Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Forward (+)

28030484 .. 28032942

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1195600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAACTTTTTCACACGTTCCCCCTGGTTTCCGGTTCCATCCGACGGATGAAGAACTTGTTGATTACTACCTCAGGAAAAAGGTTACTTCAAGAAGGATTGACCTCGATGTTATTAAAGATGTCGACCTCTATAAAATTGAGCCATGGGATCTTCAAGAAATATGCAGAATAGGGACAGAAGAGCAAAACGATTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACTGGAACTCGAACAAACAGAGCCACAGCTGCAGGGTTTTGGAAAGCCACAGGAAGAGACAAGGCCATTTATTCAAAGCATGACTTAATTGGCATGAGGAAGACCTTAGTGTTTTATAAGGGTCGAGCCCCAAATGGTCAGAAGTCCGATTGGATTATGCATGAATACCGCCTTGAAACTGATGAAAATGGAACTCCGCAGGAAGAAGGATGGGTTGTATGTAGAGTATTCAAGAAGAAAATTGCAAGCATGAGAAATAAGATGAGTGAACACGAGTCACCATGTTGGTACGATGACCAAGTCTCCTTCATGCCAGACTTGGACTCACCAGGGCACAACTCTAGCTCTATGAACATGAACATGGTGCCATACCACCAGCTTCCTAGTTATGCATGCAAGAAAGAGCTTGATCACTTGCCCTTCCAGGTTCCCCACGAGCACTTCTTCCAGCTCCCTCTTCTCGGAAGCCCAAAACTACTTCAATCATCATCAGCCACAGCTGTGAGCAGCTCCAACTCCATGGCACCTCATGCATATGGTATCGACATTAACCACGCTTGCACTTTTCAGCCATTAGATCAAGACCAAAACTTTCATGGTGTAGTCTATGGTAACAATAGTAATGATGATCATCAGCGAACAGTAGATCAACTGACTGATTGGCGAGCGCTGGACAAGTTTGTAGCTTCACAACTTAGCCAGGATGACGCCTCAAAGGGAAATAGCTACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

322

Amino Acids

37.07

Weight (kDa)

