RCHIOBHM_CPG0501991

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Pt
OG0016617
Physical Location & Seq
Forward (+)
41388 .. 41840
453 bp
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UTR
Exon/CDS
Intron
PRQ15688

Sequence Viewer

Length: 333 bp
ATGCCTGTACGGTTGTTCAATTATATCTTTTTGATTATTCTTTATCTCCTCACTTTCATCATGCGAGATAGAAGAAACATTTTTTATGTTATATCATATATTATCAGGGTAATGATCCATCAACCTGCTAGTTCTTTTTACGAGGCACAGACGGGAGAATTTGTCCTGGAAGCGGAAGAGCTGCTGAAGCTGCGCGAAACCATCACAAGGGTTTATGCACAAAGGACAGGCAAACCCCTATGGGTTGTATCCGAAGACATGGAAAGAGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

110

Amino Acids

12.95

Weight (kDa)

5.38

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 36 - 109 2.5e-19 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AccII CGCG 1 cut(s) 195
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 172, 207
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 181, 190, 299
AluI AGCT 3 cut(s) 181, 190, 299
AlwI GGATC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 181, 190
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 168, 177
BccI CCATC 2 cut(s) 126, 209
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 259
BfaI CTAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 2 cut(s) 182, 191
BlsI GCNGC 2 cut(s) 183, 192
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 207
BseBI CCWGG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 172, 207
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 168, 177
Bsh1236I CGCG 1 cut(s) 195
BslI CCNNNNNNNGG 2 cut(s) 172, 207
Bsp143I GATC 2 cut(s) 114, 313
BspACI CCGC 1 cut(s) 173
BspFNI CGCG 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 171
BssMI GATC 2 cut(s) 114, 313
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 171
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 2 cut(s) 117, 316
BstMBI GATC 2 cut(s) 114, 313
BstMWI GCNNNNNNNGC 3 cut(s) 187, 190, 290
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 168, 177
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 302
BsuI GTATCC 1 cut(s) 259
BveI ACCTGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 8
CviAII CATG 3 cut(s) 61, 259, 302
CviJI RGCY 4 cut(s) 181, 190, 293, 299
CviKI_1 RGCY 4 cut(s) 181, 190, 293, 299
CviQI GTAC 1 cut(s) 8
DpnI GATC 2 cut(s) 116, 315
DpnII GATC 2 cut(s) 114, 313
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 3 cut(s) 64, 262, 305
FatI CATG 3 cut(s) 60, 258, 301
Fnu4HI GCNGC 2 cut(s) 182, 191
Fsp4HI GCNGC 2 cut(s) 182, 191
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 182, 191
HhaI GCGC 1 cut(s) 195
Hin1II CATG 3 cut(s) 64, 262, 305
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 190, 290
Hsp92II CATG 3 cut(s) 64, 262, 305
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 114, 313
LguI GCTCTTC 1 cut(s) 171
LpnPI CCDG 6 cut(s) 18, 91, 138, 152, 179, 213
Lsp1109I GCAGC 2 cut(s) 168, 177
MaeI CTAG 1 cut(s) 129
MalI GATC 2 cut(s) 116, 315
MboI GATC 2 cut(s) 114, 313
MboII GAAGA 3 cut(s) 84, 188, 266
MluCI AATT 3 cut(s) 19, 158, 306
MnlI CCTC 2 cut(s) 59, 136
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 187, 190, 290
NdeII GATC 2 cut(s) 114, 313
NlaIII CATG 3 cut(s) 64, 262, 305
PciSI GCTCTTC 1 cut(s) 171
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 2 cut(s) 183, 192
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 171
SatI GCNGC 2 cut(s) 182, 191
Sau3AI GATC 2 cut(s) 114, 313
ScrFI CCNGG 1 cut(s) 167
SetI ASST 4 cut(s) 127, 183, 192, 301
Sse9I AATT 3 cut(s) 19, 158, 306
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 12
TasI AATT 3 cut(s) 19, 158, 306
TseI GCWGC 2 cut(s) 181, 190
TspDTI ATGAA 1 cut(s) 46
XapI RAATTY 1 cut(s) 158
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.