Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_520

Orthogroup ID

OG0016617

Physical Location & Seq

Genomic Coordinates Forward (+)

275777 .. 277229

Gene Structure 1453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom520g00310.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAATTCCATTATAGAACCGTATACAATGCGTAAAAGATGCATGTACAGTTGTTCAATTATATATTTATTCTTCATCTCTTCACCTTACCATCATCAACCTGCTAGTTCTTTTTATGAAGCACAGATGGGAGAATTTATCTTGGAAGCGGAAGAACTTTTGAAGCTACGTGAAACCGTCACAAGGGTTTTTATGTTAGCATCAGAAGCCCAAGCTCATGGAATTGTTGATCTTGGTTCTTTGTTTGCAACCTCGCATAGTTTTTGGTCCTCGGGTACGACAAAGTTTCAAACAATCAAATCTACAAAATTTAAAAACAACAAAATAAAAGGGAAATTACCTGAAAAGCACATGGAAACTCACTCAAGTTATAGGAGTCCCGGATCGGAGCCCCCGGTTTGTCTACATATTTTTCTTTCACAACCTTATGGTGGATCAAAGTTGCCGTATCTCCTTGCCCAAAACAACCAAGTGGATGAACTACAGGAGGCCCAGCTTGTAGAGTTCGTCTTGGTTTTGGCACAAGTTGAATTGATCCTCCAATTTCATCTTCCTTCTCTTCTTTTTTTTGGGGCGCGGGGCGGGGCGGGGCAGGGCCGGGGGGGGGGGGGGGGGATGGGGAGGGGGAGGGATTCTCCTAAACTGAGTCCACTCACCAAACAAAAGTTGCGACATCCTAAGAATAACGTAGTGGTTGAGCTGCCCAAACCAATCAGTGTAGTCCAGATCAACCAAATGACCGAAACTAGATTTACCGTGACATCCCGAGGTGGACATACAAGTTCCAACAGAGACGAAGATTTGACTTTCAACCTCATGCACATTGGATATGCACAATGTATGCATTTTGTCTGCCCAATTGAATCGGTTCATCAACCAAATACAACCAAGTATGCCCACATCTACACATGCATAGAAGATGCACATAATATGCACATAATATCTACCGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

319

Amino Acids

35.68

Weight (kDa)

