Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004972

Physical Location & Seq

Genomic Coordinates Forward (+)

8084894 .. 8088588

Gene Structure 3695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14277.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAGTCATTATCTGAATTCCACACAGAAGACAAGAAACAAATTCAAATGTTAGAGAAAGAACTCAAAAACTGCTCTCAAGAAATAGATTACCTTCAGGATCAACTAAATGCGAGAGACACAGAAGTGAATCTTCTGCAAGAGCATGTACATAGCCTTGAGTTGAAATTAGCAGACATGGAGACTTTACAGGTGACAGTTGACAGGTTAAGGGATGAACTGAAGAAGTCCTATTCAGAGTGCTTGTTCTTAATGCAAGAACTGGAAAACAAAGAAGTGGAGTTACAGAATTCAAATTTATTCATAGAGAAACTGGAGGAGTCCGTTTCATCCATATCATTAGAGTCTCAGTGTGAAATAGAGAGTATGAAGCTTGATATGTTAGCCTTGGAGCAGAGTTTCCTTGAAGCTAAAAAAATCCAGGAAGAAACTGTTCAAGAAAAAACTAGGATGAATGAGTTAATTCAAGAACTTGAGGTTCAATGTCAGGATGCTCAGAAAACTACTGATGACTTATATATAGAAAATAAGGAACTAAGGGAGAAGCTTGATACCTCAGAGACAAATACCAGGATCTTTTGTCAGAGGATTGAAAAGTGGCTGGAAAACGATAGATATGAATCCAAGTTAGAGTCTTTGTTGAATGAGCAAGATGAAAAGTGCACATTTTCAACAGATATGAGCACTTGTGGAGAAGTATTGGAGCCCCTTTTTTCCAAACTGGCAAAGGTACTGGCACCAGATGCCAATTTCATAGTGAAGATGAAGGAGATGTCACATCAGATACATGAATATGAACTTCTTGTGAAGCAACTAAAGGAAGAACTGAGAGAAGAAAAGTTGAAGGCAAAAGAAGAAGCTGAGGATCTGGCTCAAGAAATGGCTGAGCTCAGATACCAACTTACAGGCTTGCTTGAAGAAGAGTGTAAGCGTCGTGCTTACATTGAACAAGCATCTCTACAAAGAATTTCTGAGTTAGAAGCACAGGTTCATAAAGCACGGACAAAATCCTCTACATGTCTCCTCAGTCTTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

40.71

Weight (kDa)

