Rh5DG458900

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016617
Physical Location & Seq
Forward (+)
72920385 .. 72920717
333 bp
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UTR
Exon/CDS
Intron
Rh5DG458900.1

Sequence Viewer

Length: 333 bp
ATGCATGTACGGTTGTTCAATTATATCTTTTTGATTATTCTTTATCTCCTCACTTTCATCATGCGAGATAGAAGAAACATTTTTTATGTTATATCATATATTATCAGGGTAATGATCCATCAACCTGCTAGTTCTTTTTACGAGGCACAGACAGGAGAATTTGTCCTGGAAGCGCAAGAGCTGCTGAAGCTGTGCGAAACCATCACAAGGGTTTATGCACAAAGGACAGGCAAACCCCTATGGGTTGTATCCGAAGACATGGAAAGAGATGTTTTTATGTCAGCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCAACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

110

Amino Acids

12.94

Weight (kDa)

5.57

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 36 - 109 2.5e-18 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 181, 190, 299
AluI AGCT 3 cut(s) 181, 190, 299
AlwI GGATC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 168
BccI CCATC 2 cut(s) 126, 209
BciT130I CCWGG 1 cut(s) 167
BciVI GTATCC 1 cut(s) 259
BfaI CTAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 167
BpiI GAAGAC 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 207
Bsp143I GATC 2 cut(s) 114, 313
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 109
BssMI GATC 2 cut(s) 114, 313
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 181
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 2 cut(s) 117, 316
BstMBI GATC 2 cut(s) 114, 313
BstMWI GCNNNNNNNGC 3 cut(s) 181, 187, 290
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 302
BsuI GTATCC 1 cut(s) 259
BveI ACCTGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 8
CviAII CATG 4 cut(s) 5, 61, 259, 302
CviJI RGCY 4 cut(s) 181, 190, 293, 299
CviKI_1 RGCY 4 cut(s) 181, 190, 293, 299
CviQI GTAC 1 cut(s) 8
DpnI GATC 2 cut(s) 116, 315
DpnII GATC 2 cut(s) 114, 313
Eco57I CTGAAG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 64, 262, 305
FatI CATG 4 cut(s) 4, 60, 258, 301
Fnu4HI GCNGC 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 182
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 175
Hin1II CATG 4 cut(s) 8, 64, 262, 305
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 4, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 187, 290
Hsp92II CATG 4 cut(s) 8, 64, 262, 305
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 2 cut(s) 114, 313
LpnPI CCDG 6 cut(s) 91, 138, 138, 152, 179, 213
Lsp1109I GCAGC 1 cut(s) 168
MaeI CTAG 1 cut(s) 129
MalI GATC 2 cut(s) 116, 315
MboI GATC 2 cut(s) 114, 313
MboII GAAGA 2 cut(s) 84, 266
MluCI AATT 3 cut(s) 19, 158, 306
MnlI CCTC 2 cut(s) 59, 136
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 181, 187, 290
NdeII GATC 2 cut(s) 114, 313
NlaIII CATG 4 cut(s) 8, 64, 262, 305
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 2 cut(s) 114, 313
ScrFI CCNGG 1 cut(s) 167
SetI ASST 4 cut(s) 127, 183, 192, 301
Sse9I AATT 3 cut(s) 19, 158, 306
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 12
TasI AATT 3 cut(s) 19, 158, 306
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 46
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 8
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.