCATCTCTGCAAAGAATTGCTGAGTTAGAAGCGCAGGCGTGCTATATGACAATTCCAGATTTGAGTGATTTGGTGAAGGTTATGCTTGGAAAGACAACTTGTGGCTACAAGTGCAGACAGATCCCCGGACCAAAAACTGACACAGGTCAGTCTCCCAATGGAACACAACTTCAGACTGAGATGAAATCTATTTTTGTCGAGGATCTCCAACAGGGTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

46.84

Weight (kDa)

4.69

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	790
AciI	CCGC	2 cut(s)	15, 184
AclWI	GGATC	4 cut(s)	270, 927, 1120, 1215
AcsI	RAATTY	7 cut(s)	179, 204, 210, 346, 451, 457, 674
AcuI	CTGAAG	4 cut(s)	242, 404, 551, 1160
AfaI	GTAC	4 cut(s)	159, 312, 786, 879
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	582
AleI	CACNNNNGTG	1 cut(s)	287
Alw21I	GWGCWC	3 cut(s)	57, 719, 740
Alw26I	GTCTC	2 cut(s)	513, 1161
Alw44I	GTGCAC	1 cut(s)	715
AlwI	GGATC	4 cut(s)	270, 927, 1120, 1215
ApaLI	GTGCAC	1 cut(s)	715
ApeKI	GCWGC	2 cut(s)	12, 21
ApoI	RAATTY	7 cut(s)	179, 204, 210, 346, 451, 457, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	1039
AspS9I	GGNCC	1 cut(s)	1133
AsuC2I	CCSGG	1 cut(s)	1131
AsuHPI	GGTGA	2 cut(s)	367, 1090
AvaII	GGWCC	1 cut(s)	1133
BaeGI	GKGCMC	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	57
BarI	GAAGNNNNNNTAC	4 cut(s)	294, 326, 429, 461
BbsI	GAAGAC	2 cut(s)	198, 978
Bbv12I	GWGCWC	3 cut(s)	57, 719, 740
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	2 cut(s)	24, 33
BciT130I	CCWGG	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	1131
BcoDI	GTCTC	2 cut(s)	513, 1161
BfaI	CTAG	3 cut(s)	476, 609, 704
BfmI	CTRYAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	13, 22
BlpI	GCTNAGC	1 cut(s)	939
BlsI	GCNGC	2 cut(s)	14, 23
BmcAI	AGTACT	1 cut(s)	879
Bme1390I	CCNGG	2 cut(s)	584, 1131
Bme18I	GGWCC	1 cut(s)	1133
BmgT120I	GGNCC	1 cut(s)	1133
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	2 cut(s)	584, 1131
BmsI	GCATC	3 cut(s)	65, 787, 1016
BoxI	GACNNNNGTC	1 cut(s)	1149
BpiI	GAAGAC	2 cut(s)	198, 978
Bpu10I	CCTNAGC	1 cut(s)	915
Bpu1102I	GCTNAGC	1 cut(s)	939
BpuEI	CTTGAG	5 cut(s)	212, 225, 341, 656, 912
BpuMI	CCSGG	1 cut(s)	1131
BsaJI	CCNNGG	2 cut(s)	549, 1129
Bse1I	ACTGG	2 cut(s)	429, 792
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	549, 1129
BseGI	GGATG	3 cut(s)	160, 491, 618
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	6 cut(s)	524, 872, 906, 930, 1017, 1173
BseNI	ACTGG	2 cut(s)	429, 792
BseRI	GAGGAG	2 cut(s)	65, 494
BseSI	GKGCMC	1 cut(s)	719
BseXI	GCAGC	2 cut(s)	24, 33
BsgI	GTGCAG	1 cut(s)	1138
BshNI	GGYRCC	1 cut(s)	790
BsiHKAI	GWGCWC	3 cut(s)	57, 719, 740
BsiSI	CCGG	1 cut(s)	1131
BslFI	GGGAC	3 cut(s)	82, 293, 745
BsmAI	GTCTC	2 cut(s)	513, 1161
BsmFI	GGGAC	3 cut(s)	82, 293, 745
Bsp1286I	GDGCHC	3 cut(s)	57, 719, 740
Bsp1407I	TGTACA	2 cut(s)	157, 310
Bsp143I	GATC	4 cut(s)	262, 919, 1125, 1207
Bsp1720I	GCTNAGC	1 cut(s)	939
BspACI	CCGC	2 cut(s)	15, 184
BspCNI	CTCAG	6 cut(s)	523, 873, 907, 931, 1018, 1174
BspLI	GGNNCC	1 cut(s)	792
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	4 cut(s)	270, 927, 1120, 1215
BspQI	GCTCTTC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	790
BspTI	CTTAAG	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	786
BsrGI	TGTACA	2 cut(s)	157, 310
BsrI	ACTGG	2 cut(s)	429, 792
