Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

23991503 .. 23992114

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTATTGTATTACTTTTACAAGAGAGCACACTTTGAATGGTCAGTGTTCATACTCTATTCTTGTGCAATTGAAGCAGGAAGAAGGATGGGTTGTATGTAGGGTGTTCAAGAAGAAAATTGCAAGCATGAGAATTAAGATGAGTGAAAATGAGTCACCATGTTGGTACGATGACCAAGTCTCCTTCATGCCAGAATTGGACTCACCAGGGCACAATTCTAGCTCTATGAACATGAACATGGTGCCATACCACCACCTTCCTAATTATCCATGCAAGAAAGAGCTTGATCACTTGCCCTTCCAGGTTCCCCATGAGCACTTCTTCCAGCTCCCTCTTCTTGGAAGCCCGAAACTAGTTCAATCATCATCAGCCACAGCTGTAAGCAGCTCCAACTCCATGGCACCTCATGCATATAGTATCGACATTAACCACACTTGCACTTTTCAGTCATCGGATCAAGATCAAAACTTTCAAGGTGTAGTCTATGGTAACAGTAGTAATGACGATCATCAGCGAGCAGTAGATCAGCTGACTGATTGGCGAGCGCTGGACAAGTTTGTAGCTTCACAGCTCAGCCAGGATGATGCTTCAAAAGGAAATAGCTACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

204

Amino Acids

23.05

Weight (kDa)

