Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

32201658 .. 32202399

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1254700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGAATTAAGATGAGTGAAAATGAGTCACCATGTTGGTACGATGACCAAGTCTCCTTCATGCCAGAATTGGACTCACCAGGGCACAACTCGAGCTCTATGAACATGAACATGGTGCCATACCACCACCTTCCTAATTATCCATGCAAGAAAGAGCTTGATCACTTGCCCTTCCAGGTTCCCCAAGAGCACTTCTTCCAGCTCCCTCTTCTCGGAAGCCCGAAACTAGTTCAATCATCATCAGCCACAGCTGTAAGCAGCTCCAACTCCATGGCACCTCATGCATATAGTATCGACATTAACCACACGTGCACTTTTCAGTCGTCGGATCAAGACCAAAACTTTCATGGTGTAGTCTATGGTAACAGTAGTAATGACGATCATCAGCGAGCAGTAGATCAGCTGACTGATTGGCGAGCGCTGGACAAGTTTGTAGCTTCACAGCTCAGCCAGGATGATGCTTCAAAAGGAAATAGCTACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

162

Amino Acids

18.13

Weight (kDa)

5.1

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	115, 274
AclWI	GGATC	1 cut(s)	336
AcvI	CACGTG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	41
AfeI	AGCGCT	1 cut(s)	420
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	233, 465
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	3 cut(s)	79, 174, 450
AluBI	AGCT	9 cut(s)	96, 157, 202, 251, 261, 403, 437, 445, 477
AluI	AGCT	9 cut(s)	96, 157, 202, 251, 261, 403, 437, 445, 477
Alw21I	GWGCWC	3 cut(s)	98, 192, 314
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	91
Aor51HI	AGCGCT	1 cut(s)	420
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	21, 69
AvaI	CYCGRG	1 cut(s)	91
BaeGI	GKGCMC	2 cut(s)	87, 314
BanI	GGYRCC	2 cut(s)	115, 274
BanII	GRGCYC	1 cut(s)	98
BbrPI	CACGTG	1 cut(s)	309
Bbv12I	GWGCWC	3 cut(s)	98, 192, 314
BbvI	GCAGC	1 cut(s)	270
BciT130I	CCWGG	3 cut(s)	81, 176, 452
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	1 cut(s)	227
BfoI	RGCGCY	1 cut(s)	422
BisI	GCNGC	1 cut(s)	259
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	260
Bme1390I	CCNGG	3 cut(s)	81, 176, 452
BmeT110I	CYCGRG	1 cut(s)	91
BmiI	GGNNCC	3 cut(s)	117, 180, 276
BmrFI	CCNGG	3 cut(s)	81, 176, 452
BmsI	GCATC	1 cut(s)	448
Bpu1102I	GCTNAGC	1 cut(s)	446
BsaAI	YACGTR	1 cut(s)	309
BsaJI	CCNNGG	2 cut(s)	80, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	3 cut(s)	81, 176, 452
BseDI	CCNNGG	2 cut(s)	80, 270
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	460
BseSI	GKGCMC	2 cut(s)	87, 314
BseXI	GCAGC	1 cut(s)	270
BshNI	GGYRCC	2 cut(s)	115, 274
BsiHKAI	GWGCWC	3 cut(s)	98, 192, 314
BsiHKCI	CYCGRG	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	4 cut(s)	87, 98, 192, 314
Bsp143I	GATC	4 cut(s)	160, 328, 379, 397
Bsp1720I	GCTNAGC	1 cut(s)	446
Bsp19I	CCATGG	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	482
BspLI	GGNNCC	3 cut(s)	117, 180, 276
BspPI	GGATC	1 cut(s)	336
BspT107I	GGYRCC	2 cut(s)	115, 274
BssECI	CCNNGG	2 cut(s)	80, 270
BssMI	GATC	4 cut(s)	160, 328, 379, 397
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	3 cut(s)	81, 176, 452
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	390, 417
BstDEI	CTNAG	1 cut(s)	446
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	460
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	4 cut(s)	163, 331, 382, 400
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	4 cut(s)	160, 328, 379, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNI	CCWGG	3 cut(s)	81, 176, 452
BstSCI	CCNGG	3 cut(s)	79, 174, 450
BstSLI	GKGCMC	2 cut(s)	87, 314
BstV1I	GCAGC	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	460
Cac8I	GCNNGC	2 cut(s)	390, 417
CciI	TCATGA	1 cut(s)	482
CfoI	GCGC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	9 cut(s)	33, 61, 106, 112, 144, 271, 281, 347, 483