BssECI	CCNNGG	2 cut(s)	549, 1129
BssMI	GATC	4 cut(s)	262, 919, 1125, 1207
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	361, 595
Bst6I	CTCTTC	2 cut(s)	297, 654
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstAUI	TGTACA	2 cut(s)	157, 310
BstC8I	GCNNGC	3 cut(s)	965, 1041, 1045
BstDEI	CTNAG	8 cut(s)	510, 573, 881, 915, 939, 944, 1026, 1182
BstF5I	GGATG	3 cut(s)	160, 491, 618
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	4 cut(s)	265, 922, 1128, 1210
BstMAI	GTCTC	2 cut(s)	513, 1161
BstMBI	GATC	4 cut(s)	262, 919, 1125, 1207
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 21, 797, 1116
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	2 cut(s)	106, 311
BstPAI	GACNNNNGTC	1 cut(s)	1149
BstSCI	CCNGG	2 cut(s)	582, 1129
BstSFI	CTRYAG	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	719
BstV1I	GCAGC	2 cut(s)	24, 33
BstV2I	GAAGAC	2 cut(s)	198, 978
BstX2I	RGATCY	3 cut(s)	919, 1125, 1207
BstXI	CCANNNNNNTGG	1 cut(s)	1220
BstYI	RGATCY	3 cut(s)	919, 1125, 1207
BtsCI	GGATG	3 cut(s)	160, 491, 618
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	3 cut(s)	965, 1041, 1045
CfoI	GCGC	1 cut(s)	1039
Cfr13I	GGNCC	1 cut(s)	1133
CseI	GACGC	1 cut(s)	974
Csp6I	GTAC	4 cut(s)	158, 311, 785, 878
CviAII	CATG	4 cut(s)	103, 308, 496, 842
CviQI	GTAC	4 cut(s)	158, 311, 785, 878
DdeI	CTNAG	8 cut(s)	510, 573, 881, 915, 939, 944, 1026, 1182
DpnI	GATC	4 cut(s)	264, 921, 1127, 1209
DpnII	GATC	4 cut(s)	262, 919, 1125, 1207
Eam1104I	CTCTTC	2 cut(s)	297, 654
EarI	CTCTTC	2 cut(s)	297, 654
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	1133
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	4 cut(s)	242, 404, 551, 1160
EcoICRI	GAGCTC	1 cut(s)	55
EcoRI	GAATTC	3 cut(s)	179, 451, 674
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	4 cut(s)	106, 311, 499, 845
FaqI	GGGAC	3 cut(s)	82, 293, 745
FatI	CATG	4 cut(s)	102, 307, 495, 841
FauI	CCCGC	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	13, 22
FokI	GGATG	3 cut(s)	167, 478, 625
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	13, 22
FspBI	CTAG	3 cut(s)	476, 609, 704
GlaI	GCGC	1 cut(s)	1038
GluI	GCNGC	2 cut(s)	13, 22
HapII	CCGG	1 cut(s)	1131
HgaI	GACGC	1 cut(s)	974
HhaI	GCGC	1 cut(s)	1039
Hin1II	CATG	4 cut(s)	106, 311, 499, 845
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	127, 533
HinfI	GANTC	7 cut(s)	113, 482, 506, 526, 686, 758, 862
HpaII	CCGG	1 cut(s)	1131
HphI	GGTGA	2 cut(s)	367, 1090
Hpy166II	GTNNAC	3 cut(s)	292, 364, 717
Hpy188I	TCNGA	5 cut(s)	178, 400, 531, 685, 1179
Hpy188III	TCNNGA	8 cut(s)	145, 229, 242, 260, 299, 599, 929, 1061
Hpy8I	GTNNAC	3 cut(s)	292, 364, 717
Hpy99I	CGWCG	1 cut(s)	990
HpyAV	CCTTC	4 cut(s)	266, 814, 892, 1075
HpyCH4III	ACNGT	2 cut(s)	361, 595
HpyCH4V	TGCA	8 cut(s)	61, 78, 275, 418, 465, 717, 1015, 1119
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 21, 797, 1116
HpyF3I	CTNAG	8 cut(s)	510, 573, 881, 915, 939, 944, 1026, 1182
Hsp92II	CATG	4 cut(s)	106, 311, 499, 845
HspAI	GCGC	1 cut(s)	1037
Kzo9I	GATC	4 cut(s)	262, 919, 1125, 1207
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	52, 60, 553
Lsp1109I	GCAGC	2 cut(s)	24, 33
