Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

62300365 .. 62301406

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG394700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCATGAATACCGCCTTGAAACTGATGAAAATGGAGCTCCCCAGGCAAAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAAACTCCCAAGCATGCGAAGGATGAGTGAACACGAATCCCCTTGTTGGTACGATGAGCATGTCTCCTTCATGCCAGACTTGGATTCACCAAACCACAACAACTCCAACAGCTCCATCAATAATCAGATGGCATACCATGGTCACTTTCCTAACTATCCTTGCAAGAAAGAGCTGGATCACTTGCCATTTCAGCACCATGTTCCGAACGAGCACTTCTTCCAGCTCCCGCTTCTAGACAGCCCGAAACTACTACTTCAATCTTCAGCCAATGCTGCTGTGAGTTCAAACTCTATGACAGCGGCTGCATATAGCATTGACATTAACCAGAACTTTCATGCAGTGTATGGTAATAGCAGCAATGAGCTGCAAGCTGTAGATGATGATCAACTAACCGATTGGCGAGTGCTTGACAAGTTTGTAGCTTCACAACTCAGCCAGGATGATGTTTCAAAGGGAAATAGCTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

183

Amino Acids

20.87

Weight (kDa)

5.56

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	13, 308, 380
AclWI	GGATC	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgsI	TTSAA	5 cut(s)	20, 76, 338, 366, 531
AjnI	CCWGG	2 cut(s)	42, 516
AluBI	AGCT	8 cut(s)	38, 192, 253, 304, 445, 452, 503, 543
AluI	AGCT	8 cut(s)	38, 192, 253, 304, 445, 452, 503, 543
Alw21I	GWGCWC	2 cut(s)	40, 294
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	383
ApeKI	GCWGC	4 cut(s)	353, 383, 435, 445
AsuHPI	GGTGA	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	40, 294
BbvI	GCAGC	4 cut(s)	340, 370, 432, 447
BccI	CCATC	3 cut(s)	48, 202, 203
BciT130I	CCWGG	2 cut(s)	44, 518
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	5 cut(s)	354, 381, 384, 436, 446
BlsI	GCNGC	5 cut(s)	355, 382, 385, 437, 447
Bme1390I	CCNGG	2 cut(s)	44, 518
BmrFI	CCNGG	2 cut(s)	44, 518
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	42, 217
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	445
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	44, 518
BseDI	CCNNGG	2 cut(s)	42, 217
BseGI	GGATG	3 cut(s)	59, 108, 526
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	526
BseXI	GCAGC	4 cut(s)	340, 370, 432, 447
BsiHKAI	GWGCWC	2 cut(s)	40, 294
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	40, 294
Bsp143I	GATC	2 cut(s)	256, 463
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	3 cut(s)	13, 308, 380
BspCNI	CTCAG	1 cut(s)	525
BspHI	TCATGA	1 cut(s)	548
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	42, 217
BssMI	GATC	2 cut(s)	256, 463
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	44, 518
BstC8I	GCNNGC	2 cut(s)	95, 450
BstDEI	CTNAG	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	59, 108, 526
BstKTI	GATC	2 cut(s)	259, 466
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	2 cut(s)	256, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 271, 353
BstNI	CCWGG	2 cut(s)	44, 518
BstNSI	RCATGY	2 cut(s)	97, 143
BstSCI	CCNGG	2 cut(s)	42, 516
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	4 cut(s)	340, 370, 432, 447
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	3 cut(s)	59, 108, 526
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	95, 450
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	8 cut(s)	5, 94, 140, 151, 218, 278, 416, 549
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	2 cut(s)	258, 465
DpnII	GATC	2 cut(s)	256, 463
Ecl136II	GAGCTC	1 cut(s)	38
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	40
Eco53kI	GAGCTC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	38
EcoRII	CCWGG	2 cut(s)	42, 516
EcoT14I	CCWWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	8 cut(s)	8, 97, 143, 154, 221, 281, 419, 552
FatI	CATG	8 cut(s)	4, 93, 139, 150, 217, 277, 415, 548
FauI	CCCGC	1 cut(s)	315
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	5 cut(s)	354, 381, 384, 436, 446
FokI	GGATG	3 cut(s)	66, 115, 533
FriOI	GRGCYC	1 cut(s)	40
Fsp4HI	GCNGC	5 cut(s)	354, 381, 384, 436, 446
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	5 cut(s)	354, 381, 384, 436, 446
Hin1II	CATG	8 cut(s)	8, 97, 143, 154, 221, 281, 419, 552
HinfI	GANTC	2 cut(s)	116, 164
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	207, 285
Hpy188III	TCNNGA	3 cut(s)	76, 314, 549
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	93, 157
HpyCH4V	TGCA	5 cut(s)	4, 243, 386, 419, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 271, 353
HpyF3I	CTNAG	1 cut(s)	512
Hsp92II	CATG	8 cut(s)	8, 97, 143, 154, 221, 281, 419, 552
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	2 cut(s)	256, 463
LmnI	GCTCC	4 cut(s)	35, 43, 197, 309
LpnPI	CCDG	8 cut(s)	29, 56, 168, 239, 314, 419, 503, 530
Lsp1109I	GCAGC	4 cut(s)	340, 370, 432, 447
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	258, 465
MboI	GATC	2 cut(s)	256, 463
MboII	GAAGA	3 cut(s)	91, 289, 333
MhlI	GDGCHC	2 cut(s)	40, 294
MmeI	TCCRAC	1 cut(s)	210
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	44, 518
MvaI	CCWGG	2 cut(s)	44, 518
MwoI	GCNNNNNNNGC	3 cut(s)	44, 271, 353
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	2 cut(s)	256, 463
NlaIII	CATG	8 cut(s)	8, 97, 143, 154, 221, 281, 419, 552
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	97, 143
PaeI	GCATGC	1 cut(s)	97
PagI	TCATGA	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	116, 164
PkrI	GCNGC	5 cut(s)	355, 382, 385, 437, 447
Psp124BI	GAGCTC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	42, 516
PspGI	CCWGG	2 cut(s)	42, 516
PstNI	CAGNNNCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	5 cut(s)	354, 381, 384, 436, 446
Sau3AI	GATC	2 cut(s)	256, 463
ScrFI	CCNGG	2 cut(s)	44, 518
SduI	GDGCHC	2 cut(s)	40, 294
SetI	ASST	8 cut(s)	40, 194, 255, 306, 447, 454, 505, 545
SfcI	CTRYAG	1 cut(s)	453
SphI	GCATGC	1 cut(s)	97
SsiI	CCGC	3 cut(s)	13, 308, 380
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	42, 516
StyI	CCWWGG	1 cut(s)	217
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	116, 164
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	4 cut(s)	353, 383, 435, 445
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	5 cut(s)	21, 42, 139, 404, 537
TspRI	CASTG	1 cut(s)	426
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	2 cut(s)	97, 143
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.