Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Reverse (-)

3960509 .. 3963606

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTCTAACAGCAGCGGGGGCAGCAATAGTGACAGCTCGTTCGATATTGAGGAGCTCCTGCAGATTGGGACAAGATGCAGAGAGCTTAAGAAAGAAAAGGACATGTTGAAAGAATCACAATCCCAAAGCTTCGGGCTAATCAGGAGTTTGGATGTACATATGAAGTCGTTATCCGAATTCCGCACAGAAGACAAGAAACAAATTCAAATGTTAGAGAAAGAACTCAAGAACTGCTCTCAAGAAATAGATTACCTTCAGGATCAATTAAATGCAAGGGACACAGAAGTGACCTTTCTTGAAGAGCATGTACATAGCCTTGAGTTGAAATTAGCAGGCACAGAGAATTTACAGGTGACAGTTGACAGGTTAAGAGATGAGCTGAAGAAGTCCTATTCAGAGTGCTTGTTCTTAATGCAAGAACTGGAAAGCAAAGAAGTGGAGTTACAGAATTCAAATTTGTGCATAGAGAAACTAGAGGAGTCAGTTTCATCCATGTCATTAGAGTCTCAGTGTGAAATTGAGAGTATGAAGCTTGATATGTTAGCGTTGGAGCAGAGTTGCCTTGAAGCTAATAAAGTCCAGGAAGAAACTGTTCGAGAAAAAACTAGGATGAATGAGTTAATTCAAGAACTTGAGGTTCAATGTCAGGATGCACGGAAAACTGCTGATTGCTTAGATATGGAAAATAAGGAACTAAGGGAGAAGCTTGATGCCTCAGAGACAAATACTAGGATCTTTTGTCAGAGGGTTGAAAAATTGCTGGAAGAGGATAGATTTGAATTCAAGTCAGAGTCTTTGTTAAGTGAGCTAGAGGGAAGGCACACATATTCAATAGATATGAGCACTTGTGGAGAAGTCTTGGAGTCACTTTTTTCCAAATTGGCAATGGTACTGGCACCAGATGCCGATATGATAGTGAAGATGAAGGAGATGTCACACCAGATACATGAATATGAACTTCTTGTGAAGCAACTAAAGGAAGAACTGAGAGAAGAAAAGTTAAAGGCAAAAGAAGAAGCTGAGGATCTGGCTCAAGAAATGGCTGAGCTCAGATACCAACTTACAGTCTTGCTTGAAGACGAGTGTAAGCGTCGTGCTTACATTGAACAAGCATCTCTGCAAAGAATTGCTGAGTTAGAAGCGCAGTTGGCTTTCATTCAACCTGGCATCTCTTTCGGCTATGAGTGCAGACAAATCCCGGGCCGAAAAACTGACACTAATGACACAGGTCAGTCTCCCAATGGAACACAACTTGAGACTGAGGTGAAACCTATTTTTGTCGAGGATCTCCAACAGGGTGCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

50.33

Weight (kDa)

4.64

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	895
AciI	CCGC	2 cut(s)	15, 181
AclWI	GGATC	4 cut(s)	267, 740, 1032, 1293
AcsI	RAATTY	6 cut(s)	176, 201, 343, 448, 454, 779
AcuI	CTGAAG	2 cut(s)	239, 401
AfaI	GTAC	3 cut(s)	156, 309, 891
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	102
AjnI	CCWGG	2 cut(s)	579, 1162
AleI	CACNNNNGTG	1 cut(s)	284
Alw21I	GWGCWC	3 cut(s)	57, 845, 1050
Alw26I	GTCTC	4 cut(s)	510, 713, 1239, 1250
AlwI	GGATC	4 cut(s)	267, 740, 1032, 1293
Ama87I	CYCGRG	1 cut(s)	1198
AoxI	GGCC	1 cut(s)	1201
ApeKI	GCWGC	2 cut(s)	12, 21
ApoI	RAATTY	6 cut(s)	176, 201, 343, 448, 454, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	1144
AspS9I	GGNCC	1 cut(s)	1201
AsuC2I	CCSGG	2 cut(s)	1199, 1200
AsuHPI	GGTGA	2 cut(s)	364, 1276
AvaI	CYCGRG	1 cut(s)	1198
BanI	GGYRCC	1 cut(s)	895
BanII	GRGCYC	2 cut(s)	57, 1050
BarI	GAAGNNNNNNTAC	4 cut(s)	291, 323, 426, 458
BbsI	GAAGAC	2 cut(s)	195, 1083
Bbv12I	GWGCWC	3 cut(s)	57, 845, 1050
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	2 cut(s)	24, 33
BcgI	CGANNNNNNTGC	2 cut(s)	1156, 1190
BciT130I	CCWGG	2 cut(s)	581, 1164
BcnI	CCSGG	2 cut(s)	1199, 1200