LweI	GCATC	3 cut(s)	65, 787, 1016
MaeI	CTAG	3 cut(s)	476, 609, 704
MaeIII	GTNAC	4 cut(s)	29, 355, 444, 828
MalI	GATC	4 cut(s)	264, 921, 1127, 1209
MboI	GATC	4 cut(s)	262, 919, 1125, 1207
MboII	GAAGA	9 cut(s)	203, 314, 397, 599, 671, 826, 899, 920, 983
MflI	RGATCY	3 cut(s)	919, 1125, 1207
MhlI	GDGCHC	3 cut(s)	57, 719, 740
MlyI	GAGTC	5 cut(s)	491, 515, 535, 695, 767
MnlI	CCTC	7 cut(s)	43, 472, 633, 655, 700, 910, 1198
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	7 cut(s)	87, 269, 326, 371, 413, 623, 695
MslI	CAYNNNNRTG	2 cut(s)	287, 846
MspA1I	CMGCKG	1 cut(s)	15
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	1131
MspR9I	CCNGG	2 cut(s)	584, 1131
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	4 cut(s)	18, 21, 797, 1116
NciI	CCSGG	1 cut(s)	1131
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	4 cut(s)	262, 919, 1125, 1207
NlaIII	CATG	4 cut(s)	106, 311, 499, 845
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	3 cut(s)	29, 355, 828
NspI	RCATGY	2 cut(s)	106, 311
OliI	CACNNNNGTG	1 cut(s)	287
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	594
PfeI	GAWTC	2 cut(s)	113, 862
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	2 cut(s)	14, 23
PleI	GAGTC	5 cut(s)	490, 514, 534, 694, 766
PpsI	GAGTC	5 cut(s)	490, 514, 534, 694, 766
PscI	ACATGT	1 cut(s)	102
PshAI	GACNNNNGTC	1 cut(s)	1149
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	1 cut(s)	1133
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	3 cut(s)	919, 1125, 1207
RsaI	GTAC	4 cut(s)	159, 312, 786, 879
RsaNI	GTAC	4 cut(s)	158, 311, 785, 878
RseI	CAYNNNNRTG	2 cut(s)	287, 846
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	7 cut(s)	87, 269, 326, 371, 413, 623, 695
SatI	GCNGC	2 cut(s)	13, 22
Sau3AI	GATC	4 cut(s)	262, 919, 1125, 1207
Sau96I	GGNCC	1 cut(s)	1133
ScaI	AGTACT	1 cut(s)	879
SchI	GAGTC	5 cut(s)	491, 515, 535, 695, 767
ScrFI	CCNGG	2 cut(s)	584, 1131
SduI	GDGCHC	3 cut(s)	57, 719, 740
SfaNI	GCATC	3 cut(s)	65, 787, 1016
SfcI	CTRYAG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	1133
SmiMI	CAYNNNNRTG	2 cut(s)	287, 846
SmlI	CTYRAG	6 cut(s)	86, 227, 240, 320, 635, 927
SmoI	CTYRAG	6 cut(s)	86, 227, 240, 320, 635, 927
SsiI	CCGC	2 cut(s)	15, 184
SspMI	CTAG	3 cut(s)	476, 609, 704
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	582, 1129
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	2 cut(s)	361, 595
TaqI	TCGA	4 cut(s)	5, 42, 598, 1203
TatI	WGTACW	3 cut(s)	157, 310, 877
TfiI	GAWTC	2 cut(s)	113, 862
Tru1I	TTAA	7 cut(s)	87, 269, 326, 371, 413, 623, 695
Tru9I	TTAA	7 cut(s)	87, 269, 326, 371, 413, 623, 695
TscAI	CASTG	1 cut(s)	518
TseFI	GTSAC	3 cut(s)	29, 355, 828
TseI	GCWGC	2 cut(s)	12, 21
Tsp45I	GTSAC	3 cut(s)	29, 355, 828
TspDTI	ATGAA	7 cut(s)	179, 480, 629, 833, 858, 864, 1202
TspRI	CASTG	1 cut(s)	518
Vha464I	CTTAAG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	1133
XapI	RAATTY	7 cut(s)	179, 204, 210, 346, 451, 457, 674
XceI	RCATGY	2 cut(s)	106, 311
XcmI	CCANNNNNNNNNTGG	1 cut(s)	778
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	3 cut(s)	476, 609, 704
ZrmI	AGTACT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.