Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016861.1

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

10575 .. 14364

Gene Structure 3790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016861.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggaggggatggaaatggtagggactaggaatggagacgaagttgatgatagggcccccatgcctcatctgtgcaactattgcagggaagacttacaaggccatggaggggatggaaatggactgaacagcgagaagctggataacatgaacacattctcacacgttccccccggtttccggttccatccgactgatgaagaactcgttgattactaccttaggaagaaggttactgcaagaaggattgaccttgatgttatcaaagatgtcgacctctataaaattgagccatgggatctccaagaattatgcaggatagggactgaggagcaaagtgactggtactttttcagccataaagacaagaagtatccaactggaactcgaacaaatagagcaactgcagctgggttctggaaagccaccggaagggacaaggccatttatgcaaagcatgacttaattgggatgaggaagaccttggtgttttacaaaggtcgagccccaaatggacaaaagtcggattggattatgcatgaataccgccttgaaactgatgaaaatggagctccccaggaagaaggatgggttgtgtgtagggttttcaagaagaaactcccaagcatgcgaaggatgagtgaacacgaatccccttgttggtacgatgagcatgtctccttcatgccagacttggattcaccaaaccacaacaactccaacagctccatcaataatcagatggcataccatggtcactttcctaactatccttgcaagaaagagctggatcacttgccatttcagcaccatgttccgaacgagcacttcttccagctccctcttctagacagcccgaaactactacttcaatcttcagccaatgctgctgtgagttcaaactctatgacagcggctgcatatagcattgacattaaccagaactttcatgcagtgtatggtaatagcagcaatgagctgcaagctgtagatgatgatcaactaaccgattggcgagtgcttgacaagtttgtagcttcacaactcagccaggatgatgtttcaaagggaaatagctattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

361

Amino Acids

41.49

Weight (kDa)