BcoDI	GTCTC	4 cut(s)	510, 713, 1239, 1250
BfaI	CTAG	4 cut(s)	473, 606, 729, 809
BfmI	CTRYAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	13, 22
BlpI	GCTNAGC	1 cut(s)	1044
BlsI	GCNGC	2 cut(s)	14, 23
Bme1390I	CCNGG	4 cut(s)	581, 1164, 1199, 1200
BmeT110I	CYCGRG	1 cut(s)	1198
BmgT120I	GGNCC	1 cut(s)	1201
BmiI	GGNNCC	1 cut(s)	897
BmrFI	CCNGG	4 cut(s)	581, 1164, 1199, 1200
BmsI	GCATC	6 cut(s)	65, 640, 700, 892, 1121, 1176
BoxI	GACNNNNGTC	1 cut(s)	1227
BpiI	GAAGAC	2 cut(s)	195, 1083
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu1102I	GCTNAGC	1 cut(s)	1044
BpuEI	CTTGAG	6 cut(s)	209, 222, 338, 653, 1017, 1274
BpuMI	CCSGG	2 cut(s)	1199, 1200
BsaJI	CCNNGG	1 cut(s)	1198
Bse1I	ACTGG	2 cut(s)	426, 897
Bse3DI	GCAATG	1 cut(s)	891
BseBI	CCWGG	2 cut(s)	581, 1164
BseDI	CCNNGG	1 cut(s)	1198
BseGI	GGATG	4 cut(s)	157, 488, 615, 655
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	8 cut(s)	521, 729, 977, 1011, 1035, 1063, 1122, 1251
BseNI	ACTGG	2 cut(s)	426, 897
BseRI	GAGGAG	2 cut(s)	65, 491
BseXI	GCAGC	2 cut(s)	24, 33
BsgI	GTGCAG	1 cut(s)	1207
BshFI	GGCC	1 cut(s)	1203
BshNI	GGYRCC	1 cut(s)	895
BsiHKAI	GWGCWC	3 cut(s)	57, 845, 1050
BsiHKCI	CYCGRG	1 cut(s)	1198
BsiSI	CCGG	1 cut(s)	1199
BslFI	GGGAC	2 cut(s)	82, 290
BsmAI	GTCTC	4 cut(s)	510, 713, 1239, 1250
BsmFI	GGGAC	2 cut(s)	82, 290
BsnI	GGCC	1 cut(s)	1203
BsoBI	CYCGRG	1 cut(s)	1198
Bsp1286I	GDGCHC	3 cut(s)	57, 845, 1050
Bsp1407I	TGTACA	2 cut(s)	154, 307
Bsp143I	GATC	4 cut(s)	259, 732, 1024, 1285
Bsp1720I	GCTNAGC	1 cut(s)	1044
BspACI	CCGC	2 cut(s)	15, 181
BspANI	GGCC	1 cut(s)	1203
BspCNI	CTCAG	8 cut(s)	520, 728, 978, 1012, 1036, 1062, 1123, 1252
BspLI	GGNNCC	1 cut(s)	897
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	4 cut(s)	267, 740, 1032, 1293
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	895
BspTI	CTTAAG	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	891
BsrGI	TGTACA	2 cut(s)	154, 307
BsrI	ACTGG	2 cut(s)	426, 897
BssECI	CCNNGG	1 cut(s)	1198
BssMI	GATC	4 cut(s)	259, 732, 1024, 1285
Bst2UI	CCWGG	2 cut(s)	581, 1164
Bst4CI	ACNGT	3 cut(s)	358, 592, 1066
Bst6I	CTCTTC	2 cut(s)	294, 759
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstAUI	TGTACA	2 cut(s)	154, 307
BstC8I	GCNNGC	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	157, 488, 615, 655
BstHHI	GCGC	1 cut(s)	1144
BstKTI	GATC	4 cut(s)	262, 735, 1027, 1288
BstMAI	GTCTC	4 cut(s)	510, 713, 1239, 1250
BstMBI	GATC	4 cut(s)	259, 732, 1024, 1285
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 21, 902, 1148, 1185
BstNI	CCWGG	2 cut(s)	581, 1164
BstNSI	RCATGY	2 cut(s)	106, 308
BstPAI	GACNNNNGTC	1 cut(s)	1227
BstSCI	CCNGG	4 cut(s)	579, 1162, 1197, 1198
