RchiOBHm_Chr6g0260441

ATP-dependent Clp protease proteolytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016617
Physical Location & Seq
Reverse (-)
15421286 .. 15421558
273 bp
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UTR
Exon/CDS
Intron
PRQ23355

Sequence Viewer

Length: 273 bp
ATGATTTTTGTTGAACCGTATGCATCAAAAGGTGCATGTACAGTTTCTAAGGGATACCATTTTATCCCAATCAACCGACTTTATCGAGAAAGATTACTTTTTTTAGGCCAAGGGGTTGATAGCGAGACCTCGAATCAACTTATTGGTCTTATGGTATATCTCAGCATAGAGGATGATACCAAAGATCTGTATTTGTTTATAAACTCTCCTGGCGGATGGGTAATACCCGGAGTAGCTATTTATGATACTATGCAATTTGCACTATGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

90

Amino Acids

10.14

Weight (kDa)

4.79

Isoelectric Point (pI)

28.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 23 - 87 1.6e-19 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AciI CCGC 1 cut(s) 213
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 228
BccI CCATC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 47
BglII AGATCT 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 210, 228
BmrFI CCNGG 2 cut(s) 210, 228
BmsI GCATC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 178, 221
BseMII CTCAG 1 cut(s) 175
BshFI GGCC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 38
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 18, 43
BstAUI TGTACA 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 48, 161
BstF5I GGATG 2 cut(s) 178, 221
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 208, 226
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuI GTATCC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 178, 221
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 36
CviJI RGCY 2 cut(s) 108, 236
CviKI_1 RGCY 2 cut(s) 108, 236
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 48, 161
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 39
FaiI YATR 9 cut(s) 21, 37, 152, 157, 167, 200, 243, 251, 265
FatI CATG 1 cut(s) 35
FokI GGATG 2 cut(s) 185, 228
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 228
Hin1II CATG 1 cut(s) 39
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 228
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 18, 43
HpyCH4V TGCA 4 cut(s) 23, 35, 253, 260
HpyF3I CTNAG 2 cut(s) 48, 161
Hsp92II CATG 1 cut(s) 39
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 3 cut(s) 195, 222, 241
LweI GCATC 1 cut(s) 32
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MflI RGATCY 1 cut(s) 184
MluCI AATT 1 cut(s) 254
MnlI CCTC 2 cut(s) 139, 163
Mph1103I ATGCAT 1 cut(s) 25
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 210, 228
MvaI CCWGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 228
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 1 cut(s) 39
PfeI GAWTC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
Sau3AI GATC 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 210, 228
SetI ASST 3 cut(s) 34, 131, 238
SfaNI GCATC 1 cut(s) 32
SgeI CNNG 9 cut(s) 48, 98, 122, 136, 142, 221, 222, 239, 240
Sse9I AATT 1 cut(s) 254
SsiI CCGC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 208, 226
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 18, 43
TaqI TCGA 2 cut(s) 85, 131
TasI AATT 1 cut(s) 254
TatI WGTACW 1 cut(s) 38
TfiI GAWTC 1 cut(s) 133
XceI RCATGY 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.