Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

27875877 .. 27879693

Gene Structure 3817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G278100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAATACTTTTTCACATGTTCCTCCTGGTTTCCGATTCCATCCAACGGATGAAGAACTTGTTGATTACTACCTCAGGAAAAAGGTTAGTTCAAGAAGGATTGACCTTGATGTTATCAAAGATGTAGACCTCTATAAAATTGAGCCATGGGATCTTCAAGAATTATGCAGAATAGGGACAGAAGAGCAAAACGAATGGTACTTTTTTAGCCACAAAGACAAGAAGTATCCCACTGGAACTCGAACAAATAGAGCCACCGCTGCAGGCTTCTGGAAAGCCACAGGTAGAGACAAGGCCATTTACTCAAAGCATGACTTAATTGGCATGAGGAAGACCTTAGTATTCTATAAAGGGCGAGCCCCAAATGGACAAAAGTCAGATTGGATTATGCACGAATACCGTCTTGAAACCGATGAAAATGGAACTCCACAGCAGGAAGAAGGCTGGGTTGTGTGTAGGGTTTTCAAGAAAAAAATTGCAAGCATGAGAATTAAAATGAGTGAACATGAGTCACCATGTTGGTATGATGACCAAGTCTCCTTCATGCCGGACTTGGACTCACCAAACCAAAACTCAAACTCCAACATTAATATGGCACCATACCACCACCTTCCTTACCCTTGCAAGAAAGAGCTGGATCACTTGCCAGCTTTCCAGGTTCCCCATGAGCACTTCTTCCAGCTCCCCCTTCTGGGGAGCCCAAAACTACTCCAATCTTCAGCCACAGGTGTAAGCAGCTCCAACTCCATGGCAGCTCATGCATATAGTATTGACATAAACCACGCTTGCACTTTTCAGCCGTCGGATCAAGATCAAAACTTTCATGGAGCAGTCTATGGTAATAACAGTAATGATGATCATCAGCAAGCCGTAGATCAACTGACCGATTGGCGAATGCTTGACAAGTTTGTAGCTTCACAGCTCAGCCAGGATGATGCTTCTAATAAGGGAAATAGCTACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

322

Amino Acids

37.06

Weight (kDa)