8.45

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00670
malus_domestica	MD11G1294400.v1.1 MD13G1005500.v1.1 MD16G1020700.v1.1
pyrus_communis	pycom520g00310
rosa_chinensis	RchiOBHm_Chr6g0260431 RchiOBHm_Chr6g0260441 RchiOBHm_CPg0501991
rosa_rugosa	Rorug06G0485200
rosa_samantha	Rh5BG446400 Rh5CG468400 Rh5DG458800 Rh5DG458900 Rh7BG091900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	109
AccI	GTMKAC	2 cut(s)	23, 403
AccII	CGCG	1 cut(s)	577
AciI	CCGC	4 cut(s)	149, 577, 582, 587
AclWI	GGATC	3 cut(s)	391, 442, 529
AcsI	RAATTY	3 cut(s)	4, 134, 308
AfaI	GTAC	2 cut(s)	47, 277
AfiI	CCNNNNNNNGG	3 cut(s)	183, 431, 604
AgsI	TTSAA	6 cut(s)	57, 163, 290, 530, 811, 863
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AluBI	AGCT	4 cut(s)	166, 215, 496, 700
AluI	AGCT	4 cut(s)	166, 215, 496, 700
Alw26I	GTCTC	1 cut(s)	786
AlwI	GGATC	3 cut(s)	391, 442, 529
Ama87I	CYCGRG	2 cut(s)	271, 765
AoxI	GGCC	2 cut(s)	489, 595
ApeKI	GCWGC	1 cut(s)	700
ApoI	RAATTY	3 cut(s)	4, 134, 308
Asp700I	GAANNNNTTC	1 cut(s)	867
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	3 cut(s)	267, 490, 595
AsuC2I	CCSGG	3 cut(s)	381, 395, 599
AsuHPI	GGTGA	2 cut(s)	75, 646
AvaI	CYCGRG	2 cut(s)	271, 765
AvaII	GGWCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	687
BccI	CCATC	3 cut(s)	99, 121, 610
BceAI	ACGGC	1 cut(s)	430
BcnI	CCSGG	3 cut(s)	381, 395, 599
BcoDI	GTCTC	1 cut(s)	786
BfaI	CTAG	2 cut(s)	105, 747
BfmI	CTRYAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	109
BisI	GCNGC	1 cut(s)	701
BlsI	GCNGC	1 cut(s)	702
Bme1390I	CCNGG	3 cut(s)	381, 395, 599
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	2 cut(s)	271, 765
BmgT120I	GGNCC	3 cut(s)	267, 490, 595
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	3 cut(s)	381, 395, 599
BmsI	GCATC	3 cut(s)	29, 209, 910
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	3 cut(s)	381, 395, 599
BsaAI	YACGTR	1 cut(s)	170
BsaJI	CCNNGG	4 cut(s)	270, 393, 598, 766
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 431, 604
BseDI	CCNNGG	4 cut(s)	270, 393, 598, 766
BseGI	GGATG	4 cut(s)	481, 621, 673, 761
BseLI	CCNNNNNNNGG	3 cut(s)	183, 431, 604
BseMII	CTCAG	1 cut(s)	635
BseXI	GCAGC	1 cut(s)	687
BseYI	CCCAGC	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	577
BshFI	GGCC	2 cut(s)	491, 597
BsiHKCI	CYCGRG	2 cut(s)	271, 765
BsiSI	CCGG	3 cut(s)	381, 395, 598
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	3 cut(s)	183, 431, 604
BsmAI	GTCTC	1 cut(s)	786
BsmBI	CGTCTC	1 cut(s)	786
BsmFI	GGGAC	1 cut(s)	363
BsnI	GGCC	2 cut(s)	491, 597
BsoBI	CYCGRG	2 cut(s)	271, 765
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	229, 383, 434, 534, 726
BspACI	CCGC	4 cut(s)	149, 577, 582, 587
BspANI	GGCC	2 cut(s)	491, 597
BspCNI	CTCAG	1 cut(s)	636
BspFNI	CGCG	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	953
BspLI	GGNNCC	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	109
BspPI	GGATC	3 cut(s)	391, 442, 529
BsrGI	TGTACA	1 cut(s)	45
BssECI	CCNNGG	4 cut(s)	270, 393, 598, 766
BssMI	GATC	5 cut(s)	229, 383, 434, 534, 726
BssNAI	GTATAC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	24
Bst4CI	ACNGT	4 cut(s)	21, 50, 178, 757
Bst6I	CTCTTC	2 cut(s)	85, 564
BstAUI	TGTACA	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	644, 678
BstF5I	GGATG	4 cut(s)	481, 621, 673, 761
BstFNI	CGCG	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	5 cut(s)	232, 386, 437, 537, 729
BstMAI	GTCTC	1 cut(s)	786
BstMBI	GATC	5 cut(s)	229, 383, 434, 534, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNSI	RCATGY	2 cut(s)	46, 912
BstSCI	CCNGG	3 cut(s)	379, 393, 597
BstSFI	CTRYAG	1 cut(s)	482
BstUI	CGCG	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	687
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstZ17I	GTATAC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	491, 597
BtsCI	GGATG	4 cut(s)	481, 621, 673, 761
BtsIMutI	CAGTG	1 cut(s)	721
BveI	ACCTGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	953
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	3 cut(s)	267, 490, 595
Csp6I	GTAC	2 cut(s)	46, 276
CviAII	CATG	6 cut(s)	43, 218, 352, 817, 909, 954
CviJI	RGCY	8 cut(s)	166, 209, 215, 391, 491, 496, 597, 700
CviKI_1	RGCY	8 cut(s)	166, 209, 215, 391, 491, 496, 597, 700
CviQI	GTAC	2 cut(s)	46, 276
DdeI	CTNAG	2 cut(s)	644, 678
DpnI	GATC	5 cut(s)	231, 385, 436, 536, 728
DpnII	GATC	5 cut(s)	229, 383, 434, 534, 726