4.68

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G07890 AT5G61200 AT5G61200 AT5G61200 AT5G61200
fragaria_vesca	FvH4_5g14277 FvH4_5g14277
malus_domestica	MD14G1208800.v1.1
prunus_persica	Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1 Prupe.5G201100_v2.0.a1
pyrus_communis	pycom14g17250
rosa_chinensis	RchiOBHm_Chr7g0182601
rosa_laevigata	RLG00000005117
rosa_multiflora	Rmu_sc0005811.1_g000009 Rmu_sc0013953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271130
rosa_rugosa	Rorug06G0448400 Rorug06G0448400 Rorug06G0448400 Rorug06G0448500
rosa_samantha	Rh7AG052300 Rh7BG051500 Rh7DG051500
rosa_wichuraiana	Rw7G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	736
AclWI	GGATC	3 cut(s)	108, 581, 873
AcsI	RAATTY	5 cut(s)	17, 42, 289, 295, 966
AcuI	CTGAAG	2 cut(s)	80, 242
AfaI	GTAC	2 cut(s)	150, 732
AflIII	ACRYGT	1 cut(s)	1016
AjnI	CCWGG	2 cut(s)	420, 569
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	5 cut(s)	373, 410, 547, 860, 889
AluI	AGCT	5 cut(s)	373, 410, 547, 860, 889
Alw21I	GWGCWC	3 cut(s)	665, 686, 891
Alw26I	GTCTC	5 cut(s)	111, 176, 351, 554, 1025
Alw44I	GTGCAC	1 cut(s)	661
AlwI	GGATC	3 cut(s)	108, 581, 873
ApaLI	GTGCAC	1 cut(s)	661
ApoI	RAATTY	5 cut(s)	17, 42, 289, 295, 966
Asp700I	GAANNNNTTC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	736
BanII	GRGCYC	2 cut(s)	708, 891
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
BbsI	GAAGAC	1 cut(s)	36
Bbv12I	GWGCWC	3 cut(s)	665, 686, 891
BbvCI	CCTCAGC	1 cut(s)	861
BciT130I	CCWGG	2 cut(s)	422, 571
BcoDI	GTCTC	5 cut(s)	111, 176, 351, 554, 1025
BfaI	CTAG	1 cut(s)	447
BlpI	GCTNAGC	1 cut(s)	885
Bme1390I	CCNGG	2 cut(s)	422, 571
BmiI	GGNNCC	2 cut(s)	705, 738
BmrFI	CCNGG	2 cut(s)	422, 571
BmsI	GCATC	3 cut(s)	481, 733, 962
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	335
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	4 cut(s)	63, 179, 494, 858
BsaBI	GATNNNNATC	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	387
Bse1I	ACTGG	4 cut(s)	267, 318, 726, 738
Bse8I	GATNNNNATC	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	422, 571
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	4 cut(s)	220, 329, 456, 496
BseJI	GATNNNNATC	1 cut(s)	619
BseMII	CTCAG	9 cut(s)	362, 509, 570, 818, 852, 876, 904, 963, 1039
BseNI	ACTGG	4 cut(s)	267, 318, 726, 738
BseRI	GAGGAG	2 cut(s)	332, 1013
BseSI	GKGCMC	1 cut(s)	665
BshNI	GGYRCC	1 cut(s)	736
BsiHKAI	GWGCWC	3 cut(s)	665, 686, 891
BsmAI	GTCTC	5 cut(s)	111, 176, 351, 554, 1025
Bsp1286I	GDGCHC	4 cut(s)	665, 686, 708, 891
Bsp1407I	TGTACA	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	100, 573, 865
Bsp1720I	GCTNAGC	1 cut(s)	885
BspCNI	CTCAG	9 cut(s)	361, 508, 569, 819, 853, 877, 903, 964, 1038
BspLI	GGNNCC	2 cut(s)	705, 738
BspPI	GGATC	3 cut(s)	108, 581, 873
BspT107I	GGYRCC	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	148
BsrI	ACTGG	4 cut(s)	267, 318, 726, 738
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	100, 573, 865
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	422, 571
Bst4CI	ACNGT	2 cut(s)	199, 433
Bst6I	CTCTTC	1 cut(s)	915
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	911
BstF5I	GGATG	4 cut(s)	220, 329, 456, 496
BstKTI	GATC	3 cut(s)	103, 576, 868
BstMAI	GTCTC	5 cut(s)	111, 176, 351, 554, 1025
BstMBI	GATC	3 cut(s)	100, 573, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	743
BstNI	CCWGG	2 cut(s)	422, 571
BstNSI	RCATGY	2 cut(s)	149, 1020
BstSCI	CCNGG	2 cut(s)	420, 569
BstSLI	GKGCMC	1 cut(s)	665
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	573, 865
BstYI	RGATCY	2 cut(s)	573, 865
BtsCI	GGATG	4 cut(s)	220, 329, 456, 496
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	911
CseI	GACGC	1 cut(s)	920
Csp6I	GTAC	2 cut(s)	149, 731
CviAII	CATG	4 cut(s)	146, 178, 788, 1017