6.09

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 135	2.9e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AccB1I	GGYRCC	2 cut(s)	595, 754
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	2 cut(s)	400, 428
AclWI	GGATC	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	939
AfaI	GTAC	2 cut(s)	200, 521
AfeI	AGCGCT	1 cut(s)	900
AfiI	CCNNNNNNNGG	2 cut(s)	46, 692
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	6 cut(s)	93, 158, 306, 407, 463, 713
AjnI	CCWGG	4 cut(s)	25, 559, 654, 930
AleI	CACNNNNGTG	1 cut(s)	731
AluBI	AGCT	9 cut(s)	260, 576, 610, 637, 682, 731, 741, 917, 957
AluI	AGCT	9 cut(s)	260, 576, 610, 637, 682, 731, 741, 917, 957
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	282, 538
AlwI	GGATC	1 cut(s)	159
Aor51HI	AGCGCT	1 cut(s)	900
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	260, 738
AspLEI	GCGC	1 cut(s)	901
AsuHPI	GGTGA	2 cut(s)	501, 549
AxyI	CCTNAGG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	567
BanI	GGYRCC	2 cut(s)	595, 754
BanII	GRGCYC	1 cut(s)	361
BauI	CACGAG	2 cut(s)	503, 665
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	247, 750
BccI	CCATC	2 cut(s)	48, 435
BciT130I	CCWGG	4 cut(s)	27, 561, 656, 932
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	2 cut(s)	640, 859
BcoDI	GTCTC	2 cut(s)	282, 538
BfaI	CTAG	2 cut(s)	573, 615
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	902
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	261, 739
BlsI	GCNGC	2 cut(s)	262, 740
Bme1390I	CCNGG	4 cut(s)	27, 561, 656, 932
BmiI	GGNNCC	4 cut(s)	38, 597, 660, 756
BmrFI	CCNGG	4 cut(s)	27, 561, 656, 932
BpiI	GAAGAC	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	861
BsaHI	GRCGYC	1 cut(s)	939
BsaJI	CCNNGG	4 cut(s)	25, 146, 560, 750
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 692
Bse1I	ACTGG	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	4 cut(s)	27, 561, 656, 932
BseDI	CCNNGG	4 cut(s)	25, 146, 560, 750
BseGI	GGATG	4 cut(s)	40, 55, 446, 940
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	2 cut(s)	46, 692
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	247, 750
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	2 cut(s)	595, 754
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	46, 692
BsmAI	GTCTC	2 cut(s)	282, 538
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	361, 567, 672
Bsp143I	GATC	5 cut(s)	151, 640, 808, 859, 877
Bsp19I	CCATGG	2 cut(s)	146, 750
BspACI	CCGC	2 cut(s)	400, 428
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	962
BspLI	GGNNCC	4 cut(s)	38, 597, 660, 756
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	2 cut(s)	595, 754
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	25, 146, 560, 750
BssMI	GATC	5 cut(s)	151, 640, 808, 859, 877
BssNI	GRCGYC	1 cut(s)	939
BssSI	CACGAG	2 cut(s)	503, 665
BssT1I	CCWWGG	2 cut(s)	146, 750
Bst2BI	CACGAG	2 cut(s)	503, 665
Bst2UI	CCWGG	4 cut(s)	27, 561, 656, 932
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	3 cut(s)	177, 280, 693
BstACI	GRCGYC	1 cut(s)	939
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstC8I	GCNNGC	4 cut(s)	478, 625, 790, 897
BstDEI	CTNAG	3 cut(s)	74, 337, 926
BstDSI	CCRYGG	2 cut(s)	146, 750
BstF5I	GGATG	4 cut(s)	40, 55, 446, 940
BstH2I	RGCGCY	1 cut(s)	902
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	5 cut(s)	154, 643, 811, 862, 880
BstMAI	GTCTC	2 cut(s)	282, 538
BstMBI	GATC	5 cut(s)	151, 640, 808, 859, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 761
BstNI	CCWGG	4 cut(s)	27, 561, 656, 932
BstNSI	RCATGY	1 cut(s)	627
BstSCI	CCNGG	4 cut(s)	25, 559, 654, 930
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	247, 750
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	2 cut(s)	146, 750
BtsCI	GGATG	4 cut(s)	40, 55, 446, 940
Cac8I	GCNNGC	4 cut(s)	478, 625, 790, 897
CciI	TCATGA	1 cut(s)	962
CfoI	GCGC	1 cut(s)	901
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	2 cut(s)	199, 520
CviQI	GTAC	2 cut(s)	199, 520
DdeI	CTNAG	3 cut(s)	74, 337, 926
DpnI	GATC	5 cut(s)	153, 642, 810, 861, 879
DpnII	GATC	5 cut(s)	151, 640, 808, 859, 877
Eam1104I	CTCTTC	3 cut(s)	177, 280, 693
EarI	CTCTTC	3 cut(s)	177, 280, 693
Eco130I	CCWWGG	2 cut(s)	146, 750
Eco24I	GRGCYC	1 cut(s)	361
Eco47III	AGCGCT	1 cut(s)	900
