Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

23992164 .. 23992709

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAACTTTTTCACACGTTCCCCCTGGTTTTCGGTTCCATCCGACGGATGAAGAACTTGTTGATTACTACCTCAGGAAGAAGGTTACTTCAAGAAGGATTGACCTTGATGTTATTAAAGATGTCGACCTCTATAAAATTGAGCCATGGGATCTTCAAGAACTATGCAGAATAGGGACAGAAGAACAAAACGAATGGTACTTTTTTAGCCATAAAGATAAGAAGTATCCTACTGGAACTCGAACAAATAGAGCCACCGCTGCAGGGTTTTGGAAAGCCACGGGAAGAGACAAGGCCATTTATTCAAAGCATGACTTAATTGGCATGCGGAAAACCTTAGTGTTTTATAAAGGTCGAGCCCCAAATGGTCAAAAGTCCGATTGGATTATGCATGAATACCGCCTTGAAACTGATGAAAACGGAACTCCACAGGCAAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

148

Amino Acids

17.45

Weight (kDa)

8.58

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	3 cut(s)	258, 328, 400
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	2 cut(s)	46, 264
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	93, 158, 306, 407
AjnI	CCWGG	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	438
AxyI	CCTNAGG	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	25, 146, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 264
Bse1I	ACTGG	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	25, 146, 279
BseGI	GGATG	2 cut(s)	40, 55
BseLI	CCNNNNNNNGG	2 cut(s)	46, 264
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	46, 264
BsmAI	GTCTC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	151
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	3 cut(s)	258, 328, 400
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	25, 146, 279
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	74, 337
BstDSI	CCRYGG	2 cut(s)	146, 279
BstF5I	GGATG	2 cut(s)	40, 55
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	2 cut(s)	146, 279
BtsCI	GGATG	2 cut(s)	40, 55
Cac8I	GCNNGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	4 cut(s)	147, 311, 325, 392
CviJI	RGCY	6 cut(s)	145, 210, 254, 278, 296, 359
CviKI_1	RGCY	6 cut(s)	145, 210, 254, 278, 296, 359
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	74, 337
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	361
Eco81I	CCTNAGG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	4 cut(s)	150, 314, 328, 395
FaiI	YATR	9 cut(s)	135, 148, 166, 213, 312, 326, 348, 389, 393
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	4 cut(s)	146, 310, 324, 391
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	27, 62
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	4 cut(s)	150, 314, 328, 395
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	45, 379
Hpy188III	TCNNGA	3 cut(s)	76, 93, 158
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	76, 90
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	168, 263, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	74, 337
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	150, 314, 328, 395
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	12, 39, 61, 219, 249, 416
Lsp1109I	GCAGC	1 cut(s)	247
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	5 cut(s)	65, 91, 146, 194, 297
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	3 cut(s)	138, 318, 438
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	2 cut(s)	83, 140
Mph1103I	ATGCAT	1 cut(s)	393
MseI	TTAA	3 cut(s)	117, 317, 442
MspA1I	CMGCKG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	4 cut(s)	150, 314, 328, 395
NlaIV	GGNNCC	1 cut(s)	38
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	328
PkrI	GCNGC	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	117, 317, 442
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	7 cut(s)	21, 75, 87, 108, 132, 338, 355
SfcI	CTRYAG	1 cut(s)	261
SphI	GCATGC	1 cut(s)	328
Sse9I	AATT	3 cut(s)	138, 318, 438
SsiI	CCGC	3 cut(s)	258, 328, 400
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	146
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	126, 241, 355
TasI	AATT	3 cut(s)	138, 318, 438
Tru1I	TTAA	3 cut(s)	117, 317, 442
Tru9I	TTAA	3 cut(s)	117, 317, 442
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	66, 408, 429
TspGWI	ACGGA	2 cut(s)	62, 435
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.