Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013953.1

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Reverse (-)

462 .. 3648

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013953.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

atggataatacagctatatatccacttgtcgacccgacccgaccagaacgttttgcgttttgccagctgagcgcccaactcaaaacaactcgacgagggacccactcccaaagcaaaattgaagctttcatagtttcatcattggttcttcaaaaattcgaattctttccaatcaaatttcccaaacccaagcttggactcacttgcagagaaccccaaaaccctaaacccagatcgcagtctcggaaatcattgatgtcgaacagcagcgggggcagcaatagtgacagttcgttcgatattgaggagctcctgcagattgggacaagatgcagagagcttaagaaagaaaaggacatgttgaaagaatcacaatcccaaagcttcgggctaatcaggagtttggatgtacatatgaagtcattatccgaattccgcacggaagacaagaaacaaattcaaatgttagagaaagaactcaagaactgctctcaagaaatagattaccttcaggatcaattaaatgcaagggacacagaagtgacctttcttgaagagcatgtacatagccttgagttgaaattagcaggcacagagaatttacaggtgacagttgacaggttaagagatgagctgaagaagtcctattcagagtgcttgttcttaatgcaagaactggaaagcaaagaagtgcagttacagaattcaaatttgtgcatagagaaactagaggagtcagtttcatccatgtcattagagtctcagtgtgaaattgagagtatgaagcttgatatgttagcgttggagcagagttgccttgaagctaagaaagtccaggaagaaactgttcgagaaaaaactaggatgaatgagttaattcaagaacttgaggttcaatgtcaggatgcacggaaaactgctgattgcgtagatatggaaaataaggaactaagggagaagcttgatgcctcagagacaaatactaggatcttttgtcagagggttgaaaaattgctggaagaggatagatttgaattcaagtcagagtctttgttaagtgagctagagggaaggcacacatattcaatagatatgagcacttgtggagaagtcttggagtcacttttttccaaattggcaatggtactggcaccagatgccgatatgatagtgaagatgaaggagatgtcacaccagatacatgaatatgaacttcttgtgaagcaactaaaggaagaactgagagaagaaaagttaaaggcaaaagaagaagctgaggatctggctcaagaaatggctgagctcagataccaacttacaggcttgcttgaagacgagtgtaagcgtcgtgcttacattgaacaagcatctctgcaaagaattgctgagttagaagcgcaggttcaaaaagcacagacaaaatcctttgctggtctcctcagtctcgatgaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

485

Amino Acids

56.1

Weight (kDa)

