Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005811.1

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Reverse (-)

33696 .. 36388

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005811.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgtcgaacagcagcgggggcagcaatagtgacagctcgttcgatattgaggagctcctgcagattgggacaagatgcagagagcttaagaaagaaaaggacatgttgaaagaatcacaatcccaaagcttcgggctaatcaggagtttggatgtacatatgaagtcattatccgaattccgcacggaagacaagaaacaaattcaaatgttagagaaagaactcaagaactgctctcaagaaatagattaccttcaggatcaattaaatgcaagggacacagaagtgacctttcttgaagagcatgtacatagccttgagttgaaattagcaggcacagagaatttacaggtgacagttgacaggttaagagatgagctgaagaagtcctattcagagtgcttgttcttaatgcaagaactggaaagcaaagaagtgcagttacagaattcaaatttgtgcatagagaaactagaggagtcagtttcatccatgtcattagagtctcagtgtgaaattgagagtatgaagcttgatatgttagcgttggagcagagttgccttgaagctaagaaagtccaggaagaaactgttcgagaaaaaactaggatgaatgagttaattcaagaacttgaggttcaatgtcaggatgcacggaaaactgctgattgcgtagatatggaaaataaggaactaagggagaagcttgatgcctcagagacaaatactaggatcttttgtcagagggttgaaaaattgctggaagaggatagatttgaattcaagtcagagtctttgttaagtgagctagagggaaggcacacatattcaatagatatgagcacttgtggagaagtcttggagtcacttttttccaaattggcaatggtactggcaccagatgccgatatgatagtgaagatgaaggagatgtcacaccagatacatgaatatgaacttcttgtgaagcaactaaaggaagaactgagagaagaaaagttaaaggcaaaagaagaagctgaggatctggctcaagaaatggctgagctcagataccaacttacaggcttgcttgaagacgagtgtaagcgtcgtgcttacattgaacaagcatctctgcaaagaattgctgagttagaagcgcaggttcaaaaagcacagacaaaatcctttgctggtctcctcagtctcgatgaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

46.33

Weight (kDa)

