FvH4_7g27750
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007003
Physical Location & Seq
Reverse (-)
20689307 .. 20692872
3566 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27750.t1

Sequence Viewer

Length: 942 bp
ATGAACACATTCTCACATGTTCCCCCTGGTTTCCGGTTCCATCCGACTGATGAAGAACTAGTTGATTACTACCTTAGGAAGAAGGTTACTGCAAGAAGGATTGACCTTGATGTCATCAAAGATGTCGACCTCTATAAAATTGAGCCATGGGATCTCCAAGAATTATGCAGGATAGGAACTGACGAGCAAAGTGACTGGTACTTCTTCAGCCATAAAGACAAGAAGTATCCAACTGGAACTAGAACAAATAGAGCCACTGCAGCTGGGTTCTGGAAAGCCACTGGAAGGGACAAGGCCATTTATGCAAAGCATGACTTAATTGGGATGAGGAAGACCTTGGTGTTCTACAAAGGTCGAGCCCCAAATGGACAAAAATCAGATTGGATTATGCATGAATATCGCCTTGAAACCGATGAAAATGGAGCTCCCCAGGCAAAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAAACTCCCAAGCATGCGAAGAATGAGTGAACACGAATCCCCTTGTTGGTACGATGAGCATGTCTCCTTCATGCCAGACTTGGATTCACCAAACCACAACAACTCCAACAGCTCCATGAATAATCAGATGGCATACCATGGCCACTTTCCTAACTATCCTTGCAAGAAGGAGTTAGATCACTTGCCATTTCAGCACCATGTTCCGAATGAGCACTTCTTCCAGCTCCCGCTTCTAGACAGTCCTAAACTACTACTTCAATCTTCATCTAGTGCTGCTGTGAGTTCAAACTCTATGACAGCGGCTGCTGCATATAGCATTGACATTAACCAAAACTTTCATGCAGTCTATGGTAACAACAGCAATGAGCTACAAGCTGTAGATGATGATCAACTGACCGATTGGCGAGTGCTTGACAAGTTTGTAGCTTCACAACTCAGCCAGGATGATGTTTCAAAGGGAAATAGCTATTCATGA

Protein Analysis

314

Amino Acids

36.16

Weight (kDa)