5.0

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1390
AccB1I	GGYRCC	1 cut(s)	1150
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	2 cut(s)	270, 436
AclI	AACGTT	1 cut(s)	49
AclWI	GGATC	3 cut(s)	522, 995, 1287
AcsI	RAATTY	9 cut(s)	155, 161, 176, 431, 456, 598, 703, 709, 1034
AcuI	CTGAAG	2 cut(s)	494, 656
AfaI	GTAC	3 cut(s)	411, 564, 1146
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	834
AleI	CACNNNNGTG	1 cut(s)	539
Alw21I	GWGCWC	3 cut(s)	312, 1100, 1305
Alw26I	GTCTC	5 cut(s)	246, 765, 968, 1439, 1448
AlwI	GGATC	3 cut(s)	522, 995, 1287
ApeKI	GCWGC	2 cut(s)	267, 276
ApoI	RAATTY	9 cut(s)	155, 161, 176, 431, 456, 598, 703, 709, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp700I	GAANNNNTTC	2 cut(s)	165, 846
AspLEI	GCGC	2 cut(s)	74, 1399
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	619
AsuII	TTCGAA	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	1150
BanII	GRGCYC	2 cut(s)	312, 1305
BarI	GAAGNNNNNNTAC	4 cut(s)	546, 578, 681, 713
BbsI	GAAGAC	2 cut(s)	450, 1338
Bbv12I	GWGCWC	3 cut(s)	312, 1100, 1305
BbvCI	CCTCAGC	1 cut(s)	1275
BbvI	GCAGC	2 cut(s)	279, 288
BciT130I	CCWGG	1 cut(s)	836
BcoDI	GTCTC	5 cut(s)	246, 765, 968, 1439, 1448
BfaI	CTAG	4 cut(s)	728, 861, 984, 1064
BfmI	CTRYAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	1390
BisI	GCNGC	2 cut(s)	268, 277
BlpI	GCTNAGC	2 cut(s)	68, 1299
BlsI	GCNGC	2 cut(s)	269, 278
Bme1390I	CCNGG	1 cut(s)	836
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	100, 101, 1152
BmrFI	CCNGG	1 cut(s)	836
BmsI	GCATC	5 cut(s)	320, 895, 955, 1147, 1376
BpiI	GAAGAC	2 cut(s)	450, 1338
Bpu10I	CCTNAGC	1 cut(s)	1275
Bpu1102I	GCTNAGC	2 cut(s)	68, 1299
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	5 cut(s)	464, 477, 593, 908, 1272
BsaI	GGTCTC	1 cut(s)	1439
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	681, 1152
Bse3DI	GCAATG	1 cut(s)	1146
BseBI	CCWGG	1 cut(s)	836
BseGI	GGATG	4 cut(s)	412, 743, 870, 910
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	1 cut(s)	1146
BseMII	CTCAG	9 cut(s)	59, 776, 984, 1232, 1266, 1290, 1318, 1377, 1453
BseNI	ACTGG	2 cut(s)	681, 1152
BseRI	GAGGAG	3 cut(s)	320, 746, 1427
BseXI	GCAGC	2 cut(s)	279, 288
BsgI	GTGCAG	1 cut(s)	713
BshNI	GGYRCC	1 cut(s)	1150
BsiHKAI	GWGCWC	3 cut(s)	312, 1100, 1305
BslFI	GGGAC	3 cut(s)	112, 337, 545
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	5 cut(s)	246, 765, 968, 1439, 1448
BsmFI	GGGAC	3 cut(s)	112, 337, 545
Bso31I	GGTCTC	1 cut(s)	1439
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	3 cut(s)	312, 1100, 1305
Bsp1407I	TGTACA	2 cut(s)	409, 562
Bsp143I	GATC	4 cut(s)	233, 514, 987, 1279
Bsp1720I	GCTNAGC	2 cut(s)	68, 1299
BspACI	CCGC	2 cut(s)	270, 436
BspCNI	CTCAG	9 cut(s)	60, 775, 983, 1233, 1267, 1291, 1317, 1378, 1452
BspLI	GGNNCC	3 cut(s)	100, 101, 1152
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	1390
BspPI	GGATC	3 cut(s)	522, 995, 1287
BspQI	GCTCTTC	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	1150
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	1439
BsrDI	GCAATG	1 cut(s)	1146
BsrGI	TGTACA	2 cut(s)	409, 562
BsrI	ACTGG	2 cut(s)	681, 1152
BssMI	GATC	4 cut(s)	233, 514, 987, 1279
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	3 cut(s)	290, 613, 847
Bst6I	CTCTTC	2 cut(s)	549, 1014
