ATCG00670

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0016617
Physical Location & Seq
Reverse (-)
69910 .. 71882
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG00670.1

Sequence Viewer

Length: 591 bp
ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGGGTTGACATATACAACCGACTTTATCGAGAAAGATTATTTTTTTTAGGCCAAGAGGTTGATACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCACGCTAGGGTAATGATCCATCAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAATTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAACGGGCAAACCTATATGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

196

Amino Acids

22.1

Weight (kDa)

4.98

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 17 - 194 6.9e-67 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AccII CGCG 1 cut(s) 453
AciI CCGC 4 cut(s) 297, 384, 431, 581
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 3 cut(s) 24, 273, 477
AfiI CCNNNNNNNGG 2 cut(s) 44, 465
AgsI TTSAA 2 cut(s) 303, 587
AjnI CCWGG 2 cut(s) 37, 208
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
AlwI GGATC 1 cut(s) 367
AoxI GGCC 2 cut(s) 106, 294
ApoI RAATTY 1 cut(s) 416
AsuII TTCGAA 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 519
BccI CCATC 3 cut(s) 210, 384, 467
BciT130I CCWGG 2 cut(s) 39, 210
BciVI GTATCC 1 cut(s) 169
BfaI CTAG 3 cut(s) 320, 363, 387
BfuI GTATCC 1 cut(s) 169
BglII AGATCT 1 cut(s) 184
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 39, 210
BmrFI CCNGG 2 cut(s) 39, 210
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 465
BseBI CCWGG 2 cut(s) 39, 210
BseGI GGATG 3 cut(s) 221, 308, 532
BseLI CCNNNNNNNGG 2 cut(s) 44, 465
BseMII CTCAG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 2 cut(s) 108, 296
BslI CCNNNNNNNGG 2 cut(s) 44, 465
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 2 cut(s) 108, 296
Bsp119I TTCGAA 1 cut(s) 31
Bsp1407I TGTACA 2 cut(s) 271, 475
Bsp143I GATC 3 cut(s) 184, 372, 571
Bsp68I TCGCGA 1 cut(s) 453
BspACI CCGC 4 cut(s) 297, 384, 431, 581
BspANI GGCC 2 cut(s) 108, 296
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 453
BspPI GGATC 1 cut(s) 367
BspT104I TTCGAA 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 271, 475
BssMI GATC 3 cut(s) 184, 372, 571
Bst2UI CCWGG 2 cut(s) 39, 210
BstAPI GCANNNNNTGC 1 cut(s) 259
BstAUI TGTACA 2 cut(s) 271, 475
BstBI TTCGAA 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 221, 308, 532
BstFNI CGCG 1 cut(s) 453
BstKTI GATC 3 cut(s) 187, 375, 574
BstMBI GATC 3 cut(s) 184, 372, 571
BstMWI GCNNNNNNNGC 3 cut(s) 259, 305, 548
BstNI CCWGG 2 cut(s) 39, 210
BstSCI CCNGG 2 cut(s) 37, 208
BstUI CGCG 1 cut(s) 453
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 560
BstYI RGATCY 1 cut(s) 184
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 2 cut(s) 108, 296
BtsCI GGATG 3 cut(s) 221, 308, 532
BtuMI TCGCGA 1 cut(s) 453
Csp6I GTAC 3 cut(s) 23, 272, 476
CviAII CATG 3 cut(s) 286, 517, 560
CviJI RGCY 5 cut(s) 108, 236, 296, 551, 557
CviKI_1 RGCY 5 cut(s) 108, 236, 296, 551, 557
CviQI GTAC 3 cut(s) 23, 272, 476
DdeI CTNAG 1 cut(s) 161
DpnI GATC 3 cut(s) 186, 374, 573
DpnII GATC 3 cut(s) 184, 372, 571
EaeI YGGCCR 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 37, 208
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 3 cut(s) 289, 520, 563
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 3 cut(s) 285, 516, 559
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 3 cut(s) 228, 295, 539
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 3 cut(s) 320, 363, 387
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 2 cut(s) 108, 296
Hin1II CATG 3 cut(s) 289, 520, 563
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 326, 511
Hpy188III TCNNGA 4 cut(s) 86, 130, 228, 452
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 2 cut(s) 253, 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 305, 548
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 3 cut(s) 289, 520, 563
Kzo9I GATC 3 cut(s) 184, 372, 571
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 5 cut(s) 24, 51, 195, 213, 222
LweI GCATC 1 cut(s) 317
MaeI CTAG 3 cut(s) 320, 363, 387
MaeII ACGT 1 cut(s) 343
MalI GATC 3 cut(s) 186, 374, 573
MboI GATC 3 cut(s) 184, 372, 571
MboII GAAGA 2 cut(s) 446, 524
MflI RGATCY 1 cut(s) 184
MluCI AATT 5 cut(s) 254, 333, 416, 437, 564
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 4 cut(s) 106, 320, 366, 394
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 1 cut(s) 444
MspR9I CCNGG 2 cut(s) 39, 210
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 2 cut(s) 39, 210
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 3 cut(s) 259, 305, 548
NdeII GATC 3 cut(s) 184, 372, 571
NlaIII CATG 3 cut(s) 289, 520, 563
NruI TCGCGA 1 cut(s) 453
NsiI ATGCAT 1 cut(s) 287
NspV TTCGAA 1 cut(s) 31
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 133
PfoI TCCNGGA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 298
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 37, 208
PspGI CCWGG 2 cut(s) 37, 208
PsuI RGATCY 1 cut(s) 184
RruI TCGCGA 1 cut(s) 453
RsaI GTAC 3 cut(s) 24, 273, 477
RsaNI GTAC 3 cut(s) 23, 272, 476
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 3 cut(s) 184, 372, 571
ScrFI CCNGG 2 cut(s) 39, 210
SetI ASST 5 cut(s) 28, 117, 346, 496, 559
SfaNI GCATC 1 cut(s) 317
SfuI TTCGAA 1 cut(s) 31
Sse9I AATT 5 cut(s) 254, 333, 416, 437, 564
SsiI CCGC 4 cut(s) 297, 384, 431, 581
SspMI CTAG 3 cut(s) 320, 363, 387
StyD4I CCNGG 2 cut(s) 37, 208
TaiI ACGT 1 cut(s) 346
TaqI TCGA 3 cut(s) 31, 85, 131
TasI AATT 5 cut(s) 254, 333, 416, 437, 564
TatI WGTACW 2 cut(s) 271, 475
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 416
XspI CTAG 3 cut(s) 320, 363, 387
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.