5.62

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	2 cut(s)	547, 914
AclWI	GGATC	2 cut(s)	306, 798
AcuI	CTGAAG	1 cut(s)	861
AfaI	GTAC	2 cut(s)	347, 665
AfiI	CCNNNNNNNGG	4 cut(s)	109, 180, 432, 660
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	5 cut(s)	554, 610, 872, 900, 1065
AjnI	CCWGG	2 cut(s)	576, 1050
Alw21I	GWGCWC	2 cut(s)	574, 828
Alw26I	GTCTC	2 cut(s)	30, 682
AlwI	GGATC	2 cut(s)	306, 798
AlwNI	CAGNNNCTG	1 cut(s)	917
AoxI	GGCC	3 cut(s)	54, 100, 441
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	5 cut(s)	407, 887, 917, 969, 979
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	54, 55
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	693
AxyI	CCTNAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	58
BanII	GRGCYC	3 cut(s)	58, 508, 574
BbsI	GAAGAC	2 cut(s)	96, 485
Bbv12I	GWGCWC	2 cut(s)	574, 828
BbvI	GCAGC	5 cut(s)	419, 874, 904, 966, 981
BccI	CCATC	6 cut(s)	4, 107, 195, 582, 736, 737
BciT130I	CCWGG	2 cut(s)	578, 1052
BciVI	GTATCC	1 cut(s)	384
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	30, 682
BfaI	CTAG	2 cut(s)	27, 848
BfmI	CTRYAG	2 cut(s)	405, 987
BfuI	GTATCC	1 cut(s)	384
BisI	GCNGC	6 cut(s)	408, 888, 915, 918, 970, 980
BlsI	GCNGC	6 cut(s)	409, 889, 916, 919, 971, 981
Bme1390I	CCNGG	3 cut(s)	174, 578, 1052
BmgT120I	GGNCC	2 cut(s)	54, 55
BmiI	GGNNCC	3 cut(s)	56, 57, 185
BmrFI	CCNGG	3 cut(s)	174, 578, 1052
BoxI	GACNNNNGTC	1 cut(s)	520
BpiI	GAAGAC	2 cut(s)	96, 485
BplI	GAGNNNNNCTC	2 cut(s)	662, 694
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	996
BsaJI	CCNNGG	6 cut(s)	103, 172, 293, 483, 576, 751
BsaWI	WCCGGW	2 cut(s)	180, 428
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 701, 731
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 180, 432, 660
Bse1I	ACTGG	2 cut(s)	347, 385
Bse21I	CCTNAGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	979
Bse8I	GATNNNNATC	1 cut(s)	996
BseBI	CCWGG	2 cut(s)	578, 1052
BseDI	CCNNGG	6 cut(s)	103, 172, 293, 483, 576, 751
BseGI	GGATG	7 cut(s)	15, 118, 187, 477, 593, 642, 1060
BseJI	GATNNNNATC	1 cut(s)	996
BseLI	CCNNNNNNNGG	4 cut(s)	109, 180, 432, 660
BseMI	GCAATG	1 cut(s)	979
BseMII	CTCAG	2 cut(s)	318, 1060
BseNI	ACTGG	2 cut(s)	347, 385
BseRI	GAGGAG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	5 cut(s)	419, 874, 904, 966, 981
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	3 cut(s)	56, 102, 443
BsiHKAI	GWGCWC	2 cut(s)	574, 828
BsiSI	CCGG	3 cut(s)	174, 181, 429
BslFI	GGGAC	3 cut(s)	37, 337, 449
BslI	CCNNNNNNNGG	4 cut(s)	109, 180, 432, 660
BsmAI	GTCTC	2 cut(s)	30, 682
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	3 cut(s)	37, 337, 449
BsnI	GGCC	3 cut(s)	56, 102, 443
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	4 cut(s)	58, 508, 574, 828
Bsp143I	GATC	3 cut(s)	298, 790, 997
Bsp19I	CCATGG	3 cut(s)	103, 293, 751
BspACI	CCGC	2 cut(s)	547, 914
BspANI	GGCC	3 cut(s)	56, 102, 443
BspCNI	CTCAG	2 cut(s)	319, 1059
BspHI	TCATGA	1 cut(s)	1082
BspLI	GGNNCC	3 cut(s)	56, 57, 185
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	2 cut(s)	306, 798
BsrDI	GCAATG	1 cut(s)	979
BsrI	ACTGG	2 cut(s)	347, 385
BssECI	CCNNGG	6 cut(s)	103, 172, 293, 483, 576, 751
BssMI	GATC	3 cut(s)	298, 790, 997
BssT1I	CCWWGG	4 cut(s)	103, 293, 483, 751
Bst2UI	CCWGG	2 cut(s)	578, 1052
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	629, 984
BstDEI	CTNAG	3 cut(s)	221, 327, 1046
BstDSI	CCRYGG	3 cut(s)	103, 293, 751
BstF5I	GGATG	7 cut(s)	15, 118, 187, 477, 593, 642, 1060
BstKTI	GATC	3 cut(s)	301, 793, 1000
BstMAI	GTCTC	2 cut(s)	30, 682
BstMBI	GATC	3 cut(s)	298, 790, 997
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 407, 449, 805, 887
BstNI	CCWGG	2 cut(s)	578, 1052
BstNSI	RCATGY	2 cut(s)	631, 677
BstPAI	GACNNNNGTC	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	172, 576, 1050
BstSFI	CTRYAG	2 cut(s)	405, 987
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	5 cut(s)	419, 874, 904, 966, 981
BstV2I	GAAGAC	2 cut(s)	96, 485
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
Bsu36I	CCTNAGG	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	3 cut(s)	56, 102, 443
BtgI	CCRYGG	3 cut(s)	103, 293, 751
BtsCI	GGATG	7 cut(s)	15, 118, 187, 477, 593, 642, 1060
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	1 cut(s)	960
Cac8I	GCNNGC	2 cut(s)	629, 984
CaiI	CAGNNNCTG	1 cut(s)	917
CciI	TCATGA	1 cut(s)	1082
Cfr13I	GGNCC	2 cut(s)	54, 55
Csp6I	GTAC	2 cut(s)	346, 664
CviQI	GTAC	2 cut(s)	346, 664
