Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Forward (+)

25050152 .. 25052054

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAAAGTCTCGCACACATTCCTCCCGGTTATCGATTCCATCCGACCGATGAAGAACTCGTTGACTATTATCTCAAGAACAAAGTTGCATTCCCGGGAATGCAAGTTGATGTTATCAAAGATGTTGATCTCTACAAAATCGAGCCATGGGACATCCAAGAGTTATGTGGAAGAGGGACAGGAGAAGAGAGGGAATGGTATTTCTTTAGCCACAAGGACAAGAAATATCCAACTGGGACACGAACCAATAGAGCAACGGGCTCCGGATTTTGGAAAGCAACGGGTCGAGACAAGGCCATTTACTCAAAGCAAGAGCTTGTTGGGATGAGGAAGACTCTTGTCTTTTACAAAGGTAGGGCCCCAAATGGTCAGAAATCTGATTGGATAATGCACGAATACCGTCTTGAGACCGATGAAAATGGACCGCCTCATGAGGAAGGATGGGTGGTTTGTCGCGCTTTCAAGAAGAAGCTAACCACGATGAACTACAACAATCCAAGAACAATGATGGGATCATCATCAGGCCAAGAATCTAACTGGTTCACGCAGCAAATGGATGTGGGGAATGGTAATTACTATCATCTTCCTGATCTAGAGAGTCCGAGAATGTTTCAAGGCTCATCATCATCATCACTATCATCATTACATCAGAATGATCAAGACCCTTATGGTGTCGTACTCAGCACTATTAACGCAACCCCAACTACAATAATGCAACGAGATGATGGTCATGTGATTACCAATGATGATGATCATATGATCATGATGAACACAAGTACTGGTGATCATCATCAATCAGGATTACTAGTCAATGATGATCATAATGATCAAGTAATGGATTGGCAAACGCTTGACAAGTTTGTTGCTTCTCAGCTAATCATGAGCCAAGAAGAGGAAGAAGTTAACAAAGATCCATCAGATAATTCTTCGAATGAAACATTTCATCATCTCTCTGAAGAGCAAGCTGCAACAATGGTTTCGATGAATGCTTCTTCCTCTTCTTCTCCATGTTCCTTCTACTCTTGGGCTCAAAATACACACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0008150 GO:0008152 GO:0009505 GO:0009531 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010941 GO:0010942 GO:0010981 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071704 GO:0071944 GO:0080090 GO:0090058 GO:0097159 GO:0097305 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

348

Amino Acids

39.73

Weight (kDa)

