MD11G1294400.v1.1

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016617
Physical Location & Seq
Reverse (-)
41327284 .. 41328305
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1294400.v1.1.491

Sequence Viewer

Length: 297 bp
ATGCAATTTGTGCGACCAGATATACAGACAATATGCATGGGATTAGCCGCTTCAATGAGATCTTTTATTCTAGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACATATGGGAGAATTTATCTTGGAAGCGGAAGAACTTTTGAAGTTGCGCGAAACCGTCACAAGGGTTTATGTACAAAGGATAGGCAAACCCTTATGGGTTGTATCCGAAAATATGGAAAGAGATGTTTTTATGTTAGCAACAGAAACCCAAGCTCATGGAATTGTTGATCTTGTAGTGACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

99

Amino Acids

11.24

Weight (kDa)

5.1

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 25 - 97 1.1e-14 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 97
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 48, 137
AclWI GGATC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 122
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 54, 151
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
AlwI GGATC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 159
BccI CCATC 1 cut(s) 90
BciVI GTATCC 1 cut(s) 223
BfaI CTAG 2 cut(s) 71, 93
BfuAI ACCTGC 1 cut(s) 97
BfuI GTATCC 1 cut(s) 223
BglII AGATCT 1 cut(s) 59
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 59, 78, 277
BspACI CCGC 2 cut(s) 48, 137
BspFNI CGCG 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 1 cut(s) 73
BsrGI TGTACA 1 cut(s) 181
BssMI GATC 3 cut(s) 59, 78, 277
Bst4CI ACNGT 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 10
BstAUI TGTACA 1 cut(s) 181
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 3 cut(s) 62, 81, 280
BstMBI GATC 3 cut(s) 59, 78, 277
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstUI CGCG 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 1 cut(s) 59
BsuI GTATCC 1 cut(s) 223
BveI ACCTGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 37, 266
CviJI RGCY 2 cut(s) 47, 263
CviKI_1 RGCY 2 cut(s) 47, 263
CviQI GTAC 1 cut(s) 182
DpnI GATC 3 cut(s) 61, 80, 279
DpnII GATC 3 cut(s) 59, 78, 277
EcoT22I ATGCAT 1 cut(s) 38
FaeI CATG 2 cut(s) 40, 269
FatI CATG 2 cut(s) 36, 265
FauNDI CATATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 71, 93
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 40, 269
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 4, 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 2 cut(s) 40, 269
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 3 cut(s) 59, 78, 277
LpnPI CCDG 2 cut(s) 30, 102
MaeI CTAG 2 cut(s) 71, 93
MaeIII GTNAC 2 cut(s) 166, 286
MalI GATC 3 cut(s) 61, 80, 279
MboI GATC 3 cut(s) 59, 78, 277
MboII GAAGA 1 cut(s) 152
MflI RGATCY 1 cut(s) 59
MluCI AATT 3 cut(s) 5, 122, 270
MnlI CCTC 1 cut(s) 100
Mph1103I ATGCAT 1 cut(s) 38
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeI CATATG 1 cut(s) 114
NdeII GATC 3 cut(s) 59, 78, 277
NlaIII CATG 2 cut(s) 40, 269
NmuCI GTSAC 2 cut(s) 166, 286
NsiI ATGCAT 1 cut(s) 38
PkrI GCNGC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 59
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 3 cut(s) 59, 78, 277
SetI ASST 2 cut(s) 91, 265
Sse9I AATT 3 cut(s) 5, 122, 270
SsiI CCGC 2 cut(s) 48, 137
SspMI CTAG 2 cut(s) 71, 93
TaaI ACNGT 1 cut(s) 166
TasI AATT 3 cut(s) 5, 122, 270
TatI WGTACW 1 cut(s) 181
TauI GCSGC 1 cut(s) 50
TseFI GTSAC 2 cut(s) 166, 286
Tsp45I GTSAC 2 cut(s) 166, 286
XapI RAATTY 1 cut(s) 122
XspI CTAG 2 cut(s) 71, 93
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.