RLG00000026730
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007003
Physical Location & Seq
Forward (+)
5369989 .. 5374878
4890 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026730

Sequence Viewer

Length: 1170 bp
ATGGGACCTACAATAGCCCGTTTGGGACAGCGCTCGCGCGACATCCTTGGCCAAAGCTTTTTTGGGGACCTGAAAACCAAGTGCGGGCGCAGGTTCAATTCCCGAGGGAGGGAAGAGTTTATCAGAAGCCACAAGCATAAACAAAGAACGAGACTGAACAGCGAGAAGCTAGATAACATGAACACATTCTCACACGTTCCCCCTGGTTTCCGTTTCCATCCGACTGATGAAGAACTCGTTGATTACTACCTTAGGAAGAAGGTTACTGCAAGAAGGATTGACCTTGATGTTATCAAAGATGTCGACCTCTATAAAATTGAGCCATGGGATCTCCAAGAATTATGCAGGATAGGGACTGAGGAGCAAAGTGACTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACTGGAACTCGAACAAATAGAGCAACTGCAGCTGGGTTCTGGAAAGCCACCGGAAGGGACAAGGCCATTTATGCAAAGCATGACTTAATTGGGATGAGGAAGACCTTGGTGTTTTACAAAGGTCGAGCCCCAAATGGACAAAAGTCGGATTGGATTATGCATGAATACCGCCTTGAAACTGATGAAAATGGAGCACCCCAGGCAAGTATAATCACACTAATGAATTTCTTGCATTGTTCAACTTCAAATGCTCATGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAAACTCCCAAGCATGCGAAGGATGAGTGAACACGAATCCCCTTGTTGGTACGATGAGCATGTCTCCTTCATGCCAGACTTGGATTCACCAAACCACAACAACTCCAACAGCTCCATCAATAATCAGATGGCATACCATGGTCACTTTCCTAACTATCCTTGCAAGAAAGAGCTAGATCACTTGCCATTTCAGCACCATGTTCCGAACGAGCACTTCTTCCAGCTCCCGCTTCTAGACAGCCCGAAACTACTACTTCAATCTTCAGCCAATGCTGCTGTGAGTTCAAACTCTATGACCGCGGCTGCATATAGCATTGACATTAACCAGAACTTTCATGCAGTGTATGGTAATAACAGCAATGAGCTGCAGGCTGTAGATGATGATCAACTAACCGATTGGCGAGTGCTTGACAAGTTTGTAGCTTCACAACTCAGCCAGGATGATGTTTCAAAGGGAAATAGCTATTCATGA

Protein Analysis

390

Amino Acids

45.01

Weight (kDa)