4.7

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1135
AccB1I	GGYRCC	1 cut(s)	895
AciI	CCGC	2 cut(s)	15, 181
AclWI	GGATC	3 cut(s)	267, 740, 1032
AcsI	RAATTY	6 cut(s)	176, 201, 343, 448, 454, 779
AcuI	CTGAAG	2 cut(s)	239, 401
AfaI	GTAC	3 cut(s)	156, 309, 891
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	579
AleI	CACNNNNGTG	1 cut(s)	284
Alw21I	GWGCWC	3 cut(s)	57, 845, 1050
Alw26I	GTCTC	4 cut(s)	510, 713, 1184, 1193
AlwI	GGATC	3 cut(s)	267, 740, 1032
ApeKI	GCWGC	2 cut(s)	12, 21
ApoI	RAATTY	6 cut(s)	176, 201, 343, 448, 454, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	1144
AsuHPI	GGTGA	1 cut(s)	364
BanI	GGYRCC	1 cut(s)	895
BanII	GRGCYC	2 cut(s)	57, 1050
BarI	GAAGNNNNNNTAC	4 cut(s)	291, 323, 426, 458
BbsI	GAAGAC	2 cut(s)	195, 1083
Bbv12I	GWGCWC	3 cut(s)	57, 845, 1050
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	2 cut(s)	24, 33
BciT130I	CCWGG	1 cut(s)	581
BcoDI	GTCTC	4 cut(s)	510, 713, 1184, 1193
BfaI	CTAG	4 cut(s)	473, 606, 729, 809
BfmI	CTRYAG	1 cut(s)	59
BfrI	CTTAAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	1135
BisI	GCNGC	2 cut(s)	13, 22
BlpI	GCTNAGC	1 cut(s)	1044
BlsI	GCNGC	2 cut(s)	14, 23
Bme1390I	CCNGG	1 cut(s)	581
BmiI	GGNNCC	1 cut(s)	897
BmrFI	CCNGG	1 cut(s)	581
BmsI	GCATC	5 cut(s)	65, 640, 700, 892, 1121
BpiI	GAAGAC	2 cut(s)	195, 1083
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu1102I	GCTNAGC	1 cut(s)	1044
BpuEI	CTTGAG	5 cut(s)	209, 222, 338, 653, 1017
BsaI	GGTCTC	1 cut(s)	1184
Bse1I	ACTGG	2 cut(s)	426, 897
Bse3DI	GCAATG	1 cut(s)	891
BseBI	CCWGG	1 cut(s)	581
BseGI	GGATG	4 cut(s)	157, 488, 615, 655
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	8 cut(s)	521, 729, 977, 1011, 1035, 1063, 1122, 1198
BseNI	ACTGG	2 cut(s)	426, 897
BseRI	GAGGAG	3 cut(s)	65, 491, 1172
BseXI	GCAGC	2 cut(s)	24, 33
BsgI	GTGCAG	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	895
BsiHKAI	GWGCWC	3 cut(s)	57, 845, 1050
BslFI	GGGAC	2 cut(s)	82, 290
BsmAI	GTCTC	4 cut(s)	510, 713, 1184, 1193
BsmFI	GGGAC	2 cut(s)	82, 290
Bso31I	GGTCTC	1 cut(s)	1184
Bsp1286I	GDGCHC	3 cut(s)	57, 845, 1050
Bsp1407I	TGTACA	2 cut(s)	154, 307
Bsp143I	GATC	3 cut(s)	259, 732, 1024
Bsp1720I	GCTNAGC	1 cut(s)	1044
BspACI	CCGC	2 cut(s)	15, 181
BspCNI	CTCAG	8 cut(s)	520, 728, 978, 1012, 1036, 1062, 1123, 1197
BspLI	GGNNCC	1 cut(s)	897
BspMAI	CTGCAG	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	1135
BspPI	GGATC	3 cut(s)	267, 740, 1032
BspQI	GCTCTTC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	895
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	1184
BsrDI	GCAATG	1 cut(s)	891
BsrGI	TGTACA	2 cut(s)	154, 307
BsrI	ACTGG	2 cut(s)	426, 897
BssMI	GATC	3 cut(s)	259, 732, 1024
Bst2UI	CCWGG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	358, 592
Bst6I	CTCTTC	2 cut(s)	294, 759
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstAUI	TGTACA	2 cut(s)	154, 307
BstC8I	GCNNGC	2 cut(s)	334, 1070
BstF5I	GGATG	4 cut(s)	157, 488, 615, 655
BstHHI	GCGC	1 cut(s)	1144
BstKTI	GATC	3 cut(s)	262, 735, 1027
BstMAI	GTCTC	4 cut(s)	510, 713, 1184, 1193
BstMBI	GATC	3 cut(s)	259, 732, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 21, 902
BstNI	CCWGG	1 cut(s)	581
BstNSI	RCATGY	2 cut(s)	106, 308
BstSCI	CCNGG	1 cut(s)	579
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	24, 33
BstV2I	GAAGAC	2 cut(s)	195, 1083
BstX2I	RGATCY	2 cut(s)	732, 1024
BstYI	RGATCY	2 cut(s)	732, 1024
BtsCI	GGATG	4 cut(s)	157, 488, 615, 655
BtsIMutI	CAGTG	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	1135
Cac8I	GCNNGC	2 cut(s)	334, 1070
CfoI	GCGC	1 cut(s)	1144
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	3 cut(s)	155, 308, 890
CviAII	CATG	4 cut(s)	103, 305, 493, 947
CviQI	GTAC	3 cut(s)	155, 308, 890
DpnI	GATC	3 cut(s)	261, 734, 1026
DpnII	GATC	3 cut(s)	259, 732, 1024
Eam1104I	CTCTTC	2 cut(s)	294, 759
EarI	CTCTTC	2 cut(s)	294, 759
Ecl136II	GAGCTC	2 cut(s)	55, 1048
Eco24I	GRGCYC	2 cut(s)	57, 1050
Eco31I	GGTCTC	1 cut(s)	1184
Eco53kI	GAGCTC	2 cut(s)	55, 1048
Eco57I	CTGAAG	2 cut(s)	239, 401
EcoICRI	GAGCTC	2 cut(s)	55, 1048