5.14

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 135	1.1e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	1 cut(s)	263
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	2 cut(s)	520, 905
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	2 cut(s)	678, 778
AfiI	CCNNNNNNNGG	2 cut(s)	270, 892
AflIII	ACRYGT	1 cut(s)	1041
AgsI	TTSAA	2 cut(s)	463, 614
AhlI	ACTAGT	1 cut(s)	805
AluBI	AGCT	4 cut(s)	316, 472, 874, 965
AluI	AGCT	4 cut(s)	316, 472, 874, 965
Alw26I	GTCTC	3 cut(s)	14, 282, 401
AlwI	GGATC	2 cut(s)	520, 905
Ama87I	CYCGRG	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	263
AoxI	GGCC	3 cut(s)	294, 357, 523
ApaI	GGGCCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	547, 965
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	357, 358, 422
AsuC2I	CCSGG	3 cut(s)	27, 95, 96
AsuHPI	GGTGA	1 cut(s)	794
AsuII	TTCGAA	1 cut(s)	929
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	361
BanII	GRGCYC	3 cut(s)	263, 361, 1030
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	559, 952
BccI	CCATC	5 cut(s)	48, 435, 502, 719, 922
BclI	TGATCA	6 cut(s)	655, 751, 759, 784, 817, 826
BcnI	CCSGG	3 cut(s)	27, 95, 96
BcoDI	GTCTC	3 cut(s)	14, 282, 401
BcuI	ACTAGT	1 cut(s)	805
BfaI	CTAG	2 cut(s)	593, 806
BisI	GCNGC	2 cut(s)	548, 966
BlsI	GCNGC	2 cut(s)	549, 967
BmcAI	AGTACT	1 cut(s)	778
Bme1390I	CCNGG	3 cut(s)	27, 95, 96
Bme18I	GGWCC	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	3 cut(s)	357, 358, 422
BmiI	GGNNCC	3 cut(s)	262, 359, 360
BmrFI	CCNGG	3 cut(s)	27, 95, 96
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
Bpu14I	TTCGAA	1 cut(s)	929
BpuEI	CTTGAG	2 cut(s)	59, 425
BpuMI	CCSGG	3 cut(s)	27, 95, 96
Bsa29I	ATCGAT	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	1044
BsaBI	GATNNNNATC	4 cut(s)	126, 517, 750, 789
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	94, 146
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 892
Bse1I	ACTGG	3 cut(s)	238, 542, 784
Bse8I	GATNNNNATC	4 cut(s)	126, 517, 750, 789
BseAI	TCCGGA	1 cut(s)	263
BseCI	ATCGAT	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	94, 146
BseGI	GGATG	5 cut(s)	40, 153, 330, 446, 562
BseJI	GATNNNNATC	4 cut(s)	126, 517, 750, 789
BseLI	CCNNNNNNNGG	2 cut(s)	270, 892
BseMII	CTCAG	2 cut(s)	694, 884
BseNI	ACTGG	3 cut(s)	238, 542, 784
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	559, 952
Bsh1236I	CGCG	1 cut(s)	456
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	296, 359, 525
BshVI	ATCGAT	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	27, 95, 264
BslFI	GGGAC	3 cut(s)	164, 190, 250
BslI	CCNNNNNNNGG	2 cut(s)	270, 892
BsmAI	GTCTC	3 cut(s)	14, 282, 401
BsmFI	GGGAC	3 cut(s)	164, 190, 250
BsmI	GAATGC	3 cut(s)	89, 105, 991
BsnI	GGCC	3 cut(s)	296, 359, 525
Bso31I	GGTCTC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	929
Bsp120I	GGGCCC	1 cut(s)	357
Bsp1286I	GDGCHC	3 cut(s)	263, 361, 1030
Bsp13I	TCCGGA	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	425
BspANI	GGCC	3 cut(s)	296, 359, 525
BspCNI	CTCAG	2 cut(s)	693, 883
BspDI	ATCGAT	1 cut(s)	34
BspEI	TCCGGA	1 cut(s)	263
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	3 cut(s)	430, 762, 879
BspLI	GGNNCC	3 cut(s)	262, 359, 360
BspPI	GGATC	2 cut(s)	520, 905
BspQI	GCTCTTC	1 cut(s)	951
BspT104I	TTCGAA	1 cut(s)	929
BspTNI	GGTCTC	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	238, 542, 784
BssECI	CCNNGG	2 cut(s)	94, 146
BssT1I	CCWWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	5 cut(s)	166, 180, 885, 951, 1003
BstBAI	YACGTR	1 cut(s)	1044
BstBI	TTCGAA	1 cut(s)	929
BstC8I	GCNNGC	1 cut(s)	963
BstDEI	CTNAG	2 cut(s)	680, 870
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	5 cut(s)	40, 153, 330, 446, 562
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	458
BstMAI	GTCTC	3 cut(s)	14, 282, 401
BstMCI	CGRYCG	1 cut(s)	48
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	25, 93, 94
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	1 cut(s)	456
BstV1I	GCAGC	2 cut(s)	559, 952
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	910
Bsu15I	ATCGAT	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	296, 359, 525
BsuTUI	ATCGAT	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	5 cut(s)	40, 153, 330, 446, 562
Cac8I	GCNNGC	1 cut(s)	963
CciI	TCATGA	3 cut(s)	430, 762, 879
CfoI	GCGC	1 cut(s)	458
Cfr13I	GGNCC	3 cut(s)	357, 358, 422
Cfr9I	CCCGGG	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	677, 777