Eco81I	CCTNAGG	1 cut(s)	74
EcoRII	CCWGG	4 cut(s)	25, 559, 654, 930
EcoT14I	CCWWGG	2 cut(s)	146, 750
EcoT22I	ATGCAT	3 cut(s)	393, 625, 766
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	146, 750
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	766
FbaI	TGATCA	2 cut(s)	640, 859
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	261, 739
FokI	GGATG	4 cut(s)	27, 62, 453, 947
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	2 cut(s)	261, 739
FspBI	CTAG	2 cut(s)	573, 615
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	2 cut(s)	261, 739
HaeII	RGCGCY	1 cut(s)	902
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	947
HhaI	GCGC	1 cut(s)	901
Hin1I	GRCGYC	1 cut(s)	939
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	506, 554
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	501, 549
Hpy166II	GTNNAC	2 cut(s)	127, 500
Hpy188I	TCNGA	4 cut(s)	45, 372, 379, 695
Hpy188III	TCNNGA	6 cut(s)	76, 93, 158, 463, 812, 963
Hpy8I	GTNNAC	2 cut(s)	127, 500
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	4 cut(s)	90, 431, 547, 661
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	8 cut(s)	168, 263, 391, 476, 623, 627, 764, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 761
HpyF3I	CTNAG	3 cut(s)	74, 337, 926
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	1 cut(s)	939
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	2 cut(s)	640, 859
Kzo9I	GATC	5 cut(s)	151, 640, 808, 859, 877
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	687, 746
Lsp1109I	GCAGC	2 cut(s)	247, 750
MaeI	CTAG	2 cut(s)	573, 615
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	85, 507, 842
MalI	GATC	5 cut(s)	153, 642, 810, 861, 879
MboI	GATC	5 cut(s)	151, 640, 808, 859, 877
MboII	GAAGA	9 cut(s)	65, 146, 194, 297, 343, 446, 478, 667, 680
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	361, 567, 672
MluCI	AATT	3 cut(s)	138, 318, 471
MlyI	GAGTC	2 cut(s)	515, 548
MmeI	TCCRAC	2 cut(s)	68, 768
MnlI	CCTC	7 cut(s)	83, 116, 140, 321, 696, 768, 952
Mph1103I	ATGCAT	3 cut(s)	393, 625, 766
MseI	TTAA	3 cut(s)	117, 317, 780
MslI	CAYNNNNRTG	3 cut(s)	590, 731, 765
MspA1I	CMGCKG	2 cut(s)	260, 731
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	4 cut(s)	27, 561, 656, 932
MvaI	CCWGG	4 cut(s)	27, 561, 656, 932
MwoI	GCNNNNNNNGC	2 cut(s)	260, 761
NcoI	CCATGG	2 cut(s)	146, 750
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	5 cut(s)	151, 640, 808, 859, 877
NlaIV	GGNNCC	4 cut(s)	38, 597, 660, 756
NmuCI	GTSAC	1 cut(s)	507
NsiI	ATGCAT	3 cut(s)	393, 625, 766
NspI	RCATGY	1 cut(s)	627
OliI	CACNNNNGTG	1 cut(s)	731
PaeI	GCATGC	1 cut(s)	627
PagI	TCATGA	1 cut(s)	962
PciSI	GCTCTTC	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	530
PkrI	GCNGC	2 cut(s)	262, 740
PleI	GAGTC	2 cut(s)	514, 548
PpsI	GAGTC	2 cut(s)	514, 548
PsiI	TTATAA	1 cut(s)	348
Psp6I	CCWGG	4 cut(s)	25, 559, 654, 930
PspGI	CCWGG	4 cut(s)	25, 559, 654, 930
PspN4I	GGNNCC	4 cut(s)	38, 597, 660, 756
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	530
PvuII	CAGCTG	2 cut(s)	260, 731
RsaI	GTAC	2 cut(s)	200, 521
RsaNI	GTAC	2 cut(s)	199, 520
RseI	CAYNNNNRTG	3 cut(s)	590, 731, 765
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	117, 317, 780
SatI	GCNGC	2 cut(s)	261, 739
Sau3AI	GATC	5 cut(s)	151, 640, 808, 859, 877
SchI	GAGTC	2 cut(s)	515, 548
ScrFI	CCNGG	4 cut(s)	27, 561, 656, 932
SduI	GDGCHC	3 cut(s)	361, 567, 672
SfcI	CTRYAG	1 cut(s)	261
SmiMI	CAYNNNNRTG	3 cut(s)	590, 731, 765
SphI	GCATGC	1 cut(s)	627
Sse9I	AATT	3 cut(s)	138, 318, 471
SsiI	CCGC	2 cut(s)	400, 428
SspMI	CTAG	2 cut(s)	573, 615
StyD4I	CCNGG	4 cut(s)	25, 559, 654, 930
StyI	CCWWGG	2 cut(s)	146, 750
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	108, 126, 241, 355, 774
TasI	AATT	3 cut(s)	138, 318, 471
Tru1I	TTAA	3 cut(s)	117, 317, 780
Tru9I	TTAA	3 cut(s)	117, 317, 780
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	2 cut(s)	260, 738
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	7 cut(s)	66, 408, 429, 529, 596, 602, 815
TspGWI	ACGGA	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	530
XceI	RCATGY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	573, 615
Zsp2I	ATGCAT	3 cut(s)	393, 625, 766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.