Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Reverse (-)

29519643 .. 29523495

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1208800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTCAAGCACAAGCAGCAGCAGTAGCAGCAGCAAGAGGAATAGTGAGAGCTCATTTGATGTTGAGGAACTCCTACAAATTGGGACAAGATGCAGAGAGCTAAAGAAAGAGAAAGACATGTTGAAAGAATCACAATCCCAAAGCTTCGGGCTGATCAGGAGATTAGAAGTGCATGTGAATTCATTATCAGAAGCCTGCACAGAAGACAAGAAACAAATTCAAATGTTAGAGAAAGAACTCAAGAACTGCTCTCAAGAAATAGATTACCTGCAGGATCAACTAAATGTAAGGAACACTGAAGTGAACCTCCTTGAAGAGCATGTACATAGCCTTGAGTTTAAATTAGCCGATATGGAAACTTTACAAAAGATGGTTGACGGTTTAAGGAATGAACTTAAGAAGTCCTATACAGATCGCTTGTACTTAATACAGGAACTAGAAAACAAAGAAATAGAGTTACGGAATTCAAATTTGTGCATGGAGAAACTAGAGGAGTCAGTTTCATCCATGTCATTAGAGTCTCAGTGTGAAATAGAGAGTATGAAGCTTGATATATCGGCCTTGGAGCGTAGCTGCTTTGAAGCTAAGAAAATACAGGAAGAAACTGTTCGAGAAAATACTAGGATGAGTCAGTTAATTCAAGATCTTGAGGTTCAATGTTGGGATGCAAAGAAAACTGCTGAGACTTTCGAAATGGAAAATAAGGAACTTAGGAAGAAGCTTAATACATCGGAGACAAATACTAGGATATTCTGTCAGAGAGTTGAAAAATGGCTGGAAATGGACAGAGATCAACTCGACACCGAGTCCTTGTTGTGTGAACTAGAGAGAAACCTTGAGTTGTCAGAGGAAATGAGCACGTATGGAGAAGTCTTGGGCCCCCTCTTTTCCAAATTGGCAATGGTAGTCACACCAGATGCAGCTTTAATAAAGAAGATGGAGAAGCTGTCACGTCAGATAGAGGAGTACGAAGTTCTTGTGAAGCAACTAAAGGAAGAACTGAAAGTGGAAAAGTTGAAGGCAAAAGAAGAAGCGGAGGATCTAGCTCAAGAAATGGCTGAGCTCAGATACCAAATGACAGGGTTGCTTGAAGAAGAGTGTAAGCGCCGTGCTTGCATCGAGCAAGCATCGTTACAAAGAATTGCTGAGTTAGAAGTACAGATTAAAAAAGAACGGACCAAATCCATTGCTGCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

46.55

Weight (kDa)

4.91

Isoelectric Point (pI)

