Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

18094910 .. 18096042

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19430.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAAACTTTTTCACACGTTCCCCCTGGTTTCCGGTTCCATCCGACGGATGAAGAACTTGTTGATTACTACCTCAGGAAAAAGGTTACTTCAAGAAGGATTGACCTTGATGTTATTAAAGATGTCGACCTCTATAAAATTGAGCCATGGGATCTTCAAGAACTATGCAGAATAGGGACAGAAGAGCAAAACGATTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACTGGAACTCGAACAAACAGAGCCACAGCTGCAGGGTTTTGGAAAGCCACAGGAAGAGACAAAGCCATTTATTCAAAGCATGACTTAATTGGCATGAGGAAGACCTTAGTGTTTTATAAAGGTCGAGCCCCAAATGGTCAGAAGTCCGATTGGATTATGCATGAATACCGCCTTGAAACTGATGAAAATGGAGCTCCACAGCAGGAAGAAGGATGGGTTGTATGTAGGGTATTCAAGAAGAAAATTGCAAGCATGAGAAATAAGATGAGTGAACATGAGTCACCATGTTGGTACGATGACCAAGTCTCCTTCATGCCAGACTTAGACTCACCAGGGCACAACTCTAGCTCTATGAACATGAACATGGTGCCATACCACCACCTTCCTAGTTATCCATGCAAGAAAGAGCTTGATCACTTGCCCTTCCAGGTTCCCCACGAGCACTTCTTCCAGCTTCCTCTTCTCGGAAGCCCAAAACTTCTTCAATCATCATCAGCCACAGCTGTAAGCAGCTCCAACTCCATGGCACCTCATGCATATGGCATCGACATTAACCACGCTTGCACTTTTCAGCCGTCAGATCAATCATGGACCAAAATTTTCATGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

281

Amino Acids

32.54

Weight (kDa)

