Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007003

Physical Location & Seq

Genomic Coordinates Reverse (-)

62335656 .. 62337380

Gene Structure 1725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59834

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAACACATTCTCACACGTTCCCCCCGGTTTCCGGTTCCATCCGACTGATGAAGAACTCGTTGATTACTACCTTAGGAAGAAGGTTACTGCAAGAAGGATTGACCTTGATGTTATCAAAGATGTCGACCTCTATAAAATTGAGCCATGGGATCTCCAAGAATTATGCAGGATAGGGACTGAGGAGCAAAGTGACTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACTGGAACTCGAACAAATAGAGCAACTGCAGCTGGGTTCTGGAAAGCCACCGGAAGGGACAAGGCCATTTATGCAAAGCATGACTTAATTGGGATGAGGAAGACCTTGGTGTTTTACAAAGGTCGAGCCCCAAATGGACAAAAGTCGGATTGGATTATGCATGAATACCGCCTTGAAACTGATGAAAATGGAGCTCCCCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAAACTCCCAAGCATGCGAAGGATGAGTGAACACGAATCCCCTTGTTGGTACGATGAGCATGTCTCCTTCATGCCAGACTTGGATTCACCAAACCACAACAACTCCAACAGCTCCATCAATAATCAGATGGCATACCATGGTCACTTTCCTAACTATCCTTGCAAGAAAGAGCTGGATCACTTGCCATTTCAGCACCATGTTCCGAACGAGCACTTCTTCCAGCTCCCGCTTCTAGACAGCCCGAAACTACTACTTCAATCTTCAGCCAATGCTGCTGTGAGTTCAAACTCTATGACAGCGGCTGCATATAGCATTGACATTAACCAGAACTTTCATGCAGTGTATGGTAATAGCAGCAATGAGCTGCAAGCTGTAGATGATGATCAACTAACCGATTGGCGAGTGCTTGACAAGTTTGTAGCTTCACAACTCAGCCAGGATGATGTTTCAAAGGGAAATAGCTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

312

Amino Acids

36.13

Weight (kDa)