BstAFI	CTTAAG	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	1157
BstAUI	TGTACA	2 cut(s)	409, 562
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	65, 589, 1325
BstF5I	GGATG	4 cut(s)	412, 743, 870, 910
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 1399
BstKTI	GATC	4 cut(s)	236, 517, 990, 1282
BstMAI	GTCTC	5 cut(s)	246, 765, 968, 1439, 1448
BstMBI	GATC	4 cut(s)	233, 514, 987, 1279
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 273, 276, 1157
BstNI	CCWGG	1 cut(s)	836
BstNSI	RCATGY	2 cut(s)	361, 563
BstSCI	CCNGG	1 cut(s)	834
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	279, 288
BstV2I	GAAGAC	2 cut(s)	450, 1338
BstX2I	RGATCY	2 cut(s)	987, 1279
BstYI	RGATCY	2 cut(s)	987, 1279
BtsCI	GGATG	4 cut(s)	412, 743, 870, 910
BtsIMutI	CAGTG	1 cut(s)	770
BveI	ACCTGC	1 cut(s)	1390
Cac8I	GCNNGC	3 cut(s)	65, 589, 1325
CfoI	GCGC	2 cut(s)	74, 1399
Cfr13I	GGNCC	1 cut(s)	99
CseI	GACGC	1 cut(s)	1334
Csp6I	GTAC	3 cut(s)	410, 563, 1145
CviAII	CATG	4 cut(s)	358, 560, 748, 1202
CviQI	GTAC	3 cut(s)	410, 563, 1145
DpnI	GATC	4 cut(s)	235, 516, 989, 1281
DpnII	GATC	4 cut(s)	233, 514, 987, 1279
Eam1104I	CTCTTC	2 cut(s)	549, 1014
EarI	CTCTTC	2 cut(s)	549, 1014
Ecl136II	GAGCTC	2 cut(s)	310, 1303
Eco24I	GRGCYC	2 cut(s)	312, 1305
Eco31I	GGTCTC	1 cut(s)	1439
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	2 cut(s)	310, 1303
Eco57I	CTGAAG	2 cut(s)	494, 656
EcoICRI	GAGCTC	2 cut(s)	310, 1303
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRI	GAATTC	4 cut(s)	161, 431, 703, 1034
EcoRII	CCWGG	1 cut(s)	834
EcoT38I	GRGCYC	2 cut(s)	312, 1305
FaeI	CATG	4 cut(s)	361, 563, 751, 1205
FaqI	GGGAC	3 cut(s)	112, 337, 545
FatI	CATG	4 cut(s)	357, 559, 747, 1201
FauI	CCCGC	1 cut(s)	263
FauNDI	CATATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	268, 277
FokI	GGATG	4 cut(s)	419, 730, 877, 917
FriOI	GRGCYC	2 cut(s)	312, 1305
Fsp4HI	GCNGC	2 cut(s)	268, 277
FspBI	CTAG	4 cut(s)	728, 861, 984, 1064
GlaI	GCGC	2 cut(s)	73, 1398
GluI	GCNGC	2 cut(s)	268, 277
HaeII	RGCGCY	1 cut(s)	75
HgaI	GACGC	1 cut(s)	1334
HhaI	GCGC	2 cut(s)	74, 1399
Hin1II	CATG	4 cut(s)	361, 563, 751, 1205
Hin6I	GCGC	2 cut(s)	72, 1397
HinP1I	GCGC	2 cut(s)	72, 1397
HincII	GTYRAC	2 cut(s)	31, 616
HindII	GTYRAC	2 cut(s)	31, 616
HindIII	AAGCTT	5 cut(s)	123, 191, 382, 785, 959
HinfI	GANTC	6 cut(s)	198, 368, 734, 758, 1046, 1118
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	2 cut(s)	31, 616
Hpy188I	TCNGA	7 cut(s)	246, 430, 652, 973, 999, 1045, 1307
Hpy8I	GTNNAC	2 cut(s)	31, 616
Hpy99I	CGWCG	2 cut(s)	96, 1350
HpyAV	CCTTC	3 cut(s)	518, 1065, 1174
HpyCH4III	ACNGT	3 cut(s)	290, 613, 847
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	9 cut(s)	207, 316, 333, 527, 670, 694, 717, 908, 1375
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 273, 276, 1157
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	361, 563, 751, 1205
HspAI	GCGC	2 cut(s)	72, 1397
KflI	GGGWCCC	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	233, 514, 987, 1279
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	3 cut(s)	307, 315, 805
Lsp1109I	GCAGC	2 cut(s)	279, 288
LweI	GCATC	5 cut(s)	320, 895, 955, 1147, 1376
MaeI	CTAG	4 cut(s)	728, 861, 984, 1064
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	6 cut(s)	284, 541, 607, 696, 1119, 1188