EcoRI	GAATTC	3 cut(s)	176, 448, 779
EcoRII	CCWGG	1 cut(s)	579
EcoT38I	GRGCYC	2 cut(s)	57, 1050
FaeI	CATG	4 cut(s)	106, 308, 496, 950
FaqI	GGGAC	2 cut(s)	82, 290
FatI	CATG	4 cut(s)	102, 304, 492, 946
FauI	CCCGC	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	13, 22
FokI	GGATG	4 cut(s)	164, 475, 622, 662
FriOI	GRGCYC	2 cut(s)	57, 1050
Fsp4HI	GCNGC	2 cut(s)	13, 22
FspBI	CTAG	4 cut(s)	473, 606, 729, 809
GlaI	GCGC	1 cut(s)	1143
GluI	GCNGC	2 cut(s)	13, 22
HgaI	GACGC	1 cut(s)	1079
HhaI	GCGC	1 cut(s)	1144
Hin1II	CATG	4 cut(s)	106, 308, 496, 950
Hin6I	GCGC	1 cut(s)	1142
HinP1I	GCGC	1 cut(s)	1142
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	3 cut(s)	127, 530, 704
HinfI	GANTC	5 cut(s)	113, 479, 503, 791, 863
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	6 cut(s)	175, 397, 718, 744, 790, 1052
Hpy8I	GTNNAC	1 cut(s)	361
Hpy99I	CGWCG	1 cut(s)	1095
HpyAV	CCTTC	3 cut(s)	263, 810, 919
HpyCH4III	ACNGT	2 cut(s)	358, 592
HpyCH4V	TGCA	8 cut(s)	61, 78, 272, 415, 439, 462, 653, 1120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 21, 902
Hsp92II	CATG	4 cut(s)	106, 308, 496, 950
HspAI	GCGC	1 cut(s)	1142
Kzo9I	GATC	3 cut(s)	259, 732, 1024
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	3 cut(s)	52, 60, 550
Lsp1109I	GCAGC	2 cut(s)	24, 33
LweI	GCATC	5 cut(s)	65, 640, 700, 892, 1121
MaeI	CTAG	4 cut(s)	473, 606, 729, 809
MaeIII	GTNAC	6 cut(s)	29, 286, 352, 441, 864, 933
MalI	GATC	3 cut(s)	261, 734, 1026
MboI	GATC	3 cut(s)	259, 732, 1024
MflI	RGATCY	2 cut(s)	732, 1024
MhlI	GDGCHC	3 cut(s)	57, 845, 1050
MlyI	GAGTC	4 cut(s)	488, 512, 800, 872
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	9 cut(s)	43, 469, 628, 724, 738, 760, 805, 1015, 1193
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
MslI	CAYNNNNRTG	2 cut(s)	284, 951
MspA1I	CMGCKG	1 cut(s)	15
MspCI	CTTAAG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	581
MvaI	CCWGG	1 cut(s)	581
MwoI	GCNNNNNNNGC	3 cut(s)	18, 21, 902
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	3 cut(s)	259, 732, 1024
NlaIII	CATG	4 cut(s)	106, 308, 496, 950
NlaIV	GGNNCC	1 cut(s)	897
NmuCI	GTSAC	5 cut(s)	29, 286, 352, 864, 933
NspI	RCATGY	2 cut(s)	106, 308
OliI	CACNNNNGTG	1 cut(s)	284
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	14, 23
PleI	GAGTC	4 cut(s)	487, 511, 799, 871
PpsI	GAGTC	4 cut(s)	487, 511, 799, 871
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	2 cut(s)	57, 1050
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	897
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	732, 1024
RsaI	GTAC	3 cut(s)	156, 309, 891
RsaNI	GTAC	3 cut(s)	155, 308, 890
RseI	CAYNNNNRTG	2 cut(s)	284, 951
SacI	GAGCTC	2 cut(s)	57, 1050
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
SatI	GCNGC	2 cut(s)	13, 22
Sau3AI	GATC	3 cut(s)	259, 732, 1024
SchI	GAGTC	4 cut(s)	488, 512, 800, 872
ScrFI	CCNGG	1 cut(s)	581
SduI	GDGCHC	3 cut(s)	57, 845, 1050
SfaNI	GCATC	5 cut(s)	65, 640, 700, 892, 1121
SfcI	CTRYAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	284, 951
SmlI	CTYRAG	6 cut(s)	86, 224, 237, 317, 632, 1032
SmoI	CTYRAG	6 cut(s)	86, 224, 237, 317, 632, 1032
SsiI	CCGC	2 cut(s)	15, 181
SspMI	CTAG	4 cut(s)	473, 606, 729, 809
SstI	GAGCTC	2 cut(s)	57, 1050
StyD4I	CCNGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	358, 592
TaqI	TCGA	4 cut(s)	5, 42, 595, 1191
TatI	WGTACW	2 cut(s)	154, 307
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
Tru9I	TTAA	7 cut(s)	87, 266, 368, 410, 620, 800, 1001
TscAI	CASTG	1 cut(s)	515
TseFI	GTSAC	5 cut(s)	29, 286, 352, 864, 933
TseI	GCWGC	2 cut(s)	12, 21
Tsp45I	GTSAC	5 cut(s)	29, 286, 352, 864, 933
TspDTI	ATGAA	7 cut(s)	176, 477, 542, 626, 938, 963, 969
TspGWI	ACGGA	2 cut(s)	200, 670
TspRI	CASTG	1 cut(s)	515
Vha464I	CTTAAG	1 cut(s)	86
XapI	RAATTY	6 cut(s)	176, 201, 343, 448, 454, 779
XceI	RCATGY	2 cut(s)	106, 308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	883
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	4 cut(s)	473, 606, 729, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.