CviQI	GTAC	2 cut(s)	149, 731
DpnI	GATC	3 cut(s)	102, 575, 867
DpnII	GATC	3 cut(s)	100, 573, 865
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	889
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	2 cut(s)	708, 891
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	80, 242
EcoICRI	GAGCTC	1 cut(s)	889
EcoRI	GAATTC	2 cut(s)	17, 289
EcoRII	CCWGG	2 cut(s)	420, 569
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	2 cut(s)	708, 891
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	4 cut(s)	149, 181, 791, 1020
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	4 cut(s)	145, 177, 787, 1016
FokI	GGATG	4 cut(s)	227, 316, 463, 503
FriOI	GRGCYC	2 cut(s)	708, 891
FspBI	CTAG	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	920
Hin1II	CATG	4 cut(s)	149, 181, 791, 1020
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	2 cut(s)	371, 545
HinfI	GANTC	5 cut(s)	130, 320, 344, 620, 632
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	202, 663
Hpy188I	TCNGA	8 cut(s)	16, 238, 498, 559, 585, 783, 893, 973
Hpy188III	TCNNGA	7 cut(s)	80, 98, 437, 467, 488, 875, 1031
Hpy8I	GTNNAC	2 cut(s)	202, 663
Hpy99I	CGWCG	1 cut(s)	936
HpyAV	CCTTC	3 cut(s)	104, 760, 838
HpyCH4III	ACNGT	2 cut(s)	199, 433
HpyCH4V	TGCA	3 cut(s)	139, 256, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	743
Hsp92II	CATG	4 cut(s)	149, 181, 791, 1020
Kzo9I	GATC	3 cut(s)	100, 573, 865
LmnI	GCTCC	2 cut(s)	391, 703
LweI	GCATC	3 cut(s)	481, 733, 962
MaeI	CTAG	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	193, 282, 774
MalI	GATC	3 cut(s)	102, 575, 867
MboI	GATC	3 cut(s)	100, 573, 865
MflI	RGATCY	2 cut(s)	573, 865
MhlI	GDGCHC	4 cut(s)	665, 686, 708, 891
MluCI	AATT	8 cut(s)	17, 42, 167, 289, 295, 462, 748, 966
MlyI	GAGTC	3 cut(s)	329, 353, 641
MnlI	CCTC	7 cut(s)	310, 469, 565, 579, 856, 1021, 1034
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	3 cut(s)	209, 251, 461
MslI	CAYNNNNRTG	2 cut(s)	125, 792
MspR9I	CCNGG	2 cut(s)	422, 571
MvaI	CCWGG	2 cut(s)	422, 571
MwoI	GCNNNNNNNGC	1 cut(s)	743
NdeII	GATC	3 cut(s)	100, 573, 865
NlaIII	CATG	4 cut(s)	149, 181, 791, 1020
NlaIV	GGNNCC	2 cut(s)	705, 738
NmuCI	GTSAC	2 cut(s)	193, 774
NspI	RCATGY	2 cut(s)	149, 1020
OliI	CACNNNNGTG	1 cut(s)	125
PciI	ACATGT	1 cut(s)	1016
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	130, 620
PfoI	TCCNGGA	1 cut(s)	420
PleI	GAGTC	3 cut(s)	328, 352, 640
PpsI	GAGTC	3 cut(s)	328, 352, 640
PscI	ACATGT	1 cut(s)	1016
Psp124BI	GAGCTC	1 cut(s)	891
Psp6I	CCWGG	2 cut(s)	420, 569
PspGI	CCWGG	2 cut(s)	420, 569
PspN4I	GGNNCC	2 cut(s)	705, 738
PsuI	RGATCY	2 cut(s)	573, 865
RsaI	GTAC	2 cut(s)	150, 732
RsaNI	GTAC	2 cut(s)	149, 731
RseI	CAYNNNNRTG	2 cut(s)	125, 792
SacI	GAGCTC	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	209, 251, 461
Sau3AI	GATC	3 cut(s)	100, 573, 865
SchI	GAGTC	3 cut(s)	329, 353, 641
ScrFI	CCNGG	2 cut(s)	422, 571
SduI	GDGCHC	4 cut(s)	665, 686, 708, 891
SfaNI	GCATC	3 cut(s)	481, 733, 962
SmiMI	CAYNNNNRTG	2 cut(s)	125, 792
SmlI	CTYRAG	4 cut(s)	78, 158, 473, 873
SmoI	CTYRAG	4 cut(s)	78, 158, 473, 873
Sse9I	AATT	8 cut(s)	17, 42, 167, 289, 295, 462, 748, 966
SspMI	CTAG	1 cut(s)	447
SstI	GAGCTC	1 cut(s)	891
StyD4I	CCNGG	2 cut(s)	420, 569
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	199, 433
TasI	AATT	8 cut(s)	17, 42, 167, 289, 295, 462, 748, 966
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	130, 620
Tru1I	TTAA	3 cut(s)	209, 251, 461
Tru9I	TTAA	3 cut(s)	209, 251, 461
TscAI	CASTG	1 cut(s)	356
TseFI	GTSAC	2 cut(s)	193, 774
Tsp45I	GTSAC	2 cut(s)	193, 774
TspGWI	ACGGA	2 cut(s)	313, 1015
TspRI	CASTG	1 cut(s)	356
VneI	GTGCAC	1 cut(s)	661
XapI	RAATTY	5 cut(s)	17, 42, 289, 295, 966
XceI	RCATGY	2 cut(s)	149, 1020
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.