MalI	GATC	4 cut(s)	235, 516, 989, 1281
MboI	GATC	4 cut(s)	233, 514, 987, 1279
MflI	RGATCY	2 cut(s)	987, 1279
MhlI	GDGCHC	3 cut(s)	312, 1100, 1305
MlyI	GAGTC	5 cut(s)	192, 743, 767, 1055, 1127
MmeI	TCCRAC	1 cut(s)	783
MroXI	GAANNNNTTC	2 cut(s)	165, 846
MseI	TTAA	7 cut(s)	342, 521, 623, 665, 875, 1055, 1256
MslI	CAYNNNNRTG	2 cut(s)	539, 1206
MspA1I	CMGCKG	2 cut(s)	67, 270
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	836
MvaI	CCWGG	1 cut(s)	836
MwoI	GCNNNNNNNGC	4 cut(s)	69, 273, 276, 1157
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	4 cut(s)	233, 514, 987, 1279
NlaIII	CATG	4 cut(s)	361, 563, 751, 1205
NlaIV	GGNNCC	3 cut(s)	100, 101, 1152
NmuCI	GTSAC	5 cut(s)	284, 541, 607, 1119, 1188
NspI	RCATGY	2 cut(s)	361, 563
NspV	TTCGAA	1 cut(s)	159
OliI	CACNNNNGTG	1 cut(s)	539
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	549
PdmI	GAANNNNTTC	2 cut(s)	165, 846
PfeI	GAWTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	834
PkrI	GCNGC	2 cut(s)	269, 278
PleI	GAGTC	5 cut(s)	192, 742, 766, 1054, 1126
PpsI	GAGTC	5 cut(s)	192, 742, 766, 1054, 1126
PpuMI	RGGWCCY	1 cut(s)	99
PscI	ACATGT	1 cut(s)	357
Psp124BI	GAGCTC	2 cut(s)	312, 1305
Psp1406I	AACGTT	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	834
PspGI	CCWGG	1 cut(s)	834
PspN4I	GGNNCC	3 cut(s)	100, 101, 1152
PspPI	GGNCC	1 cut(s)	99
PspPPI	RGGWCCY	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	987, 1279
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	3 cut(s)	411, 564, 1146
RsaNI	GTAC	3 cut(s)	410, 563, 1145
RseI	CAYNNNNRTG	2 cut(s)	539, 1206
SacI	GAGCTC	2 cut(s)	312, 1305
SalI	GTCGAC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	7 cut(s)	342, 521, 623, 665, 875, 1055, 1256
SatI	GCNGC	2 cut(s)	268, 277
Sau3AI	GATC	4 cut(s)	233, 514, 987, 1279
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	5 cut(s)	192, 743, 767, 1055, 1127
ScrFI	CCNGG	1 cut(s)	836
SduI	GDGCHC	3 cut(s)	312, 1100, 1305
SfaNI	GCATC	5 cut(s)	320, 895, 955, 1147, 1376
SfcI	CTRYAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	159
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	539, 1206
SmlI	CTYRAG	6 cut(s)	341, 479, 492, 572, 887, 1287
SmoI	CTYRAG	6 cut(s)	341, 479, 492, 572, 887, 1287
SsiI	CCGC	2 cut(s)	270, 436
SspMI	CTAG	4 cut(s)	728, 861, 984, 1064
SstI	GAGCTC	2 cut(s)	312, 1305
StyD4I	CCNGG	1 cut(s)	834
TaaI	ACNGT	3 cut(s)	290, 613, 847
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	7 cut(s)	30, 91, 159, 260, 297, 850, 1446
TatI	WGTACW	2 cut(s)	409, 562
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	7 cut(s)	342, 521, 623, 665, 875, 1055, 1256
Tru9I	TTAA	7 cut(s)	342, 521, 623, 665, 875, 1055, 1256
TscAI	CASTG	1 cut(s)	770
TseFI	GTSAC	5 cut(s)	284, 541, 607, 1119, 1188
TseI	GCWGC	2 cut(s)	267, 276
Tsp45I	GTSAC	5 cut(s)	284, 541, 607, 1119, 1188
TspDTI	ATGAA	9 cut(s)	118, 126, 431, 732, 797, 881, 1193, 1218, 1224
TspGWI	ACGGA	2 cut(s)	455, 925
TspRI	CASTG	1 cut(s)	770
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	9 cut(s)	155, 161, 176, 431, 456, 598, 703, 709, 1034
XceI	RCATGY	2 cut(s)	361, 563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1138
XmiI	GTMKAC	1 cut(s)	30
XmnI	GAANNNNTTC	2 cut(s)	165, 846
XspI	CTAG	4 cut(s)	728, 861, 984, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.