8.12

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 67 - 194 8.4e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 303
AccII CGCG 3 cut(s) 37, 39, 998
AciI CCGC 5 cut(s) 84, 577, 926, 996, 998
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 945
AfaI GTAC 2 cut(s) 377, 749
AfeI AGCGCT 1 cut(s) 32
AfiI CCNNNNNNNGG 5 cut(s) 84, 108, 109, 462, 744
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 8 cut(s) 97, 584, 648, 654, 694, 956, 984, 1149
AjnI CCWGG 3 cut(s) 202, 606, 1134
AluBI AGCT 9 cut(s) 57, 169, 440, 810, 871, 922, 1063, 1121, 1161
AluI AGCT 9 cut(s) 57, 169, 440, 810, 871, 922, 1063, 1121, 1161
Alw21I GWGCWC 2 cut(s) 604, 912
Alw26I GTCTC 2 cut(s) 145, 766
AlwI GGATC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 102
Aor51HI AGCGCT 1 cut(s) 32
AoxI GGCC 2 cut(s) 49, 471
ApeKI GCWGC 4 cut(s) 437, 971, 1001, 1063
ApoI RAATTY 1 cut(s) 631
Asp700I GAANNNNTTC 1 cut(s) 185
AspLEI GCGC 3 cut(s) 33, 39, 90
AspS9I GGNCC 2 cut(s) 5, 67
AsuHPI GGTGA 1 cut(s) 777
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 2 cut(s) 5, 67
AxyI CCTNAGG 1 cut(s) 251
BalI TGGCCA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 515
Bbv12I GWGCWC 2 cut(s) 604, 912
BbvI GCAGC 4 cut(s) 449, 958, 988, 1050
BccI CCATC 4 cut(s) 225, 666, 820, 821
BciT130I CCWGG 3 cut(s) 204, 608, 1136
BciVI GTATCC 1 cut(s) 414
BclI TGATCA 1 cut(s) 1081
BcoDI GTCTC 2 cut(s) 145, 766
BfaI CTAG 3 cut(s) 170, 872, 932
BfmI CTRYAG 3 cut(s) 435, 1064, 1071
BfoI RGCGCY 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 81
BfuI GTATCC 1 cut(s) 414
BisI GCNGC 5 cut(s) 438, 972, 999, 1002, 1064
BlsI GCNGC 5 cut(s) 439, 973, 1000, 1003, 1065
Bme1390I CCNGG 3 cut(s) 204, 608, 1136
Bme18I GGWCC 2 cut(s) 5, 67
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 2 cut(s) 5, 67
BmiI GGNNCC 2 cut(s) 6, 68
BmrFI CCNGG 3 cut(s) 204, 608, 1136
BoxI GACNNNNGTC 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 515
BplI GAGNNNNNCTC 2 cut(s) 746, 778
BsaBI GATNNNNATC 1 cut(s) 1080
BsaJI CCNNGG 8 cut(s) 46, 103, 202, 323, 513, 606, 835, 996
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 785, 815
Bsc4I CCNNNNNNNGG 5 cut(s) 84, 108, 109, 462, 744
Bse1I ACTGG 2 cut(s) 377, 415
Bse21I CCTNAGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 1063
Bse8I GATNNNNATC 1 cut(s) 1080
BseBI CCWGG 3 cut(s) 204, 608, 1136
BseDI CCNNGG 8 cut(s) 46, 103, 202, 323, 513, 606, 835, 996
BseGI GGATG 6 cut(s) 42, 217, 507, 677, 726, 1144
BseJI GATNNNNATC 1 cut(s) 1080
BseLI CCNNNNNNNGG 5 cut(s) 84, 108, 109, 462, 744
BseMI GCAATG 1 cut(s) 1063
BseMII CTCAG 2 cut(s) 348, 1144
BseNI ACTGG 2 cut(s) 377, 415
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 4 cut(s) 449, 958, 988, 1050
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 3 cut(s) 37, 39, 998
BshFI GGCC 2 cut(s) 51, 473
BsiHKAI GWGCWC 2 cut(s) 604, 912
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 5 cut(s) 18, 39, 80, 367, 479
BslI CCNNNNNNNGG 5 cut(s) 84, 108, 109, 462, 744
BsmAI GTCTC 2 cut(s) 145, 766
BsmFI GGGAC 5 cut(s) 18, 39, 80, 367, 479
BsnI GGCC 2 cut(s) 51, 473
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 538, 604, 912
Bsp143I GATC 3 cut(s) 328, 874, 1081
Bsp19I CCATGG 2 cut(s) 323, 835
BspACI CCGC 5 cut(s) 84, 577, 926, 996, 998
BspANI GGCC 2 cut(s) 51, 473
BspCNI CTCAG 2 cut(s) 349, 1143
BspFNI CGCG 3 cut(s) 37, 39, 998
BspHI TCATGA 2 cut(s) 661, 1166