63.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	276
AciI	CCGC	1 cut(s)	1034
AclWI	GGATC	2 cut(s)	282, 1047
AcsI	RAATTY	4 cut(s)	178, 216, 463, 469
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	4 cut(s)	324, 422, 968, 1158
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	117
AhdI	GACNNNNNGTC	1 cut(s)	805
AjiI	CACGTC	1 cut(s)	953
AleI	CACNNNNGTG	1 cut(s)	299
Alw21I	GWGCWC	3 cut(s)	53, 860, 1065
Alw26I	GTCTC	3 cut(s)	525, 677, 728
AlwI	GGATC	2 cut(s)	282, 1047
AoxI	GGCC	2 cut(s)	558, 877
ApaI	GGGCCC	1 cut(s)	881
ApeKI	GCWGC	7 cut(s)	15, 18, 27, 30, 573, 920, 1190
ApoI	RAATTY	4 cut(s)	178, 216, 463, 469
Asp700I	GAANNNNTTC	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	1107
AspS9I	GGNCC	3 cut(s)	877, 878, 1176
AsuII	TTCGAA	1 cut(s)	690
AvaII	GGWCC	1 cut(s)	1176
BaeGI	GKGCMC	1 cut(s)	881
BanII	GRGCYC	3 cut(s)	53, 881, 1065
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	3 cut(s)	53, 860, 1065
BbvI	GCAGC	7 cut(s)	27, 30, 39, 42, 560, 932, 1177
BccI	CCATC	2 cut(s)	364, 931
BceAI	ACGGC	1 cut(s)	1092
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	525, 677, 728
BfaI	CTAG	6 cut(s)	437, 488, 621, 744, 824, 1043
BfmI	CTRYAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	1108
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	7 cut(s)	16, 19, 28, 31, 574, 921, 1191
BlpI	GCTNAGC	1 cut(s)	1059
BlsI	GCNGC	7 cut(s)	17, 20, 29, 32, 575, 922, 1192
Bme18I	GGWCC	1 cut(s)	1176
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmgBI	CACGTC	1 cut(s)	953
BmgT120I	GGNCC	3 cut(s)	877, 878, 1176
BmiI	GGNNCC	2 cut(s)	879, 880
BmsI	GCATC	5 cut(s)	80, 655, 907, 1125, 1136
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
Bpu1102I	GCTNAGC	1 cut(s)	1059
Bpu14I	TTCGAA	1 cut(s)	690
BpuEI	CTTGAG	6 cut(s)	224, 237, 353, 668, 857, 1032
BsaAI	YACGTR	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	932, 962
Bse3DI	GCAATG	2 cut(s)	906, 1185
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	3 cut(s)	503, 630, 670
BseMI	GCAATG	2 cut(s)	906, 1185
BseMII	CTCAG	5 cut(s)	536, 672, 1050, 1078, 1137
BseRI	GAGGAG	2 cut(s)	506, 977
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	7 cut(s)	27, 30, 39, 42, 560, 932, 1177
BsgI	GTGCAG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	560, 879
BsiHKAI	GWGCWC	3 cut(s)	53, 860, 1065
BslFI	GGGAC	1 cut(s)	97
BsmAI	GTCTC	3 cut(s)	525, 677, 728
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	560, 879
Bsp119I	TTCGAA	1 cut(s)	690
Bsp120I	GGGCCC	1 cut(s)	877
Bsp1286I	GDGCHC	4 cut(s)	53, 860, 881, 1065
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
Bsp1720I	GCTNAGC	1 cut(s)	1059
BspACI	CCGC	1 cut(s)	1034
BspANI	GGCC	2 cut(s)	560, 879
BspCNI	CTCAG	5 cut(s)	535, 673, 1051, 1077, 1138
BspLI	GGNNCC	2 cut(s)	879, 880
BspMAI	CTGCAG	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	282, 1047
BspQI	GCTCTTC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	906, 1185
BsrGI	TGTACA	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
BssT1I	CCWWGG	1 cut(s)	561
Bst4CI	ACNGT	2 cut(s)	380, 607
Bst6I	CTCTTC	2 cut(s)	309, 1089
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	322
BstBAI	YACGTR	1 cut(s)	861
BstBI	TTCGAA	1 cut(s)	690
BstC8I	GCNNGC	3 cut(s)	196, 1114, 1125
BstDEI	CTNAG	7 cut(s)	522, 585, 681, 710, 1059, 1064, 1146
BstF5I	GGATG	3 cut(s)	503, 630, 670