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	24, 33
BstV2I	GAAGAC	2 cut(s)	195, 1083
BstX2I	RGATCY	3 cut(s)	732, 1024, 1285
BstYI	RGATCY	3 cut(s)	732, 1024, 1285
BsuRI	GGCC	1 cut(s)	1203
BtsCI	GGATG	4 cut(s)	157, 488, 615, 655
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	1144
Cfr13I	GGNCC	1 cut(s)	1201
Cfr9I	CCCGGG	1 cut(s)	1198
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	3 cut(s)	155, 308, 890
CviAII	CATG	5 cut(s)	103, 305, 493, 947, 1302
CviQI	GTAC	3 cut(s)	155, 308, 890
DpnI	GATC	4 cut(s)	261, 734, 1026, 1287
DpnII	GATC	4 cut(s)	259, 732, 1024, 1285
Eam1104I	CTCTTC	2 cut(s)	294, 759
EarI	CTCTTC	2 cut(s)	294, 759
Ecl136II	GAGCTC	2 cut(s)	55, 1048
Eco24I	GRGCYC	2 cut(s)	57, 1050
Eco53kI	GAGCTC	2 cut(s)	55, 1048
Eco57I	CTGAAG	2 cut(s)	239, 401
Eco88I	CYCGRG	1 cut(s)	1198
EcoICRI	GAGCTC	2 cut(s)	55, 1048
EcoRI	GAATTC	3 cut(s)	176, 448, 779
EcoRII	CCWGG	2 cut(s)	579, 1162
EcoT38I	GRGCYC	2 cut(s)	57, 1050
FaeI	CATG	5 cut(s)	106, 308, 496, 950, 1305
FaqI	GGGAC	2 cut(s)	82, 290
FatI	CATG	5 cut(s)	102, 304, 492, 946, 1301
FauI	CCCGC	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	13, 22
FokI	GGATG	4 cut(s)	164, 475, 622, 662
FriOI	GRGCYC	2 cut(s)	57, 1050
Fsp4HI	GCNGC	2 cut(s)	13, 22
FspBI	CTAG	4 cut(s)	473, 606, 729, 809
GlaI	GCGC	1 cut(s)	1143
GluI	GCNGC	2 cut(s)	13, 22
HaeIII	GGCC	1 cut(s)	1203
HapII	CCGG	1 cut(s)	1199
HgaI	GACGC	1 cut(s)	1079
HhaI	GCGC	1 cut(s)	1144
Hin1II	CATG	5 cut(s)	106, 308, 496, 950, 1305
Hin6I	GCGC	1 cut(s)	1142
HinP1I	GCGC	1 cut(s)	1142
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	3 cut(s)	127, 530, 704
HinfI	GANTC	5 cut(s)	113, 479, 503, 791, 863
HpaII	CCGG	1 cut(s)	1199
HphI	GGTGA	2 cut(s)	364, 1276
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	6 cut(s)	175, 397, 718, 744, 790, 1052
Hpy188III	TCNNGA	9 cut(s)	142, 226, 239, 257, 296, 596, 626, 647, 1034
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	1095
HpyAV	CCTTC	3 cut(s)	263, 810, 919
HpyCH4III	ACNGT	3 cut(s)	358, 592, 1066
HpyCH4V	TGCA	9 cut(s)	61, 78, 272, 415, 462, 653, 1120, 1188, 1301
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 21, 902, 1148, 1185
Hsp92II	CATG	5 cut(s)	106, 308, 496, 950, 1305
HspAI	GCGC	1 cut(s)	1142
Kzo9I	GATC	4 cut(s)	259, 732, 1024, 1285
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	3 cut(s)	52, 60, 550
Lsp1109I	GCAGC	2 cut(s)	24, 33
LweI	GCATC	6 cut(s)	65, 640, 700, 892, 1121, 1176
MaeI	CTAG	4 cut(s)	473, 606, 729, 809
MaeIII	GTNAC	6 cut(s)	29, 286, 352, 441, 864, 933
MalI	GATC	4 cut(s)	261, 734, 1026, 1287
MboI	GATC	4 cut(s)	259, 732, 1024, 1285
MflI	RGATCY	3 cut(s)	732, 1024, 1285
MhlI	GDGCHC	3 cut(s)	57, 845, 1050
