Rh7BG091900

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016617
Physical Location & Seq
Forward (+)
6781453 .. 6782383
931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG091900.1

Sequence Viewer

Length: 288 bp
ATGGGATCTTTTATTCTTGTTGGAGGGGAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGGTAATGATCCATCAACCTGCTAGTTCTTTTTATGAGGCACAGACGGGAGAATTTGTCCTGGAAGCGGAAGAACTGTTGAAGCTGCGCGAAACCATCACAAGGGTTTATGCACAAAGGACAGGCAAACCCCTATGGGTTGTATCCAAAGACATGGAAAGAGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

95

Amino Acids

10.65

Weight (kDa)

5.58

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 1 - 94 9.9e-29 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 128
AclWI GGATC 2 cut(s) 13, 64
AcsI RAATTY 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 127, 162
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 2 cut(s) 145, 254
AluI AGCT 2 cut(s) 145, 254
AlwI GGATC 2 cut(s) 13, 64
Ama87I CYCGRG 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 113
AspLEI GCGC 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 60
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 81, 164
BciT130I CCWGG 1 cut(s) 122
BciVI GTATCC 1 cut(s) 214
BfaI CTAG 2 cut(s) 44, 84
BfuAI ACCTGC 1 cut(s) 88
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 162
BseBI CCWGG 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 127, 162
BseXI GCAGC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 127, 162
BsmI GAATGC 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 3 cut(s) 5, 69, 268
BspACI CCGC 1 cut(s) 128
BspFNI CGCG 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 13, 64
BssMI GATC 3 cut(s) 5, 69, 268
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 138
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 3 cut(s) 8, 72, 271
BstMBI GATC 3 cut(s) 5, 69, 268
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 5
BstXI CCANNNNNNTGG 2 cut(s) 214, 257
BstYI RGATCY 1 cut(s) 5
BsuI GTATCC 1 cut(s) 214
BveI ACCTGC 1 cut(s) 88
CfoI GCGC 1 cut(s) 150
CviAII CATG 2 cut(s) 214, 257
CviJI RGCY 3 cut(s) 145, 248, 254
CviKI_1 RGCY 3 cut(s) 145, 248, 254
DpnI GATC 3 cut(s) 7, 71, 270
DpnII GATC 3 cut(s) 5, 69, 268
Eco88I CYCGRG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 217, 260
FaiI YATR 6 cut(s) 96, 171, 196, 215, 233, 258
FatI CATG 2 cut(s) 213, 256
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 2 cut(s) 44, 84
GlaI GCGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 217, 260
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 2 cut(s) 217, 260
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 5, 69, 268
LpnPI CCDG 4 cut(s) 93, 107, 134, 168
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 2 cut(s) 44, 84
MaeII ACGT 1 cut(s) 40
MalI GATC 3 cut(s) 7, 71, 270
MboI GATC 3 cut(s) 5, 69, 268
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 5
MluCI AATT 3 cut(s) 30, 113, 261
MnlI CCTC 3 cut(s) 17, 63, 91
MspR9I CCNGG 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 3 cut(s) 5, 69, 268
NlaIII CATG 2 cut(s) 217, 260
PctI GAATGC 1 cut(s) 47
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PsuI RGATCY 1 cut(s) 5
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 3 cut(s) 5, 69, 268
ScrFI CCNGG 1 cut(s) 122
SetI ASST 4 cut(s) 43, 82, 147, 256
Sse9I AATT 3 cut(s) 30, 113, 261
SsiI CCGC 1 cut(s) 128
SspMI CTAG 2 cut(s) 44, 84
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 43
TasI AATT 3 cut(s) 30, 113, 261
TseI GCWGC 1 cut(s) 145
XapI RAATTY 1 cut(s) 113
XspI CTAG 2 cut(s) 44, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.