BspLI GGNNCC 2 cut(s) 6, 68
BspMAI CTGCAG 2 cut(s) 439, 1068
BspMI ACCTGC 1 cut(s) 81
BspPI GGATC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 1063
BsrI ACTGG 2 cut(s) 377, 415
BssECI CCNNGG 8 cut(s) 46, 103, 202, 323, 513, 606, 835, 996
BssMI GATC 3 cut(s) 328, 874, 1081
BssT1I CCWWGG 4 cut(s) 46, 323, 513, 835
Bst2UI CCWGG 3 cut(s) 204, 608, 1136
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 4 cut(s) 35, 86, 713, 1068
BstDEI CTNAG 3 cut(s) 251, 357, 1130
BstDSI CCRYGG 3 cut(s) 323, 835, 996
BstF5I GGATG 6 cut(s) 42, 217, 507, 677, 726, 1144
BstFNI CGCG 3 cut(s) 37, 39, 998
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 3 cut(s) 33, 39, 90
BstKTI GATC 3 cut(s) 331, 877, 1084
BstMAI GTCTC 2 cut(s) 145, 766
BstMBI GATC 3 cut(s) 328, 874, 1081
BstMWI GCNNNNNNNGC 5 cut(s) 437, 479, 608, 889, 971
BstNI CCWGG 3 cut(s) 204, 608, 1136
BstNSI RCATGY 2 cut(s) 715, 761
BstPAI GACNNNNGTC 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 202, 606, 1134
BstSFI CTRYAG 3 cut(s) 435, 1064, 1071
BstUI CGCG 3 cut(s) 37, 39, 998
BstV1I GCAGC 4 cut(s) 449, 958, 988, 1050
BstV2I GAAGAC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
Bsu36I CCTNAGG 1 cut(s) 251
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 2 cut(s) 51, 473
BtgI CCRYGG 3 cut(s) 323, 835, 996
BtsCI GGATG 6 cut(s) 42, 217, 507, 677, 726, 1144
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 1 cut(s) 1044
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 4 cut(s) 35, 86, 713, 1068
CciI TCATGA 2 cut(s) 661, 1166
CfoI GCGC 3 cut(s) 33, 39, 90
Cfr13I GGNCC 2 cut(s) 5, 67
Cfr42I CCGCGG 1 cut(s) 999
Csp6I GTAC 2 cut(s) 376, 748
CviQI GTAC 2 cut(s) 376, 748
DdeI CTNAG 3 cut(s) 251, 357, 1130
DpnI GATC 3 cut(s) 330, 876, 1083
DpnII GATC 3 cut(s) 328, 874, 1081
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 4 cut(s) 46, 323, 513, 835
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 5, 67
Eco47III AGCGCT 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 945
Eco81I CCTNAGG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 102
EcoO109I RGGNCCY 2 cut(s) 5, 67
EcoRII CCWGG 3 cut(s) 202, 606, 1134
EcoT14I CCWWGG 4 cut(s) 46, 323, 513, 835
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 4 cut(s) 46, 323, 513, 835
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 5 cut(s) 18, 39, 80, 367, 479
FauI CCCGC 2 cut(s) 77, 933
FbaI TGATCA 1 cut(s) 1081
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 5 cut(s) 438, 972, 999, 1002, 1064
FokI GGATG 6 cut(s) 29, 204, 514, 684, 733, 1151
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 5 cut(s) 438, 972, 999, 1002, 1064
FspBI CTAG 3 cut(s) 170, 872, 932
GlaI GCGC 3 cut(s) 32, 38, 89
GluI GCNGC 5 cut(s) 438, 972, 999, 1002, 1064
GsaI CCCAGC 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 2 cut(s) 51, 473
HapII CCGG 1 cut(s) 459
HhaI GCGC 3 cut(s) 33, 39, 90
Hin6I GCGC 3 cut(s) 31, 37, 88
HinP1I GCGC 3 cut(s) 31, 37, 88
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 2 cut(s) 734, 782
HpaII CCGG 1 cut(s) 459
HphI GGTGA 1 cut(s) 777
Hpy166II GTNNAC 2 cut(s) 304, 728
Hpy188I TCNGA 5 cut(s) 125, 222, 556, 825, 903
Hpy188III TCNNGA 6 cut(s) 102, 448, 662, 694, 932, 1167
Hpy8I GTNNAC 2 cut(s) 304, 728
HpyAV CCTTC 6 cut(s) 253, 267, 456, 662, 711, 775
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 5 cut(s) 437, 479, 608, 889, 971