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	4 cut(s)	162, 330, 381, 399
DpnII	GATC	4 cut(s)	160, 328, 379, 397
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	98
Eco47III	AGCGCT	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	96
Eco72I	CACGTG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	96
EcoRII	CCWGG	3 cut(s)	79, 174, 450
EcoT14I	CCWWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	9 cut(s)	36, 64, 109, 115, 147, 274, 284, 350, 486
FatI	CATG	9 cut(s)	32, 60, 105, 111, 143, 270, 280, 346, 482
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	259
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	259
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	422
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	9 cut(s)	36, 64, 109, 115, 147, 274, 284, 350, 486
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HinfI	GANTC	2 cut(s)	26, 74
HphI	GGTGA	2 cut(s)	21, 69
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	2 cut(s)	215, 328
Hpy188III	TCNNGA	2 cut(s)	332, 483
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	3 cut(s)	67, 140, 181
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	147, 284, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	9 cut(s)	36, 64, 109, 115, 147, 274, 284, 350, 486
HspAI	GCGC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 328, 379, 397
LmnI	GCTCC	2 cut(s)	207, 266
LpnPI	CCDG	9 cut(s)	66, 78, 93, 161, 188, 212, 407, 437, 464
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	27, 362
MalI	GATC	4 cut(s)	162, 330, 381, 399
MboI	GATC	4 cut(s)	160, 328, 379, 397
MboII	GAAGA	2 cut(s)	187, 200
MhlI	GDGCHC	4 cut(s)	87, 98, 192, 314
MluCI	AATT	3 cut(s)	6, 68, 136
MlyI	GAGTC	2 cut(s)	35, 68
MmeI	TCCRAC	2 cut(s)	288, 306
MnlI	CCTC	2 cut(s)	216, 288
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	2 cut(s)	9, 300
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	251, 403
MspR9I	CCNGG	3 cut(s)	81, 176, 452
MvaI	CCWGG	3 cut(s)	81, 176, 452
MwoI	GCNNNNNNNGC	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	4 cut(s)	160, 328, 379, 397
NlaIII	CATG	9 cut(s)	36, 64, 109, 115, 147, 274, 284, 350, 486
NlaIV	GGNNCC	3 cut(s)	117, 180, 276
NmuCI	GTSAC	1 cut(s)	27
NsiI	ATGCAT	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	91
PagI	TCATGA	1 cut(s)	482
PflFI	GACNNNGTC	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	260
PleI	GAGTC	2 cut(s)	34, 68
PmaCI	CACGTG	1 cut(s)	309
PmlI	CACGTG	1 cut(s)	309
PpsI	GAGTC	2 cut(s)	34, 68
Ppu21I	YACGTR	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	79, 174, 450
PspCI	CACGTG	1 cut(s)	309
PspGI	CCWGG	3 cut(s)	79, 174, 450
PspN4I	GGNNCC	3 cut(s)	117, 180, 276
PspXI	VCTCGAGB	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	2 cut(s)	251, 403
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	9, 300
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	4 cut(s)	160, 328, 379, 397
SchI	GAGTC	2 cut(s)	35, 68
ScrFI	CCNGG	3 cut(s)	81, 176, 452
SduI	GDGCHC	4 cut(s)	87, 98, 192, 314
SfaNI	GCATC	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	3 cut(s)	6, 68, 136
SspMI	CTAG	1 cut(s)	227
SstI	GAGCTC	1 cut(s)	98
StyD4I	CCNGG	3 cut(s)	79, 174, 450
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	92, 294
TasI	AATT	3 cut(s)	6, 68, 136
Tru1I	TTAA	2 cut(s)	9, 300
Tru9I	TTAA	2 cut(s)	9, 300
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	4 cut(s)	49, 116, 122, 335
Tth111I	GACNNNGTC	1 cut(s)	50
VneI	GTGCAC	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	91
XspI	CTAG	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.