6.1

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 135	5.2e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007003)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62380 AT5G62380
fragaria_vesca	FvH4_7g27750 FvH4_7g27750
malus_domestica	MD07G1254700.v1.1 MD07G1254800.v1.1 MD11G1195600.v1.1
prunus_persica	Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1 Prupe.2G278100_v2.0.a1
pyrus_communis	pycom01g19430 pycom07g22800 pycom07g22810
rosa_chinensis	RchiOBHm_Chr1g0374531
rosa_laevigata	RLG00000026730
rosa_multiflora	Rmu_sc0016861.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283420
rosa_rugosa	Rorug01G0384100 Rorug01G0384100
rosa_samantha	Rh1AG394700 Rh1BG359300 Rh1CG372400 Rh1DG390000
rosa_wichuraiana	Rw1G034990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	3 cut(s)	400, 695, 767
AclWI	GGATC	2 cut(s)	159, 651
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	200, 518
AfiI	CCNNNNNNNGG	3 cut(s)	33, 285, 513
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	5 cut(s)	407, 463, 725, 753, 918
AjnI	CCWGG	2 cut(s)	429, 903
AluBI	AGCT	9 cut(s)	263, 425, 579, 640, 691, 832, 839, 890, 930
AluI	AGCT	9 cut(s)	263, 425, 579, 640, 691, 832, 839, 890, 930
Alw21I	GWGCWC	2 cut(s)	427, 681
Alw26I	GTCTC	1 cut(s)	535
AlwI	GGATC	2 cut(s)	159, 651
AlwNI	CAGNNNCTG	1 cut(s)	770
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	5 cut(s)	260, 740, 770, 822, 832
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	546
AxyI	CCTNAGG	1 cut(s)	74
BanII	GRGCYC	2 cut(s)	361, 427
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	427, 681
BbvI	GCAGC	5 cut(s)	272, 727, 757, 819, 834
BccI	CCATC	4 cut(s)	48, 435, 589, 590
BciT130I	CCWGG	2 cut(s)	431, 905
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	850
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	535
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	2 cut(s)	258, 840
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	6 cut(s)	261, 741, 768, 771, 823, 833
BlsI	GCNGC	6 cut(s)	262, 742, 769, 772, 824, 834
Bme1390I	CCNGG	3 cut(s)	27, 431, 905
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	3 cut(s)	27, 431, 905
BoxI	GACNNNNGTC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpuMI	CCSGG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	849
BsaJI	CCNNGG	5 cut(s)	25, 146, 336, 429, 604
BsaWI	WCCGGW	2 cut(s)	33, 281
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 285, 513
Bse1I	ACTGG	2 cut(s)	200, 238
Bse21I	CCTNAGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	832
Bse8I	GATNNNNATC	1 cut(s)	849
BseBI	CCWGG	2 cut(s)	431, 905
BseDI	CCNNGG	5 cut(s)	25, 146, 336, 429, 604
BseGI	GGATG	5 cut(s)	40, 330, 446, 495, 913
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	3 cut(s)	33, 285, 513
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	2 cut(s)	171, 913
BseNI	ACTGG	2 cut(s)	200, 238
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	5 cut(s)	272, 727, 757, 819, 834
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	427, 681
BsiSI	CCGG	3 cut(s)	27, 34, 282
BslFI	GGGAC	2 cut(s)	190, 302
BslI	CCNNNNNNNGG	3 cut(s)	33, 285, 513
BsmAI	GTCTC	1 cut(s)	535
BsmFI	GGGAC	2 cut(s)	190, 302
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	361, 427, 681
Bsp143I	GATC	3 cut(s)	151, 643, 850
Bsp19I	CCATGG	2 cut(s)	146, 604
BspACI	CCGC	3 cut(s)	400, 695, 767
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	172, 912
BspHI	TCATGA	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	2 cut(s)	159, 651
BsrDI	GCAATG	1 cut(s)	832
BsrI	ACTGG	2 cut(s)	200, 238
BssECI	CCNNGG	5 cut(s)	25, 146, 336, 429, 604
BssMI	GATC	3 cut(s)	151, 643, 850
BssT1I	CCWWGG	3 cut(s)	146, 336, 604
Bst2UI	CCWGG	2 cut(s)	431, 905
BstC8I	GCNNGC	2 cut(s)	482, 837
BstDEI	CTNAG	3 cut(s)	74, 180, 899
BstDSI	CCRYGG	2 cut(s)	146, 604
BstF5I	GGATG	5 cut(s)	40, 330, 446, 495, 913
BstKTI	GATC	3 cut(s)	154, 646, 853
BstMAI	GTCTC	1 cut(s)	535
BstMBI	GATC	3 cut(s)	151, 643, 850
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 302, 658, 740
BstNI	CCWGG	2 cut(s)	431, 905
BstNSI	RCATGY	2 cut(s)	484, 530
BstPAI	GACNNNNGTC	1 cut(s)	373
BstSCI	CCNGG	3 cut(s)	25, 429, 903
BstSFI	CTRYAG	2 cut(s)	258, 840
BstV1I	GCAGC	5 cut(s)	272, 727, 757, 819, 834
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	2 cut(s)	146, 604