6.09

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	3 cut(s)	159, 645, 813
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	4 cut(s)	46, 691, 692, 693
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	93, 158, 407, 466
AjnI	CCWGG	3 cut(s)	25, 654, 927
AluBI	AGCT	8 cut(s)	634, 650, 682, 738, 755, 914, 922, 957
AluI	AGCT	8 cut(s)	634, 650, 682, 738, 755, 914, 922, 957
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	282, 541
AlwI	GGATC	3 cut(s)	159, 645, 813
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	260, 735, 752
AseI	ATTAAT	1 cut(s)	588
AsuHPI	GGTGA	2 cut(s)	504, 552
AxyI	CCTNAGG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	2 cut(s)	361, 701
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	247, 747, 764
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	784, 854
BciT130I	CCWGG	3 cut(s)	27, 656, 929
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	2 cut(s)	282, 541
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	3 cut(s)	261, 736, 753
BlpI	GCTNAGC	1 cut(s)	923
BlsI	GCNGC	3 cut(s)	262, 737, 754
Bme1390I	CCNGG	3 cut(s)	27, 656, 929
BmiI	GGNNCC	3 cut(s)	597, 660, 698
BmrFI	CCNGG	3 cut(s)	27, 656, 929
BmsI	GCATC	1 cut(s)	925
BoxI	GACNNNNGTC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	923
BsaBI	GATNNNNATC	2 cut(s)	810, 858
BsaJI	CCNNGG	2 cut(s)	146, 747
BsaXI	ACNNNNNCTCC	4 cut(s)	521, 551, 563, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 691, 692, 693
Bse1I	ACTGG	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	74
Bse8I	GATNNNNATC	2 cut(s)	810, 858
BseBI	CCWGG	3 cut(s)	27, 656, 929
BseDI	CCNNGG	2 cut(s)	146, 747
BseGI	GGATG	3 cut(s)	40, 55, 937
BseJI	GATNNNNATC	2 cut(s)	810, 858
BseLI	CCNNNNNNNGG	4 cut(s)	46, 691, 692, 693
BseMII	CTCAG	2 cut(s)	88, 937
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	247, 747, 764
BseYI	CCCAGC	1 cut(s)	444
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	46, 691, 692, 693
BsmAI	GTCTC	2 cut(s)	282, 541
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	361, 672, 701
Bsp143I	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
Bsp1720I	GCTNAGC	1 cut(s)	923
Bsp19I	CCATGG	2 cut(s)	146, 747
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	87, 936
BspHI	TCATGA	1 cut(s)	962
BspLI	GGNNCC	3 cut(s)	597, 660, 698
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	3 cut(s)	159, 645, 813
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	146, 747
BssMI	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
BssT1I	CCWWGG	2 cut(s)	146, 747
Bst2UI	CCWGG	3 cut(s)	27, 656, 929
Bst4CI	ACNGT	2 cut(s)	401, 848
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	6 cut(s)	265, 357, 481, 648, 787, 867
BstDEI	CTNAG	3 cut(s)	74, 337, 923
BstDSI	CCRYGG	2 cut(s)	146, 747
BstF5I	GGATG	3 cut(s)	40, 55, 937
BstKTI	GATC	6 cut(s)	154, 640, 808, 814, 859, 877
BstMAI	GTCTC	2 cut(s)	282, 541
BstMBI	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 758
BstNI	CCWGG	3 cut(s)	27, 656, 929
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	1 cut(s)	373
BstSCI	CCNGG	3 cut(s)	25, 654, 927
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	247, 747, 764
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	2 cut(s)	146, 747
BtsCI	GGATG	3 cut(s)	40, 55, 937
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	6 cut(s)	265, 357, 481, 648, 787, 867
CciI	TCATGA	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	199
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	3 cut(s)	74, 337, 923
DpnI	GATC	6 cut(s)	153, 639, 807, 813, 858, 876
DpnII	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	146, 747
Eco24I	GRGCYC	2 cut(s)	361, 701
Eco57I	CTGAAG	1 cut(s)	702
Eco81I	CCTNAGG	1 cut(s)	74
EcoRII	CCWGG	3 cut(s)	25, 654, 927
EcoT14I	CCWWGG	2 cut(s)	146, 747
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	2 cut(s)	361, 701
ErhI	CCWWGG	2 cut(s)	146, 747
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	856
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	261, 736, 753
FokI	GGATG	3 cut(s)	27, 62, 944
FriOI	GRGCYC	2 cut(s)	361, 701
Fsp4HI	GCNGC	3 cut(s)	261, 736, 753
GluI	GCNGC	3 cut(s)	261, 736, 753
GsaI	CCCAGC	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	548
HinfI	GANTC	3 cut(s)	36, 509, 557
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	2 cut(s)	504, 552
Hpy166II	GTNNAC	2 cut(s)	127, 503
Hpy188I	TCNGA	3 cut(s)	35, 379, 805
Hpy188III	TCNNGA	8 cut(s)	76, 93, 158, 271, 404, 466, 809, 963
Hpy8I	GTNNAC	2 cut(s)	127, 503
Hpy99I	CGWCG	1 cut(s)	805
HpyAV	CCTTC	5 cut(s)	90, 434, 550, 620, 698
HpyCH4III	ACNGT	2 cut(s)	401, 848
HpyCH4V	TGCA	7 cut(s)	168, 263, 391, 479, 624, 761, 789
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 758
HpyF3I	CTNAG	3 cut(s)	74, 337, 923
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	4 cut(s)	687, 696, 743, 827
Lsp1109I	GCAGC	3 cut(s)	247, 747, 764
LweI	GCATC	1 cut(s)	925
MaeIII	GTNAC	1 cut(s)	510
MalI	GATC	6 cut(s)	153, 639, 807, 813, 858, 876
MboI	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
MboII	GAAGA	7 cut(s)	65, 146, 194, 343, 449, 667, 708
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	361, 672, 701
MluCI	AATT	5 cut(s)	138, 161, 318, 474, 489
MlyI	GAGTC	2 cut(s)	518, 551
MmeI	TCCRAC	4 cut(s)	68, 606, 765, 783
MnlI	CCTC	4 cut(s)	33, 83, 140, 321
Mph1103I	ATGCAT	1 cut(s)	763
MseI	TTAA	3 cut(s)	317, 492, 588
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	3 cut(s)	27, 656, 929
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	3 cut(s)	27, 656, 929
MwoI	GCNNNNNNNGC	2 cut(s)	260, 758
NcoI	CCATGG	2 cut(s)	146, 747
NdeII	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
NlaIV	GGNNCC	3 cut(s)	597, 660, 698
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	962
PciI	ACATGT	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	900
PfeI	GAWTC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	262, 737, 754
PleI	GAGTC	2 cut(s)	517, 551
PpsI	GAGTC	2 cut(s)	517, 551
PscI	ACATGT	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	588
Psp6I	CCWGG	3 cut(s)	25, 654, 927
PspFI	CCCAGC	1 cut(s)	444
PspGI	CCWGG	3 cut(s)	25, 654, 927
PspN4I	GGNNCC	3 cut(s)	597, 660, 698
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	590
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	317, 492, 588
SatI	GCNGC	3 cut(s)	261, 736, 753
Sau3AI	GATC	6 cut(s)	151, 637, 805, 811, 856, 874
SchI	GAGTC	2 cut(s)	518, 551
ScrFI	CCNGG	3 cut(s)	27, 656, 929
SduI	GDGCHC	3 cut(s)	361, 672, 701
SfaNI	GCATC	1 cut(s)	925
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	5 cut(s)	138, 161, 318, 474, 489
SsiI	CCGC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	25, 654, 927
StyI	CCWWGG	2 cut(s)	146, 747
TaaI	ACNGT	2 cut(s)	401, 848
TaqI	TCGA	1 cut(s)	241
TaqII	GACCGA	1 cut(s)	899
TasI	AATT	5 cut(s)	138, 161, 318, 474, 489
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	3 cut(s)	317, 492, 588
Tru9I	TTAA	3 cut(s)	317, 492, 588
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	3 cut(s)	260, 735, 752
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	5 cut(s)	17, 66, 429, 532, 812
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	533
VspI	ATTAAT	1 cut(s)	588
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.