5.74

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	241, 400
AclWI	GGATC	1 cut(s)	462
AfaI	GTAC	1 cut(s)	167
AfeI	AGCGCT	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	6 cut(s)	37, 73, 109, 359, 473, 591
AhlI	ACTAGT	1 cut(s)	352
AjnI	CCWGG	3 cut(s)	205, 300, 576
AluBI	AGCT	9 cut(s)	222, 283, 328, 377, 387, 529, 563, 571, 603
AluI	AGCT	9 cut(s)	222, 283, 328, 377, 387, 529, 563, 571, 603
Alw21I	GWGCWC	2 cut(s)	30, 318
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	462
Aor51HI	AGCGCT	1 cut(s)	546
ApeKI	GCWGC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	147, 195
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	241, 400
Bbv12I	GWGCWC	2 cut(s)	30, 318
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	81
BciT130I	CCWGG	3 cut(s)	207, 302, 578
BclI	TGATCA	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	352
BfaI	CTAG	2 cut(s)	219, 353
BfoI	RGCGCY	1 cut(s)	548
BisI	GCNGC	1 cut(s)	385
BlpI	GCTNAGC	1 cut(s)	572
BlsI	GCNGC	1 cut(s)	386
Bme1390I	CCNGG	3 cut(s)	207, 302, 578
BmiI	GGNNCC	3 cut(s)	243, 306, 402
BmrFI	CCNGG	3 cut(s)	207, 302, 578
BmsI	GCATC	1 cut(s)	574
Bpu1102I	GCTNAGC	1 cut(s)	572
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	206, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	3 cut(s)	207, 302, 578
BseDI	CCNNGG	2 cut(s)	206, 396
BseGI	GGATG	2 cut(s)	92, 586
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	586
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	396
BshNI	GGYRCC	2 cut(s)	241, 400
BsiHKAI	GWGCWC	2 cut(s)	30, 318
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	3 cut(s)	30, 213, 318
Bsp143I	GATC	5 cut(s)	286, 454, 460, 505, 523
Bsp1720I	GCTNAGC	1 cut(s)	572
Bsp19I	CCATGG	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	608
BspLI	GGNNCC	3 cut(s)	243, 306, 402
BspPI	GGATC	1 cut(s)	462
BspT107I	GGYRCC	2 cut(s)	241, 400
BssECI	CCNNGG	2 cut(s)	206, 396
BssMI	GATC	5 cut(s)	286, 454, 460, 505, 523
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	3 cut(s)	207, 302, 578
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	124, 516, 543
BstDEI	CTNAG	1 cut(s)	572
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	92, 586
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	5 cut(s)	289, 457, 463, 508, 526
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	5 cut(s)	286, 454, 460, 505, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 407
BstNI	CCWGG	3 cut(s)	207, 302, 578
BstSCI	CCNGG	3 cut(s)	205, 300, 576
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	92, 586
BtsIMutI	CAGTG	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	124, 516, 543
CciI	TCATGA	1 cut(s)	608
CfoI	GCGC	1 cut(s)	547
Csp6I	GTAC	1 cut(s)	166
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	572
DpnI	GATC	5 cut(s)	288, 456, 462, 507, 525
DpnII	GATC	5 cut(s)	286, 454, 460, 505, 523
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	396
Eco47III	AGCGCT	1 cut(s)	546
EcoRII	CCWGG	3 cut(s)	205, 300, 576
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	385
FokI	GGATG	2 cut(s)	99, 593
Fsp4HI	GCNGC	1 cut(s)	385
FspBI	CTAG	2 cut(s)	219, 353
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	548
HhaI	GCGC	1 cut(s)	547
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HinfI	GANTC	2 cut(s)	152, 200
HphI	GGTGA	2 cut(s)	147, 195
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	3 cut(s)	109, 458, 609
HpyAV	CCTTC	4 cut(s)	77, 193, 266, 307
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	67, 122, 273, 410, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 407
HpyF3I	CTNAG	1 cut(s)	572
HspAI	GCGC	1 cut(s)	545
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	286, 454, 460, 505, 523
LmnI	GCTCC	2 cut(s)	333, 392
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	574
MaeI	CTAG	2 cut(s)	219, 353
MaeIII	GTNAC	2 cut(s)	153, 488
MalI	GATC	5 cut(s)	288, 456, 462, 507, 525
MboI	GATC	5 cut(s)	286, 454, 460, 505, 523
MboII	GAAGA	4 cut(s)	92, 124, 313, 326
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	3 cut(s)	30, 213, 318
MluCI	AATT	6 cut(s)	68, 117, 132, 194, 214, 262
MlyI	GAGTC	2 cut(s)	161, 194
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	2 cut(s)	342, 414
Mph1103I	ATGCAT	1 cut(s)	412
MseI	TTAA	2 cut(s)	135, 426
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	377, 529
MspR9I	CCNGG	3 cut(s)	207, 302, 578
MunI	CAATTG	1 cut(s)	68
MvaI	CCWGG	3 cut(s)	207, 302, 578
MwoI	GCNNNNNNNGC	2 cut(s)	73, 407
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	286, 454, 460, 505, 523
NlaIV	GGNNCC	3 cut(s)	243, 306, 402
NmuCI	GTSAC	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	412
PagI	TCATGA	1 cut(s)	608
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	386
PleI	GAGTC	2 cut(s)	160, 194
PpsI	GAGTC	2 cut(s)	160, 194
Psp6I	CCWGG	3 cut(s)	205, 300, 576
PspGI	CCWGG	3 cut(s)	205, 300, 576
PspN4I	GGNNCC	3 cut(s)	243, 306, 402
PsyI	GACNNNGTC	1 cut(s)	176
PvuII	CAGCTG	2 cut(s)	377, 529
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	135, 426
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	5 cut(s)	286, 454, 460, 505, 523
SchI	GAGTC	2 cut(s)	161, 194
ScrFI	CCNGG	3 cut(s)	207, 302, 578
SduI	GDGCHC	3 cut(s)	30, 213, 318
SfaNI	GCATC	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	352
Sse9I	AATT	6 cut(s)	68, 117, 132, 194, 214, 262
SspMI	CTAG	2 cut(s)	219, 353
StyD4I	CCNGG	3 cut(s)	205, 300, 576
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	1 cut(s)	420
TasI	AATT	6 cut(s)	68, 117, 132, 194, 214, 262
Tru1I	TTAA	2 cut(s)	135, 426
Tru9I	TTAA	2 cut(s)	135, 426
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	4 cut(s)	39, 175, 242, 248
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	219, 353
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.