DraI	TTTAAA	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	85, 564
EarI	CTCTTC	2 cut(s)	85, 564
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	267
Eco88I	CYCGRG	2 cut(s)	271, 765
EcoRI	GAATTC	1 cut(s)	4
EcoT22I	ATGCAT	3 cut(s)	44, 846, 914
EcoT38I	GRGCYC	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	786
FaeI	CATG	6 cut(s)	46, 221, 355, 820, 912, 957
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	6 cut(s)	42, 217, 351, 816, 908, 953
FauI	CCCGC	3 cut(s)	570, 575, 580
FblI	GTMKAC	2 cut(s)	23, 403
Fnu4HI	GCNGC	1 cut(s)	701
FokI	GGATG	4 cut(s)	488, 628, 660, 748
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	701
FspBI	CTAG	2 cut(s)	105, 747
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	1 cut(s)	701
GsaI	CCCAGC	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	491, 597
HapII	CCGG	3 cut(s)	381, 395, 598
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	6 cut(s)	46, 221, 355, 820, 912, 957
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	5 cut(s)	376, 632, 646, 863, 950
HpaII	CCGG	3 cut(s)	381, 395, 598
HphI	GGTGA	2 cut(s)	75, 646
Hpy166II	GTNNAC	4 cut(s)	24, 404, 650, 773
Hpy188I	TCNGA	2 cut(s)	205, 388
Hpy188III	TCNNGA	3 cut(s)	724, 765, 954
Hpy8I	GTNNAC	4 cut(s)	24, 404, 650, 773
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	4 cut(s)	21, 50, 178, 757
HpyCH4IV	ACGT	2 cut(s)	169, 687
HpyCH4V	TGCA	8 cut(s)	42, 248, 820, 833, 844, 912, 923, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	644, 678
HpySE526I	ACGT	2 cut(s)	169, 687
Hsp92II	CATG	6 cut(s)	46, 221, 355, 820, 912, 957
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	5 cut(s)	229, 383, 434, 534, 726
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	114, 354, 394, 408, 470, 506, 578, 611, 737
Lsp1109I	GCAGC	1 cut(s)	687
LweI	GCATC	3 cut(s)	29, 209, 910
MaeI	CTAG	2 cut(s)	105, 747
MaeII	ACGT	2 cut(s)	169, 687
MaeIII	GTNAC	2 cut(s)	178, 757
MalI	GATC	5 cut(s)	231, 385, 436, 536, 728
MboI	GATC	5 cut(s)	229, 383, 434, 534, 726
MboII	GAAGA	7 cut(s)	64, 72, 164, 542, 551, 809, 929
MfeI	CAATTG	1 cut(s)	858
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	9 cut(s)	4, 57, 134, 222, 308, 335, 530, 542, 858
MlyI	GAGTC	2 cut(s)	385, 655
MmeI	TCCRAC	1 cut(s)	810
MnlI	CCTC	8 cut(s)	262, 280, 481, 548, 615, 621, 761, 824
Mph1103I	ATGCAT	3 cut(s)	44, 846, 914
MroXI	GAANNNNTTC	1 cut(s)	867
MseI	TTAA	1 cut(s)	312
MspI	CCGG	3 cut(s)	381, 395, 598
MspR9I	CCNGG	3 cut(s)	381, 395, 599
MunI	CAATTG	1 cut(s)	858
MvnI	CGCG	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	3 cut(s)	381, 395, 599
NdeII	GATC	5 cut(s)	229, 383, 434, 534, 726
NlaIII	CATG	6 cut(s)	46, 221, 355, 820, 912, 957
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	2 cut(s)	178, 757
NsiI	ATGCAT	3 cut(s)	44, 846, 914
NspI	RCATGY	2 cut(s)	46, 912
PagI	TCATGA	1 cut(s)	953
PdmI	GAANNNNTTC	1 cut(s)	867
PfeI	GAWTC	3 cut(s)	632, 863, 950
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	702
PleI	GAGTC	2 cut(s)	384, 654
PpsI	GAGTC	2 cut(s)	384, 654
Ppu21I	YACGTR	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	3 cut(s)	267, 490, 595
RsaI	GTAC	2 cut(s)	47, 277
RsaNI	GTAC	2 cut(s)	46, 276
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	701
Sau3AI	GATC	5 cut(s)	229, 383, 434, 534, 726
Sau96I	GGNCC	3 cut(s)	267, 490, 595
SchI	GAGTC	2 cut(s)	385, 655
ScrFI	CCNGG	3 cut(s)	381, 395, 599
SduI	GDGCHC	1 cut(s)	393
SfaNI	GCATC	3 cut(s)	29, 209, 910
SfcI	CTRYAG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	9 cut(s)	4, 57, 134, 222, 308, 335, 530, 542, 858
SsiI	CCGC	4 cut(s)	149, 577, 582, 587
SspMI	CTAG	2 cut(s)	105, 747
StyD4I	CCNGG	3 cut(s)	379, 393, 597
TaaI	ACNGT	4 cut(s)	21, 50, 178, 757
TaiI	ACGT	2 cut(s)	172, 690
TaqII	GACCGA	1 cut(s)	755
TasI	AATT	9 cut(s)	4, 57, 134, 222, 308, 335, 530, 542, 858
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	3 cut(s)	632, 863, 950
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	2 cut(s)	178, 757
TseI	GCWGC	1 cut(s)	700
Tsp45I	GTSAC	2 cut(s)	178, 757
TspDTI	ATGAA	7 cut(s)	17, 64, 132, 492, 536, 860, 942
TspRI	CASTG	1 cut(s)	721
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	3 cut(s)	4, 134, 308
XceI	RCATGY	2 cut(s)	46, 912
XmiI	GTMKAC	2 cut(s)	23, 403
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	2 cut(s)	105, 747
Zsp2I	ATGCAT	3 cut(s)	44, 846, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.