BstH2I	RGCGCY	1 cut(s)	1108
BstHHI	GCGC	1 cut(s)	1107
BstKTI	GATC	6 cut(s)	156, 277, 415, 646, 793, 1042
BstMAI	GTCTC	3 cut(s)	525, 677, 728
BstMBI	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 24, 27, 1113
BstNSI	RCATGY	3 cut(s)	121, 176, 323
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	881
BstV1I	GCAGC	7 cut(s)	27, 30, 39, 42, 560, 932, 1177
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	643, 1039
BstYI	RGATCY	2 cut(s)	643, 1039
BsuRI	GGCC	2 cut(s)	560, 879
BtrI	CACGTC	1 cut(s)	953
BtsCI	GGATG	3 cut(s)	503, 630, 670
BtsIMutI	CAGTG	2 cut(s)	294, 530
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	196, 1114, 1125
CfoI	GCGC	1 cut(s)	1107
Cfr13I	GGNCC	3 cut(s)	877, 878, 1176
Csp6I	GTAC	4 cut(s)	323, 421, 967, 1157
CviAII	CATG	5 cut(s)	118, 173, 320, 478, 508
CviQI	GTAC	4 cut(s)	323, 421, 967, 1157
DdeI	CTNAG	7 cut(s)	522, 585, 681, 710, 1059, 1064, 1146
DpnI	GATC	6 cut(s)	155, 276, 414, 645, 792, 1041
DpnII	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
DraI	TTTAAA	1 cut(s)	340
DriI	GACNNNNNGTC	1 cut(s)	805
Eam1104I	CTCTTC	2 cut(s)	309, 1089
Eam1105I	GACNNNNNGTC	1 cut(s)	805
EarI	CTCTTC	2 cut(s)	309, 1089
Ecl136II	GAGCTC	2 cut(s)	51, 1063
Eco130I	CCWWGG	1 cut(s)	561
Eco24I	GRGCYC	3 cut(s)	53, 881, 1065
Eco47I	GGWCC	1 cut(s)	1176
Eco53kI	GAGCTC	2 cut(s)	51, 1063
Eco57I	CTGAAG	1 cut(s)	318
EcoICRI	GAGCTC	2 cut(s)	51, 1063
EcoO109I	RGGNCCY	1 cut(s)	878
EcoRI	GAATTC	2 cut(s)	178, 463
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	3 cut(s)	53, 881, 1065
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	5 cut(s)	121, 176, 323, 481, 511
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	117, 172, 319, 477, 507
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	7 cut(s)	16, 19, 28, 31, 574, 921, 1191
FokI	GGATG	3 cut(s)	490, 637, 677
FriOI	GRGCYC	3 cut(s)	53, 881, 1065
Fsp4HI	GCNGC	7 cut(s)	16, 19, 28, 31, 574, 921, 1191
FspBI	CTAG	6 cut(s)	437, 488, 621, 744, 824, 1043
GlaI	GCGC	1 cut(s)	1106
GluI	GCNGC	7 cut(s)	16, 19, 28, 31, 574, 921, 1191
HaeII	RGCGCY	1 cut(s)	1108
HaeIII	GGCC	2 cut(s)	560, 879
HhaI	GCGC	1 cut(s)	1107
Hin1II	CATG	5 cut(s)	121, 176, 323, 481, 511
Hin6I	GCGC	1 cut(s)	1105
HinP1I	GCGC	1 cut(s)	1105
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	3 cut(s)	142, 545, 719
HinfI	GANTC	5 cut(s)	128, 494, 518, 628, 806
Hpy166II	GTNNAC	3 cut(s)	304, 376, 821
Hpy188I	TCNGA	7 cut(s)	190, 733, 759, 847, 957, 1067, 1199
Hpy188III	TCNNGA	7 cut(s)	157, 241, 254, 611, 641, 647, 1049
Hpy8I	GTNNAC	3 cut(s)	304, 376, 821
HpyAV	CCTTC	1 cut(s)	1012
HpyCH4III	ACNGT	2 cut(s)	380, 607
HpyCH4IV	ACGT	2 cut(s)	860, 952
HpyCH4V	TGCA	8 cut(s)	93, 172, 198, 271, 477, 668, 920, 1116
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 24, 27, 1113
HpyF3I	CTNAG	7 cut(s)	522, 585, 681, 710, 1059, 1064, 1146
HpySE526I	ACGT	2 cut(s)	860, 952
Hsp92II	CATG	5 cut(s)	121, 176, 323, 481, 511
HspAI	GCGC	1 cut(s)	1105
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	9 cut(s)	142, 208, 257, 281, 416, 581, 761, 927, 1065
Lsp1109I	GCAGC	7 cut(s)	27, 30, 39, 42, 560, 932, 1177
LweI	GCATC	5 cut(s)	80, 655, 907, 1125, 1136
MaeI	CTAG	6 cut(s)	437, 488, 621, 744, 824, 1043
MaeII	ACGT	2 cut(s)	860, 952
MaeIII	GTNAC	4 cut(s)	456, 907, 948, 1131
MalI	GATC	6 cut(s)	155, 276, 414, 645, 792, 1041