DdeI	CTNAG	3 cut(s)	221, 327, 1046
DpnI	GATC	3 cut(s)	300, 792, 999
DpnII	GATC	3 cut(s)	298, 790, 997
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Ecl136II	GAGCTC	1 cut(s)	572
Eco130I	CCWWGG	4 cut(s)	103, 293, 483, 751
Eco24I	GRGCYC	3 cut(s)	58, 508, 574
Eco53kI	GAGCTC	1 cut(s)	572
Eco57I	CTGAAG	1 cut(s)	861
Eco81I	CCTNAGG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	572
EcoO109I	RGGNCCY	2 cut(s)	54, 55
EcoRII	CCWGG	2 cut(s)	576, 1050
EcoT14I	CCWWGG	4 cut(s)	103, 293, 483, 751
EcoT22I	ATGCAT	1 cut(s)	540
EcoT38I	GRGCYC	3 cut(s)	58, 508, 574
ErhI	CCWWGG	4 cut(s)	103, 293, 483, 751
Esp3I	CGTCTC	1 cut(s)	30
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	3 cut(s)	37, 337, 449
FbaI	TGATCA	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	408, 888, 915, 918, 970, 980
FokI	GGATG	7 cut(s)	22, 125, 174, 484, 600, 649, 1067
FriOI	GRGCYC	3 cut(s)	58, 508, 574
Fsp4HI	GCNGC	6 cut(s)	408, 888, 915, 918, 970, 980
FspBI	CTAG	2 cut(s)	27, 848
GluI	GCNGC	6 cut(s)	408, 888, 915, 918, 970, 980
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	56, 102, 443
HapII	CCGG	3 cut(s)	174, 181, 429
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	650, 698
HpaII	CCGG	3 cut(s)	174, 181, 429
HphI	GGTGA	1 cut(s)	693
Hpy166II	GTNNAC	2 cut(s)	274, 644
Hpy188I	TCNGA	4 cut(s)	192, 526, 741, 819
Hpy188III	TCNNGA	4 cut(s)	418, 610, 848, 1083
Hpy8I	GTNNAC	2 cut(s)	274, 644
HpyAV	CCTTC	6 cut(s)	223, 237, 426, 578, 627, 691
HpyCH4IV	ACGT	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 407, 449, 805, 887
HpyF3I	CTNAG	3 cut(s)	221, 327, 1046
HpySE526I	ACGT	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	3 cut(s)	298, 790, 997
LmnI	GCTCC	5 cut(s)	331, 569, 577, 731, 843
Lsp1109I	GCAGC	5 cut(s)	419, 874, 904, 966, 981
MaeI	CTAG	2 cut(s)	27, 848
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	3 cut(s)	232, 338, 755
MalI	GATC	3 cut(s)	300, 792, 999
MboI	GATC	3 cut(s)	298, 790, 997
MboII	GAAGA	9 cut(s)	101, 212, 238, 490, 593, 625, 823, 836, 867
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	4 cut(s)	58, 508, 574, 828
MluCI	AATT	3 cut(s)	285, 308, 465
MmeI	TCCRAC	4 cut(s)	215, 401, 504, 744
MnlI	CCTC	6 cut(s)	75, 101, 287, 322, 468, 852
Mph1103I	ATGCAT	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	2 cut(s)	464, 936
MspA1I	CMGCKG	2 cut(s)	410, 914
MspI	CCGG	3 cut(s)	174, 181, 429
MspR9I	CCNGG	3 cut(s)	174, 578, 1052
MvaI	CCWGG	2 cut(s)	578, 1052
MwoI	GCNNNNNNNGC	5 cut(s)	81, 407, 449, 805, 887
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	3 cut(s)	103, 293, 751
NdeII	GATC	3 cut(s)	298, 790, 997
NlaIV	GGNNCC	3 cut(s)	56, 57, 185
NmuCI	GTSAC	2 cut(s)	338, 755
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	2 cut(s)	631, 677
PaeI	GCATGC	1 cut(s)	631
PagI	TCATGA	1 cut(s)	1082
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	650, 698
PkrI	GCNGC	6 cut(s)	409, 889, 916, 919, 971, 981
PshAI	GACNNNNGTC	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	574
Psp6I	CCWGG	2 cut(s)	576, 1050
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	2 cut(s)	576, 1050
PspN4I	GGNNCC	3 cut(s)	56, 57, 185
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	54, 55
PstI	CTGCAG	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	2 cut(s)	347, 665
RsaNI	GTAC	2 cut(s)	346, 664
SacI	GAGCTC	1 cut(s)	574
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	464, 936
SatI	GCNGC	6 cut(s)	408, 888, 915, 918, 970, 980
Sau3AI	GATC	3 cut(s)	298, 790, 997
Sau96I	GGNCC	2 cut(s)	54, 55
ScrFI	CCNGG	3 cut(s)	174, 578, 1052
SduI	GDGCHC	4 cut(s)	58, 508, 574, 828
SfcI	CTRYAG	2 cut(s)	405, 987
SphI	GCATGC	1 cut(s)	631
Sse9I	AATT	3 cut(s)	285, 308, 465
SsiI	CCGC	2 cut(s)	547, 914
SspMI	CTAG	2 cut(s)	27, 848
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	3 cut(s)	172, 576, 1050
StyI	CCWWGG	4 cut(s)	103, 293, 483, 751
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	3 cut(s)	273, 388, 502
TasI	AATT	3 cut(s)	285, 308, 465
TauI	GCSGC	1 cut(s)	917
TfiI	GAWTC	2 cut(s)	650, 698
Tru1I	TTAA	2 cut(s)	464, 936
Tru9I	TTAA	2 cut(s)	464, 936
TscAI	CASTG	1 cut(s)	960
TseFI	GTSAC	2 cut(s)	338, 755
TseI	GCWGC	5 cut(s)	407, 887, 917, 969, 979
Tsp45I	GTSAC	2 cut(s)	338, 755
TspDTI	ATGAA	7 cut(s)	164, 213, 555, 576, 673, 938, 1071
TspRI	CASTG	1 cut(s)	960
XbaI	TCTAGA	1 cut(s)	847
XceI	RCATGY	2 cut(s)	631, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	27, 848
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.