MlyI	GAGTC	4 cut(s)	488, 512, 800, 872
MmeI	TCCRAC	1 cut(s)	528
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
MslI	CAYNNNNRTG	2 cut(s)	284, 951
MspA1I	CMGCKG	1 cut(s)	15
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	1199
MspR9I	CCNGG	4 cut(s)	581, 1164, 1199, 1200
MvaI	CCWGG	2 cut(s)	581, 1164
MwoI	GCNNNNNNNGC	5 cut(s)	18, 21, 902, 1148, 1185
NciI	CCSGG	2 cut(s)	1199, 1200
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	4 cut(s)	259, 732, 1024, 1285
NlaIII	CATG	5 cut(s)	106, 308, 496, 950, 1305
NlaIV	GGNNCC	1 cut(s)	897
NmuCI	GTSAC	5 cut(s)	29, 286, 352, 864, 933
NspI	RCATGY	2 cut(s)	106, 308
OliI	CACNNNNGTG	1 cut(s)	284
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	14, 23
PleI	GAGTC	4 cut(s)	487, 511, 799, 871
PpsI	GAGTC	4 cut(s)	487, 511, 799, 871
PscI	ACATGT	1 cut(s)	102
PshAI	GACNNNNGTC	1 cut(s)	1227
Psp124BI	GAGCTC	2 cut(s)	57, 1050
Psp6I	CCWGG	2 cut(s)	579, 1162
PspGI	CCWGG	2 cut(s)	579, 1162
PspN4I	GGNNCC	1 cut(s)	897
PspPI	GGNCC	1 cut(s)	1201
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	3 cut(s)	732, 1024, 1285
RsaI	GTAC	3 cut(s)	156, 309, 891
RsaNI	GTAC	3 cut(s)	155, 308, 890
RseI	CAYNNNNRTG	2 cut(s)	284, 951
SacI	GAGCTC	2 cut(s)	57, 1050
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
SatI	GCNGC	2 cut(s)	13, 22
Sau3AI	GATC	4 cut(s)	259, 732, 1024, 1285
Sau96I	GGNCC	1 cut(s)	1201
SchI	GAGTC	4 cut(s)	488, 512, 800, 872
ScrFI	CCNGG	4 cut(s)	581, 1164, 1199, 1200
SduI	GDGCHC	3 cut(s)	57, 845, 1050
SfaNI	GCATC	6 cut(s)	65, 640, 700, 892, 1121, 1176
SfcI	CTRYAG	1 cut(s)	59
SmaI	CCCGGG	1 cut(s)	1200
SmiMI	CAYNNNNRTG	2 cut(s)	284, 951
SmlI	CTYRAG	7 cut(s)	86, 224, 237, 317, 632, 1032, 1253
SmoI	CTYRAG	7 cut(s)	86, 224, 237, 317, 632, 1032, 1253
SsiI	CCGC	2 cut(s)	15, 181
SspMI	CTAG	4 cut(s)	473, 606, 729, 809
SstI	GAGCTC	2 cut(s)	57, 1050
StyD4I	CCNGG	4 cut(s)	579, 1162, 1197, 1198
TaaI	ACNGT	3 cut(s)	358, 592, 1066
TaqI	TCGA	3 cut(s)	42, 595, 1281
TatI	WGTACW	2 cut(s)	154, 307
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
Tru9I	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	5 cut(s)	29, 286, 352, 864, 933
TseI	GCWGC	2 cut(s)	12, 21
Tsp45I	GTSAC	5 cut(s)	29, 286, 352, 864, 933
TspDTI	ATGAA	8 cut(s)	176, 477, 542, 626, 938, 963, 969, 1144
TspGWI	ACGGA	1 cut(s)	670
TspMI	CCCGGG	1 cut(s)	1198
TspRI	CASTG	1 cut(s)	515
Vha464I	CTTAAG	1 cut(s)	86
XapI	RAATTY	6 cut(s)	176, 201, 343, 448, 454, 779
XceI	RCATGY	2 cut(s)	106, 308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmaI	CCCGGG	1 cut(s)	1198
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	4 cut(s)	473, 606, 729, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.