BtsCI	GGATG	5 cut(s)	40, 330, 446, 495, 913
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	813
Cac8I	GCNNGC	2 cut(s)	482, 837
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	935
Csp6I	GTAC	2 cut(s)	199, 517
CviQI	GTAC	2 cut(s)	199, 517
DdeI	CTNAG	3 cut(s)	74, 180, 899
DpnI	GATC	3 cut(s)	153, 645, 852
DpnII	GATC	3 cut(s)	151, 643, 850
Ecl136II	GAGCTC	1 cut(s)	425
Eco130I	CCWWGG	3 cut(s)	146, 336, 604
Eco24I	GRGCYC	2 cut(s)	361, 427
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	714
Eco81I	CCTNAGG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	429, 903
EcoT14I	CCWWGG	3 cut(s)	146, 336, 604
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	2 cut(s)	361, 427
ErhI	CCWWGG	3 cut(s)	146, 336, 604
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	2 cut(s)	190, 302
FauI	CCCGC	1 cut(s)	702
FbaI	TGATCA	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	6 cut(s)	261, 741, 768, 771, 823, 833
FokI	GGATG	5 cut(s)	27, 337, 453, 502, 920
FriOI	GRGCYC	2 cut(s)	361, 427
Fsp4HI	GCNGC	6 cut(s)	261, 741, 768, 771, 823, 833
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	6 cut(s)	261, 741, 768, 771, 823, 833
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	3 cut(s)	27, 34, 282
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	503, 551
HpaII	CCGG	3 cut(s)	27, 34, 282
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	2 cut(s)	127, 497
Hpy188I	TCNGA	4 cut(s)	45, 379, 594, 672
Hpy188III	TCNNGA	4 cut(s)	271, 463, 701, 936
Hpy8I	GTNNAC	2 cut(s)	127, 497
HpyAV	CCTTC	6 cut(s)	76, 90, 279, 431, 480, 544
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	9 cut(s)	92, 168, 260, 305, 391, 630, 773, 806, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 302, 658, 740
HpyF3I	CTNAG	3 cut(s)	74, 180, 899
HpySE526I	ACGT	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	3 cut(s)	151, 643, 850
LmnI	GCTCC	5 cut(s)	184, 422, 430, 584, 696
Lsp1109I	GCAGC	5 cut(s)	272, 727, 757, 819, 834
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	85, 191, 608
MalI	GATC	3 cut(s)	153, 645, 852
MboI	GATC	3 cut(s)	151, 643, 850
MboII	GAAGA	7 cut(s)	65, 91, 343, 446, 478, 676, 720
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	3 cut(s)	361, 427, 681
MluCI	AATT	3 cut(s)	138, 161, 318
MmeI	TCCRAC	4 cut(s)	68, 254, 357, 597
MnlI	CCTC	3 cut(s)	140, 175, 321
Mph1103I	ATGCAT	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	317, 789
MspA1I	CMGCKG	2 cut(s)	263, 767
MspI	CCGG	3 cut(s)	27, 34, 282
MspR9I	CCNGG	3 cut(s)	27, 431, 905
MvaI	CCWGG	2 cut(s)	431, 905
MwoI	GCNNNNNNNGC	4 cut(s)	260, 302, 658, 740
NciI	CCSGG	1 cut(s)	27
NcoI	CCATGG	2 cut(s)	146, 604
NdeII	GATC	3 cut(s)	151, 643, 850
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	191, 608
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	2 cut(s)	484, 530
PaeI	GCATGC	1 cut(s)	484
PagI	TCATGA	1 cut(s)	935
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	503, 551
PkrI	GCNGC	6 cut(s)	262, 742, 769, 772, 824, 834
PshAI	GACNNNNGTC	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	429, 903
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	2 cut(s)	429, 903
PspN4I	GGNNCC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	200, 518
RsaNI	GTAC	2 cut(s)	199, 517
SacI	GAGCTC	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	317, 789
SatI	GCNGC	6 cut(s)	261, 741, 768, 771, 823, 833
Sau3AI	GATC	3 cut(s)	151, 643, 850
ScrFI	CCNGG	3 cut(s)	27, 431, 905
SduI	GDGCHC	3 cut(s)	361, 427, 681
SfcI	CTRYAG	2 cut(s)	258, 840
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	3 cut(s)	138, 161, 318
SsiI	CCGC	3 cut(s)	400, 695, 767
SspMI	CTAG	1 cut(s)	701
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	3 cut(s)	25, 429, 903
StyI	CCWWGG	3 cut(s)	146, 336, 604
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	126, 241, 355
TasI	AATT	3 cut(s)	138, 161, 318
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	2 cut(s)	503, 551
Tru1I	TTAA	2 cut(s)	317, 789
Tru9I	TTAA	2 cut(s)	317, 789
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	2 cut(s)	191, 608
TseI	GCWGC	5 cut(s)	260, 740, 770, 822, 832
Tsp45I	GTSAC	2 cut(s)	191, 608
TspDTI	ATGAA	7 cut(s)	17, 66, 408, 429, 526, 791, 924
TspRI	CASTG	1 cut(s)	813
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	2 cut(s)	484, 530
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.