CviAII	CATG	6 cut(s)	147, 431, 731, 763, 880, 1008
CviQI	GTAC	2 cut(s)	677, 777
DdeI	CTNAG	2 cut(s)	680, 870
Eam1104I	CTCTTC	5 cut(s)	166, 180, 885, 951, 1003
EarI	CTCTTC	5 cut(s)	166, 180, 885, 951, 1003
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	3 cut(s)	263, 361, 1030
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	357, 358
EcoT14I	CCWWGG	1 cut(s)	146
EcoT38I	GRGCYC	3 cut(s)	263, 361, 1030
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	6 cut(s)	150, 434, 734, 766, 883, 1011
FaqI	GGGAC	3 cut(s)	164, 190, 250
FatI	CATG	6 cut(s)	146, 430, 730, 762, 879, 1007
FauNDI	CATATG	1 cut(s)	756
FbaI	TGATCA	6 cut(s)	655, 751, 759, 784, 817, 826
Fnu4HI	GCNGC	2 cut(s)	548, 966
FokI	GGATG	5 cut(s)	27, 140, 337, 453, 569
FriOI	GRGCYC	3 cut(s)	263, 361, 1030
Fsp4HI	GCNGC	2 cut(s)	548, 966
FspBI	CTAG	2 cut(s)	593, 806
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	2 cut(s)	548, 966
HaeIII	GGCC	3 cut(s)	296, 359, 525
HapII	CCGG	3 cut(s)	27, 95, 264
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	6 cut(s)	150, 434, 734, 766, 883, 1011
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HincII	GTYRAC	2 cut(s)	64, 904
HindII	GTYRAC	2 cut(s)	64, 904
HinfI	GANTC	4 cut(s)	36, 334, 530, 598
HpaI	GTTAAC	1 cut(s)	904
HpaII	CCGG	3 cut(s)	27, 95, 264
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	3 cut(s)	64, 543, 904
Hpy188I	TCNGA	7 cut(s)	45, 372, 379, 603, 651, 919, 955
Hpy8I	GTNNAC	3 cut(s)	64, 543, 904
HpyAV	CCTTC	2 cut(s)	431, 1024
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	1043
HpyCH4V	TGCA	5 cut(s)	89, 103, 391, 715, 968
HpyF3I	CTNAG	2 cut(s)	680, 870
HpySE526I	ACGT	1 cut(s)	1043
Hsp92II	CATG	6 cut(s)	150, 434, 734, 766, 883, 1011
HspAI	GCGC	1 cut(s)	456
Kpn2I	TCCGGA	1 cut(s)	263
Ksp22I	TGATCA	6 cut(s)	655, 751, 759, 784, 817, 826
KspAI	GTTAAC	1 cut(s)	904
LguI	GCTCTTC	1 cut(s)	951
LmnI	GCTCC	1 cut(s)	266
Lsp1109I	GCAGC	2 cut(s)	559, 952
MaeI	CTAG	2 cut(s)	593, 806
MaeII	ACGT	1 cut(s)	1043
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	3 cut(s)	263, 361, 1030
MluCI	AATT	2 cut(s)	571, 922
MlyI	GAGTC	2 cut(s)	328, 607
MmeI	TCCRAC	2 cut(s)	68, 254
MnlI	CCTC	8 cut(s)	33, 167, 183, 321, 427, 438, 886, 1006
MroI	TCCGGA	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	2 cut(s)	690, 903
MslI	CAYNNNNRTG	1 cut(s)	651
MspI	CCGG	3 cut(s)	27, 95, 264
MspR9I	CCNGG	3 cut(s)	27, 95, 96
Mva1269I	GAATGC	3 cut(s)	89, 105, 991
MvnI	CGCG	1 cut(s)	456
NciI	CCSGG	3 cut(s)	27, 95, 96
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	756
NlaIII	CATG	6 cut(s)	150, 434, 734, 766, 883, 1011
NlaIV	GGNNCC	3 cut(s)	262, 359, 360
NspV	TTCGAA	1 cut(s)	929
PagI	TCATGA	3 cut(s)	430, 762, 879
PciSI	GCTCTTC	1 cut(s)	951
PctI	GAATGC	3 cut(s)	89, 105, 991
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	36, 530
PkrI	GCNGC	2 cut(s)	549, 967
PleI	GAGTC	2 cut(s)	328, 606
PpsI	GAGTC	2 cut(s)	328, 606
Ppu21I	YACGTR	1 cut(s)	1044
PshAI	GACNNNNGTC	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	262, 359, 360
PspOMI	GGGCCC	1 cut(s)	357
PspPI	GGNCC	3 cut(s)	357, 358, 422
PsuI	RGATCY	1 cut(s)	910
RsaI	GTAC	2 cut(s)	678, 778
RsaNI	GTAC	2 cut(s)	677, 777
RseI	CAYNNNNRTG	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	951
SaqAI	TTAA	2 cut(s)	690, 903
SatI	GCNGC	2 cut(s)	548, 966
Sau96I	GGNCC	3 cut(s)	357, 358, 422
ScaI	AGTACT	1 cut(s)	778
SchI	GAGTC	2 cut(s)	328, 607
ScrFI	CCNGG	3 cut(s)	27, 95, 96
SduI	GDGCHC	3 cut(s)	263, 361, 1030
SetI	ASST	6 cut(s)	318, 355, 474, 876, 967, 1046
SfuI	TTCGAA	1 cut(s)	929
SinI	GGWCC	1 cut(s)	422
SmaI	CCCGGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	2 cut(s)	74, 404
SmoI	CTYRAG	2 cut(s)	74, 404
SpeI	ACTAGT	1 cut(s)	805
Sse9I	AATT	2 cut(s)	571, 922
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	2 cut(s)	593, 806
StyD4I	CCNGG	3 cut(s)	25, 93, 94
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	1046
TaqI	TCGA	5 cut(s)	34, 141, 286, 929, 980
TaqII	GACCGA	2 cut(s)	62, 425
TasI	AATT	2 cut(s)	571, 922
TatI	WGTACW	1 cut(s)	776
TfiI	GAWTC	2 cut(s)	36, 530
Tru1I	TTAA	2 cut(s)	690, 903
Tru9I	TTAA	2 cut(s)	690, 903
TseI	GCWGC	2 cut(s)	547, 965
TspDTI	ATGAA	7 cut(s)	66, 429, 497, 782, 932, 948, 998
TspMI	CCCGGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	422
XbaI	TCTAGA	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	2 cut(s)	593, 806
ZrmI	AGTACT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.