6.42

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 135 5.2e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 695, 767
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 190
AfaI GTAC 2 cut(s) 200, 518
AfiI CCNNNNNNNGG 2 cut(s) 285, 513
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 5 cut(s) 407, 463, 725, 753, 921
AhlI ACTAGT 1 cut(s) 58
AjnI CCWGG 3 cut(s) 25, 429, 906
AluBI AGCT 8 cut(s) 263, 425, 579, 691, 835, 842, 893, 933
AluI AGCT 8 cut(s) 263, 425, 579, 691, 835, 842, 893, 933
Alw21I GWGCWC 2 cut(s) 427, 681
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 2 cut(s) 294, 607
ApeKI GCWGC 4 cut(s) 260, 740, 770, 773
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 546
AxyI CCTNAGG 1 cut(s) 74
BalI TGGCCA 1 cut(s) 609
BanII GRGCYC 2 cut(s) 361, 427
BbsI GAAGAC 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 427, 681
BbvI GCAGC 4 cut(s) 272, 727, 757, 760
BccI CCATC 3 cut(s) 48, 435, 589
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 3 cut(s) 27, 431, 908
BciVI GTATCC 1 cut(s) 237
BclI TGATCA 1 cut(s) 853
BcoDI GTCTC 1 cut(s) 535
BcuI ACTAGT 1 cut(s) 58
BfaI CTAG 4 cut(s) 59, 240, 701, 735
BfmI CTRYAG 2 cut(s) 258, 843
BfuI GTATCC 1 cut(s) 237
BisI GCNGC 5 cut(s) 261, 741, 768, 771, 774
BlsI GCNGC 5 cut(s) 262, 742, 769, 772, 775
Bme1390I CCNGG 3 cut(s) 27, 431, 908
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 3 cut(s) 27, 431, 908
BpiI GAAGAC 1 cut(s) 338
BplI GAGNNNNNCTC 2 cut(s) 515, 547
BsaBI GATNNNNATC 1 cut(s) 852
BsaJI CCNNGG 5 cut(s) 25, 146, 336, 429, 604
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 513
Bse1I ACTGG 3 cut(s) 200, 238, 286
Bse21I CCTNAGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 835
Bse8I GATNNNNATC 1 cut(s) 852
BseBI CCWGG 3 cut(s) 27, 431, 908
BseDI CCNNGG 5 cut(s) 25, 146, 336, 429, 604
BseGI GGATG 4 cut(s) 40, 330, 446, 916
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 2 cut(s) 285, 513
BseMI GCAATG 1 cut(s) 835
BseMII CTCAG 1 cut(s) 916
BseNI ACTGG 3 cut(s) 200, 238, 286
BseXI GCAGC 4 cut(s) 272, 727, 757, 760
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 2 cut(s) 296, 609
BsiHKAI GWGCWC 2 cut(s) 427, 681
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 285, 513
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 296, 609
Bsp1286I GDGCHC 3 cut(s) 361, 427, 681
Bsp143I GATC 3 cut(s) 151, 643, 853
Bsp19I CCATGG 2 cut(s) 146, 604
BspACI CCGC 2 cut(s) 695, 767
BspANI GGCC 2 cut(s) 296, 609
BspCNI CTCAG 1 cut(s) 915
BspHI TCATGA 1 cut(s) 938
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 835
BsrI ACTGG 3 cut(s) 200, 238, 286
BssECI CCNNGG 5 cut(s) 25, 146, 336, 429, 604
BssMI GATC 3 cut(s) 151, 643, 853
BssT1I CCWWGG 3 cut(s) 146, 336, 604
Bst2UI CCWGG 3 cut(s) 27, 431, 908
Bst4CI ACNGT 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 2 cut(s) 74, 902
BstDSI CCRYGG 2 cut(s) 146, 604
BstF5I GGATG 4 cut(s) 40, 330, 446, 916
BstKTI GATC 3 cut(s) 154, 646, 856
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 3 cut(s) 151, 643, 853
BstMWI GCNNNNNNNGC 5 cut(s) 260, 302, 431, 658, 773
BstNI CCWGG 3 cut(s) 27, 431, 908
BstNSI RCATGY 3 cut(s) 20, 484, 530
BstSCI CCNGG 3 cut(s) 25, 429, 906
BstSFI CTRYAG 2 cut(s) 258, 843
BstV1I GCAGC 4 cut(s) 272, 727, 757, 760
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 74
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 2 cut(s) 296, 609
BtgI CCRYGG 2 cut(s) 146, 604
BtsCI GGATG 4 cut(s) 40, 330, 446, 916
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 279
Cac8I GCNNGC 1 cut(s) 482
CaiI CAGNNNCTG 1 cut(s) 770
CciI TCATGA 1 cut(s) 938
Csp6I GTAC 2 cut(s) 199, 517
CviQI GTAC 2 cut(s) 199, 517
DdeI CTNAG 2 cut(s) 74, 902
DpnI GATC 3 cut(s) 153, 645, 855
DpnII GATC 3 cut(s) 151, 643, 853
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 607
Ecl136II GAGCTC 1 cut(s) 425
Eco130I CCWWGG 3 cut(s) 146, 336, 604
Eco24I GRGCYC 2 cut(s) 361, 427
Eco53kI GAGCTC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 425