MboI	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
MboII	GAAGA	9 cut(s)	215, 326, 611, 727, 946, 1007, 1040, 1103, 1106
MflI	RGATCY	2 cut(s)	643, 1039
MhlI	GDGCHC	4 cut(s)	53, 860, 881, 1065
MluCI	AATT	9 cut(s)	78, 178, 216, 341, 463, 469, 636, 893, 1140
MlyI	GAGTC	4 cut(s)	503, 527, 637, 815
MnlI	CCTC	9 cut(s)	30, 58, 317, 484, 643, 841, 893, 955, 1030
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	8 cut(s)	339, 383, 396, 425, 635, 723, 926, 1164
MslI	CAYNNNNRTG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	395
MwoI	GCNNNNNNNGC	4 cut(s)	15, 24, 27, 1113
NdeII	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
NlaIII	CATG	5 cut(s)	121, 176, 323, 481, 511
NlaIV	GGNNCC	2 cut(s)	879, 880
NmuCI	GTSAC	2 cut(s)	907, 948
NspI	RCATGY	3 cut(s)	121, 176, 323
NspV	TTCGAA	1 cut(s)	690
OliI	CACNNNNGTG	1 cut(s)	299
PciI	ACATGT	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	7 cut(s)	17, 20, 29, 32, 575, 922, 1192
PleI	GAGTC	4 cut(s)	502, 526, 636, 814
PpsI	GAGTC	4 cut(s)	502, 526, 636, 814
Ppu21I	YACGTR	1 cut(s)	861
PscI	ACATGT	1 cut(s)	117
Psp124BI	GAGCTC	2 cut(s)	53, 1065
PspN4I	GGNNCC	2 cut(s)	879, 880
PspOMI	GGGCCC	1 cut(s)	877
PspPI	GGNCC	3 cut(s)	877, 878, 1176
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	2 cut(s)	643, 1039
RsaI	GTAC	4 cut(s)	324, 422, 968, 1158
RsaNI	GTAC	4 cut(s)	323, 421, 967, 1157
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	2 cut(s)	53, 1065
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	8 cut(s)	339, 383, 396, 425, 635, 723, 926, 1164
SatI	GCNGC	7 cut(s)	16, 19, 28, 31, 574, 921, 1191
Sau3AI	GATC	6 cut(s)	153, 274, 412, 643, 790, 1039
Sau96I	GGNCC	3 cut(s)	877, 878, 1176
SbfI	CCTGCAGG	1 cut(s)	273
SchI	GAGTC	4 cut(s)	503, 527, 637, 815
SdaI	CCTGCAGG	1 cut(s)	273
SduI	GDGCHC	4 cut(s)	53, 860, 881, 1065
SfaNI	GCATC	5 cut(s)	80, 655, 907, 1125, 1136
SfcI	CTRYAG	1 cut(s)	269
SfuI	TTCGAA	1 cut(s)	690
SinI	GGWCC	1 cut(s)	1176
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	7 cut(s)	239, 252, 332, 395, 647, 836, 1047
SmoI	CTYRAG	7 cut(s)	239, 252, 332, 395, 647, 836, 1047
Sse8387I	CCTGCAGG	1 cut(s)	273
Sse9I	AATT	9 cut(s)	78, 178, 216, 341, 463, 469, 636, 893, 1140
SsiI	CCGC	1 cut(s)	1034
SspMI	CTAG	6 cut(s)	437, 488, 621, 744, 824, 1043
SstI	GAGCTC	2 cut(s)	53, 1065
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	380, 607
TaiI	ACGT	2 cut(s)	863, 955
TaqI	TCGA	4 cut(s)	610, 690, 798, 1119
TasI	AATT	9 cut(s)	78, 178, 216, 341, 463, 469, 636, 893, 1140
TatI	WGTACW	3 cut(s)	322, 420, 1156
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	8 cut(s)	339, 383, 396, 425, 635, 723, 926, 1164
Tru9I	TTAA	8 cut(s)	339, 383, 396, 425, 635, 723, 926, 1164
TscAI	CASTG	2 cut(s)	301, 530
TseFI	GTSAC	2 cut(s)	907, 948
TseI	GCWGC	7 cut(s)	15, 18, 27, 30, 573, 920, 1190
Tsp45I	GTSAC	2 cut(s)	907, 948
TspDTI	ATGAA	4 cut(s)	171, 405, 492, 557
TspGWI	ACGGA	2 cut(s)	475, 1189
TspRI	CASTG	2 cut(s)	301, 530
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	1176
XapI	RAATTY	4 cut(s)	178, 216, 463, 469
XceI	RCATGY	3 cut(s)	121, 176, 323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	898
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	6 cut(s)	437, 488, 621, 744, 824, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.