6.7

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AccB1I	GGYRCC	2 cut(s)	598, 757
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	828
AfaI	GTAC	2 cut(s)	200, 524
AfiI	CCNNNNNNNGG	2 cut(s)	46, 695
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	6 cut(s)	93, 158, 306, 407, 466, 716
AjnI	CCWGG	3 cut(s)	25, 562, 657
AluBI	AGCT	7 cut(s)	260, 425, 579, 640, 685, 734, 744
AluI	AGCT	7 cut(s)	260, 425, 579, 640, 685, 734, 744
Alw21I	GWGCWC	2 cut(s)	427, 675
Alw26I	GTCTC	2 cut(s)	282, 541
AlwI	GGATC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	260, 741
ApoI	RAATTY	1 cut(s)	828
AspS9I	GGNCC	1 cut(s)	822
AsuHPI	GGTGA	2 cut(s)	504, 552
AvaII	GGWCC	1 cut(s)	822
AxyI	CCTNAGG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	570
BanI	GGYRCC	2 cut(s)	598, 757
BanII	GRGCYC	2 cut(s)	361, 427
BauI	CACGAG	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	427, 675
BbvI	GCAGC	2 cut(s)	247, 753
BccI	CCATC	2 cut(s)	48, 438
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	3 cut(s)	27, 564, 659
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	282, 541
BfaI	CTAG	2 cut(s)	576, 618
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	261, 742
BlsI	GCNGC	2 cut(s)	262, 743
Bme1390I	CCNGG	3 cut(s)	27, 564, 659
Bme18I	GGWCC	1 cut(s)	822
BmgT120I	GGNCC	1 cut(s)	822
BmiI	GGNNCC	4 cut(s)	38, 600, 663, 759
BmrFI	CCNGG	3 cut(s)	27, 564, 659
BmsI	GCATC	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	338
BsaJI	CCNNGG	4 cut(s)	25, 146, 563, 753
BsaWI	WCCGGW	1 cut(s)	33
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 695
Bse1I	ACTGG	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	74
BseBI	CCWGG	3 cut(s)	27, 564, 659
BseDI	CCNNGG	4 cut(s)	25, 146, 563, 753
BseGI	GGATG	3 cut(s)	40, 55, 449
BseLI	CCNNNNNNNGG	2 cut(s)	46, 695
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	2 cut(s)	247, 753
BshNI	GGYRCC	2 cut(s)	598, 757
BsiHKAI	GWGCWC	2 cut(s)	427, 675
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	46, 695
BsmAI	GTCTC	2 cut(s)	282, 541
BsmFI	GGGAC	1 cut(s)	190
Bsp1286I	GDGCHC	4 cut(s)	361, 427, 570, 675
Bsp143I	GATC	3 cut(s)	151, 643, 811
Bsp19I	CCATGG	2 cut(s)	146, 753
BspACI	CCGC	1 cut(s)	400
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	38, 600, 663, 759
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	2 cut(s)	598, 757
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	25, 146, 563, 753
BssMI	GATC	3 cut(s)	151, 643, 811
BssSI	CACGAG	1 cut(s)	668
BssT1I	CCWWGG	2 cut(s)	146, 753
Bst2BI	CACGAG	1 cut(s)	668
Bst2UI	CCWGG	3 cut(s)	27, 564, 659
Bst6I	CTCTTC	3 cut(s)	177, 280, 696
BstAPI	GCANNNNNTGC	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	481, 793
BstDEI	CTNAG	3 cut(s)	74, 337, 553
BstDSI	CCRYGG	2 cut(s)	146, 753
BstF5I	GGATG	3 cut(s)	40, 55, 449
BstKTI	GATC	3 cut(s)	154, 646, 814
BstMAI	GTCTC	2 cut(s)	282, 541
BstMBI	GATC	3 cut(s)	151, 643, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 764
BstNI	CCWGG	3 cut(s)	27, 564, 659
BstSCI	CCNGG	3 cut(s)	25, 562, 657
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	247, 753
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	237
BtgI	CCRYGG	2 cut(s)	146, 753
BtsCI	GGATG	3 cut(s)	40, 55, 449
Cac8I	GCNNGC	2 cut(s)	481, 793
Cfr13I	GGNCC	1 cut(s)	822
Csp6I	GTAC	2 cut(s)	199, 523
CviQI	GTAC	2 cut(s)	199, 523
DdeI	CTNAG	3 cut(s)	74, 337, 553
DpnI	GATC	3 cut(s)	153, 645, 813
DpnII	GATC	3 cut(s)	151, 643, 811
Eam1104I	CTCTTC	3 cut(s)	177, 280, 696
EarI	CTCTTC	3 cut(s)	177, 280, 696
Ecl136II	GAGCTC	1 cut(s)	425
Eco130I	CCWWGG	2 cut(s)	146, 753
Eco24I	GRGCYC	2 cut(s)	361, 427
Eco47I	GGWCC	1 cut(s)	822
Eco53kI	GAGCTC	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	25, 562, 657
EcoT14I	CCWWGG	2 cut(s)	146, 753
EcoT22I	ATGCAT	2 cut(s)	393, 769
EcoT38I	GRGCYC	2 cut(s)	361, 427
ErhI	CCWWGG	2 cut(s)	146, 753
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	190
FauNDI	CATATG	1 cut(s)	769
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	261, 742
FokI	GGATG	3 cut(s)	27, 62, 456
FriOI	GRGCYC	2 cut(s)	361, 427
Fsp4HI	GCNGC	2 cut(s)	261, 742
FspBI	CTAG	2 cut(s)	576, 618
GluI	GCNGC	2 cut(s)	261, 742
HapII	CCGG	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	509, 557
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	504, 552
Hpy166II	GTNNAC	2 cut(s)	127, 503
Hpy188I	TCNGA	5 cut(s)	45, 372, 379, 698, 811
Hpy188III	TCNNGA	4 cut(s)	76, 93, 158, 466
Hpy8I	GTNNAC	2 cut(s)	127, 503
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	5 cut(s)	90, 434, 550, 623, 664
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	7 cut(s)	168, 263, 391, 479, 630, 767, 795
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 764
HpyF3I	CTNAG	3 cut(s)	74, 337, 553
HpySE526I	ACGT	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	3 cut(s)	151, 643, 811
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	422, 430, 749
Lsp1109I	GCAGC	2 cut(s)	247, 753
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	2 cut(s)	576, 618
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	85, 510
MalI	GATC	3 cut(s)	153, 645, 813
MboI	GATC	3 cut(s)	151, 643, 811
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	4 cut(s)	361, 427, 570, 675
MluCI	AATT	4 cut(s)	138, 318, 474, 828
MlyI	GAGTC	2 cut(s)	518, 551
MmeI	TCCRAC	2 cut(s)	68, 771
MnlI	CCTC	5 cut(s)	83, 140, 321, 699, 771
Mph1103I	ATGCAT	2 cut(s)	393, 769
MseI	TTAA	3 cut(s)	117, 317, 783
MslI	CAYNNNNRTG	2 cut(s)	593, 768
MspA1I	CMGCKG	2 cut(s)	260, 734
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	3 cut(s)	27, 564, 659
MvaI	CCWGG	3 cut(s)	27, 564, 659
MwoI	GCNNNNNNNGC	2 cut(s)	260, 764
NcoI	CCATGG	2 cut(s)	146, 753
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	3 cut(s)	151, 643, 811
NlaIV	GGNNCC	4 cut(s)	38, 600, 663, 759
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	2 cut(s)	393, 769
PciSI	GCTCTTC	1 cut(s)	177
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	262, 743
PleI	GAGTC	2 cut(s)	517, 551
PpsI	GAGTC	2 cut(s)	517, 551
PsiI	TTATAA	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	3 cut(s)	25, 562, 657
PspGI	CCWGG	3 cut(s)	25, 562, 657
PspN4I	GGNNCC	4 cut(s)	38, 600, 663, 759
PspPI	GGNCC	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	533
PvuII	CAGCTG	2 cut(s)	260, 734
RsaI	GTAC	2 cut(s)	200, 524
RsaNI	GTAC	2 cut(s)	199, 523
RseI	CAYNNNNRTG	2 cut(s)	593, 768
SacI	GAGCTC	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	117, 317, 783
SatI	GCNGC	2 cut(s)	261, 742
Sau3AI	GATC	3 cut(s)	151, 643, 811
Sau96I	GGNCC	1 cut(s)	822
SchI	GAGTC	2 cut(s)	518, 551
ScrFI	CCNGG	3 cut(s)	27, 564, 659
SduI	GDGCHC	4 cut(s)	361, 427, 570, 675
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	822
SmiMI	CAYNNNNRTG	2 cut(s)	593, 768
Sse9I	AATT	4 cut(s)	138, 318, 474, 828
SsiI	CCGC	1 cut(s)	400
SspMI	CTAG	2 cut(s)	576, 618
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	3 cut(s)	25, 562, 657
StyI	CCWWGG	2 cut(s)	146, 753
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	4 cut(s)	126, 241, 355, 777
TasI	AATT	4 cut(s)	138, 318, 474, 828
Tru1I	TTAA	3 cut(s)	117, 317, 783
Tru9I	TTAA	3 cut(s)	117, 317, 783
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	2 cut(s)	260, 741
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	7 cut(s)	66, 408, 429, 532, 599, 605, 823
TspGWI	ACGGA	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	822
XapI	RAATTY	1 cut(s)	828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	576, 618
Zsp2I	ATGCAT	2 cut(s)	393, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.