EcoRII CCWGG 3 cut(s) 25, 429, 906
EcoT14I CCWWGG 3 cut(s) 146, 336, 604
EcoT22I ATGCAT 1 cut(s) 393
EcoT38I GRGCYC 2 cut(s) 361, 427
ErhI CCWWGG 3 cut(s) 146, 336, 604
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FaqI GGGAC 1 cut(s) 302
FauI CCCGC 1 cut(s) 702
FbaI TGATCA 1 cut(s) 853
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 5 cut(s) 261, 741, 768, 771, 774
FokI GGATG 4 cut(s) 27, 337, 453, 923
FriOI GRGCYC 2 cut(s) 361, 427
Fsp4HI GCNGC 5 cut(s) 261, 741, 768, 771, 774
FspBI CTAG 4 cut(s) 59, 240, 701, 735
GluI GCNGC 5 cut(s) 261, 741, 768, 771, 774
GsaI CCCAGC 1 cut(s) 267
HaeIII GGCC 2 cut(s) 296, 609
HapII CCGG 1 cut(s) 34
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 2 cut(s) 503, 551
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 546
Hpy166II GTNNAC 2 cut(s) 127, 497
Hpy188I TCNGA 4 cut(s) 45, 379, 594, 672
Hpy188III TCNNGA 4 cut(s) 271, 463, 701, 939
Hpy8I GTNNAC 2 cut(s) 127, 497
HpyAV CCTTC 5 cut(s) 76, 90, 279, 544, 628
HpyCH4III ACNGT 1 cut(s) 707
HpyCH4V TGCA 8 cut(s) 92, 168, 260, 305, 391, 630, 776, 809
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 302, 431, 658, 773
HpyF3I CTNAG 2 cut(s) 74, 902
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 3 cut(s) 151, 643, 853
LmnI GCTCC 4 cut(s) 422, 430, 584, 696
Lsp1109I GCAGC 4 cut(s) 272, 727, 757, 760
MaeI CTAG 4 cut(s) 59, 240, 701, 735
MaeIII GTNAC 3 cut(s) 85, 191, 818
MalI GATC 3 cut(s) 153, 645, 855
MboI GATC 3 cut(s) 151, 643, 853
MboII GAAGA 8 cut(s) 65, 91, 196, 343, 478, 498, 676, 720
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 3 cut(s) 361, 427, 681
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 3 cut(s) 138, 161, 318
MluNI TGGCCA 1 cut(s) 609
MmeI TCCRAC 3 cut(s) 68, 254, 597
MnlI CCTC 2 cut(s) 140, 321
Mox20I TGGCCA 1 cut(s) 609
Mph1103I ATGCAT 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 609
MseI TTAA 2 cut(s) 317, 792
Msp20I TGGCCA 1 cut(s) 609
MspA1I CMGCKG 2 cut(s) 263, 767
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 3 cut(s) 27, 431, 908
MvaI CCWGG 3 cut(s) 27, 431, 908
MwoI GCNNNNNNNGC 5 cut(s) 260, 302, 431, 658, 773
NcoI CCATGG 2 cut(s) 146, 604
NdeII GATC 3 cut(s) 151, 643, 853
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 3 cut(s) 20, 484, 530
PaeI GCATGC 1 cut(s) 484
PagI TCATGA 1 cut(s) 938
PciI ACATGT 1 cut(s) 16
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 503, 551
PkrI GCNGC 5 cut(s) 262, 742, 769, 772, 775
PscI ACATGT 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 3 cut(s) 25, 429, 906
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 3 cut(s) 25, 429, 906
PspN4I GGNNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 200, 518
RsaNI GTAC 2 cut(s) 199, 517
SacI GAGCTC 1 cut(s) 427
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 317, 792
SatI GCNGC 5 cut(s) 261, 741, 768, 771, 774
Sau3AI GATC 3 cut(s) 151, 643, 853
ScrFI CCNGG 3 cut(s) 27, 431, 908
SduI GDGCHC 3 cut(s) 361, 427, 681
SfcI CTRYAG 2 cut(s) 258, 843
SpeI ACTAGT 1 cut(s) 58
SphI GCATGC 1 cut(s) 484
Sse9I AATT 3 cut(s) 138, 161, 318
SsiI CCGC 2 cut(s) 695, 767
SspMI CTAG 4 cut(s) 59, 240, 701, 735
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 3 cut(s) 25, 429, 906
StyI CCWWGG 3 cut(s) 146, 336, 604
TaaI ACNGT 1 cut(s) 707
TaqI TCGA 2 cut(s) 126, 355
TaqII GACCGA 1 cut(s) 878
TasI AATT 3 cut(s) 138, 161, 318
TauI GCSGC 1 cut(s) 770
TfiI GAWTC 2 cut(s) 503, 551
Tru1I TTAA 2 cut(s) 317, 792
Tru9I TTAA 2 cut(s) 317, 792
TscAI CASTG 2 cut(s) 262, 286
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 4 cut(s) 260, 740, 770, 773
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 9 cut(s) 17, 66, 408, 429, 526, 599, 720, 794, 927
TspRI CASTG 2 cut(s) 262, 286
XbaI TCTAGA 1 cut(s) 700
XceI RCATGY 3 cut(s) 20, 484, 530
XmiI GTMKAC 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 59, 240, 701, 735
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.