HpyF3I CTNAG 3 cut(s) 251, 357, 1130
HpySE526I ACGT 1 cut(s) 195
HspAI GCGC 3 cut(s) 31, 37, 88
Ksp22I TGATCA 1 cut(s) 1081
KspI CCGCGG 1 cut(s) 999
Kzo9I GATC 3 cut(s) 328, 874, 1081
LmnI GCTCC 4 cut(s) 361, 599, 815, 927
Lsp1109I GCAGC 4 cut(s) 449, 958, 988, 1050
MaeI CTAG 3 cut(s) 170, 872, 932
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 262, 368, 839
MalI GATC 3 cut(s) 330, 876, 1083
MboI GATC 3 cut(s) 328, 874, 1081
MboII GAAGA 8 cut(s) 125, 242, 268, 520, 677, 709, 907, 951
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 3 cut(s) 538, 604, 912
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 5 cut(s) 97, 315, 338, 495, 631
MluNI TGGCCA 1 cut(s) 51
MmeI TCCRAC 4 cut(s) 245, 431, 534, 828
MnlI CCTC 5 cut(s) 98, 102, 317, 352, 498
Mox20I TGGCCA 1 cut(s) 51
Mph1103I ATGCAT 1 cut(s) 570
MroXI GAANNNNTTC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 494, 1020
MslI CAYNNNNRTG 1 cut(s) 626
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 440, 998
MspI CCGG 1 cut(s) 459
MspR9I CCNGG 3 cut(s) 204, 608, 1136
MvaI CCWGG 3 cut(s) 204, 608, 1136
MvnI CGCG 3 cut(s) 37, 39, 998
MwoI GCNNNNNNNGC 5 cut(s) 437, 479, 608, 889, 971
NcoI CCATGG 2 cut(s) 323, 835
NdeII GATC 3 cut(s) 328, 874, 1081
NlaIV GGNNCC 2 cut(s) 6, 68
NmuCI GTSAC 2 cut(s) 368, 839
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 715, 761
PaeI GCATGC 1 cut(s) 715
PagI TCATGA 2 cut(s) 661, 1166
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 2 cut(s) 734, 782
PkrI GCNGC 5 cut(s) 439, 973, 1000, 1003, 1065
PpuMI RGGWCCY 2 cut(s) 5, 67
PshAI GACNNNNGTC 1 cut(s) 550
Psp5II RGGWCCY 2 cut(s) 5, 67
Psp6I CCWGG 3 cut(s) 202, 606, 1134
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 3 cut(s) 202, 606, 1134
PspN4I GGNNCC 2 cut(s) 6, 68
PspPI GGNCC 2 cut(s) 5, 67
PspPPI RGGWCCY 2 cut(s) 5, 67
PstI CTGCAG 2 cut(s) 439, 1068
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 377, 749
RsaNI GTAC 2 cut(s) 376, 748
RseI CAYNNNNRTG 1 cut(s) 626
SacII CCGCGG 1 cut(s) 999
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 494, 1020
SatI GCNGC 5 cut(s) 438, 972, 999, 1002, 1064
Sau3AI GATC 3 cut(s) 328, 874, 1081
Sau96I GGNCC 2 cut(s) 5, 67
ScrFI CCNGG 3 cut(s) 204, 608, 1136
SduI GDGCHC 3 cut(s) 538, 604, 912
SfcI CTRYAG 3 cut(s) 435, 1064, 1071
Sfr303I CCGCGG 1 cut(s) 999
SgrBI CCGCGG 1 cut(s) 999
SinI GGWCC 2 cut(s) 5, 67
SmiMI CAYNNNNRTG 1 cut(s) 626
SphI GCATGC 1 cut(s) 715
Sse9I AATT 5 cut(s) 97, 315, 338, 495, 631
SsiI CCGC 5 cut(s) 84, 577, 926, 996, 998
SspMI CTAG 3 cut(s) 170, 872, 932
StyD4I CCNGG 3 cut(s) 202, 606, 1134
StyI CCWWGG 4 cut(s) 46, 323, 513, 835
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 303, 418, 532
TasI AATT 5 cut(s) 97, 315, 338, 495, 631
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 2 cut(s) 734, 782
Tru1I TTAA 2 cut(s) 494, 1020
Tru9I TTAA 2 cut(s) 494, 1020
TscAI CASTG 1 cut(s) 1044
TseFI GTSAC 2 cut(s) 368, 839
TseI GCWGC 4 cut(s) 437, 971, 1001, 1063
Tsp45I GTSAC 2 cut(s) 368, 839
TspDTI ATGAA 9 cut(s) 194, 243, 585, 606, 644, 678, 757, 1022, 1155
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 1 cut(s) 1044
VpaK11BI GGWCC 2 cut(s) 5, 67
XapI RAATTY 1 cut(s) 631
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 2 cut(s) 715, 761
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 185
XspI CTAG 3 cut(s) 170, 872, 932
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.