Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016617

Physical Location & Seq

Genomic Coordinates Reverse (-)

60492012 .. 60494008

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0485200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGGGATACTGTGCTGTTTCGACGGAGGCAATAGTAGCGCAGAGAGAAAAGAACAAGAGAGGTTGGCCTCTGCAGAAGTTGTTGCCAAAGCTGCCGAAGCCGCCCAAAGAAGGCAAGAGGAATTTGAGAAGTCTGCAGCTGGTAGAGCTGCACGTGCACAGCAACAGGCGGCTGCAAAGCAAGCTGCCAACTCCAACAAAGGCGAACCAGTGTTAAAGTGGTCAATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

77

Amino Acids

8.18

Weight (kDa)

8.74

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SVIP	PF15811	5 - 72	2.9e-06	Small VCP/p97-interacting protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00670
malus_domestica	MD11G1294400.v1.1 MD13G1005500.v1.1 MD16G1020700.v1.1
pyrus_communis	pycom520g00310
rosa_chinensis	RchiOBHm_Chr6g0260431 RchiOBHm_Chr6g0260441 RchiOBHm_CPg0501991
rosa_rugosa	Rorug06G0485200
rosa_samantha	Rh5BG446400 Rh5CG468400 Rh5DG458800 Rh5DG458900 Rh7BG091900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 170
AcsI	RAATTY	1 cut(s)	122
AcvI	CACGTG	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	111
AluBI	AGCT	4 cut(s)	92, 140, 149, 185
AluI	AGCT	4 cut(s)	92, 140, 149, 185
Alw21I	GWGCWC	1 cut(s)	160
Alw44I	GTGCAC	1 cut(s)	156
AoxI	GGCC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	5 cut(s)	92, 137, 149, 173, 185
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	79, 136, 149, 160, 172
BfmI	CTRYAG	2 cut(s)	72, 135
BisI	GCNGC	7 cut(s)	93, 102, 138, 150, 171, 174, 186
BlsI	GCNGC	7 cut(s)	94, 103, 139, 151, 172, 175, 187
BsaAI	YACGTR	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	209
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	5 cut(s)	79, 136, 149, 160, 172
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	102, 170
BspANI	GGCC	1 cut(s)	68
BspMAI	CTGCAG	2 cut(s)	76, 139
BsrI	ACTGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	7 cut(s)	36, 92, 98, 101, 146, 155, 182
BstSFI	CTRYAG	2 cut(s)	72, 135
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	79, 136, 149, 160, 172
BsuRI	GGCC	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	41
CviJI	RGCY	7 cut(s)	68, 92, 101, 140, 149, 173, 185
CviKI_1	RGCY	7 cut(s)	68, 92, 101, 140, 149, 173, 185
Eco72I	CACGTG	1 cut(s)	155
Fnu4HI	GCNGC	7 cut(s)	93, 102, 138, 150, 171, 174, 186
Fsp4HI	GCNGC	7 cut(s)	93, 102, 138, 150, 171, 174, 186
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	7 cut(s)	93, 102, 138, 150, 171, 174, 186
HaeIII	GGCC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
Hpy166II	GTNNAC	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	158
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	5 cut(s)	74, 137, 152, 158, 176
HpyF10VI	GCNNNNNNNGC	7 cut(s)	36, 92, 98, 101, 146, 155, 182
HpySE526I	ACGT	1 cut(s)	154
HspAI	GCGC	1 cut(s)	39
LpnPI	CCDG	3 cut(s)	126, 152, 222
Lsp1109I	GCAGC	5 cut(s)	79, 136, 149, 160, 172
MaeII	ACGT	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	20, 54, 79, 112
MseI	TTAA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	140
MwoI	GCNNNNNNNGC	7 cut(s)	36, 92, 98, 101, 146, 155, 182
PkrI	GCNGC	7 cut(s)	94, 103, 139, 151, 172, 175, 187
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PspCI	CACGTG	1 cut(s)	155
PstI	CTGCAG	2 cut(s)	76, 139
PvuII	CAGCTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	7 cut(s)	93, 102, 138, 150, 171, 174, 186
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	65, 94, 142, 151, 157, 187
SfcI	CTRYAG	2 cut(s)	72, 135
SgeI	CNNG	8 cut(s)	68, 128, 153, 165, 167, 179, 194, 221
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	2 cut(s)	102, 170
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	122
TauI	GCSGC	2 cut(s)	104, 173
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	5 cut(s)	92, 137, 149, 173, 185
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	216
VneI	GTGCAC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.