Rh5DG458800

ATP-dependent Clp protease proteolytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016617
Physical Location & Seq
Forward (+)
72919486 .. 72919851
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG458800.1

Sequence Viewer

Length: 366 bp
ATGATTTTTGTTGAACCGTATGCATCAAAAGGTGCATGTACGGTTTCTAAGGGATATCATTTTATCCCAATCAACCGACTTTATCGAGAAAGATTACTTTTTTTAGGCCAAGGGGTTGATAGCGAGATCTCGAATCAACTTATTGGTCTTATGGTATATCTCAGCATAGAGGATGATACCAAAGATTTGTATTTGTTTATAAACTCTCCTGGCGGATGGGTAATACCCGGAGTAGCTATTTATGATACTATGCAATTTGTGCGACCAGATATACAGACAATATGCATGGGATTAGCCGCTTCGATGGGATCTTTTATTCTTGTTGGAAGGGAAATTACCAAACGTCTAGCATTCCCTCACGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

121

Amino Acids

13.52

Weight (kDa)

6.05

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 23 - 121 1.6e-35 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AciI CCGC 2 cut(s) 213, 297
AclWI GGATC 1 cut(s) 316
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 1 cut(s) 316
AoxI GGCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BccI CCATC 2 cut(s) 210, 298
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 347
BglII AGATCT 1 cut(s) 126
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 210, 228
BmrFI CCNGG 2 cut(s) 210, 228
BmsI GCATC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 178, 221
BseMII CTCAG 1 cut(s) 175
BshFI GGCC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 228
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 2 cut(s) 126, 308
BspACI CCGC 2 cut(s) 213, 297
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 126, 308
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 18, 43
BstAPI GCANNNNNTGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 48, 161
BstF5I GGATG 2 cut(s) 178, 221
BstKTI GATC 2 cut(s) 129, 311
BstMBI GATC 2 cut(s) 126, 308
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 208, 226
BstX2I RGATCY 2 cut(s) 126, 308
BstYI RGATCY 2 cut(s) 126, 308
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 178, 221
Csp6I GTAC 1 cut(s) 39
CviAII CATG 2 cut(s) 36, 286
CviJI RGCY 3 cut(s) 108, 236, 296
CviKI_1 RGCY 3 cut(s) 108, 236, 296
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 2 cut(s) 48, 161
DpnI GATC 2 cut(s) 128, 310
DpnII GATC 2 cut(s) 126, 308
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 109
Eco32I GATATC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 2 cut(s) 25, 287
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 2 cut(s) 39, 289
FatI CATG 2 cut(s) 35, 285
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 2 cut(s) 185, 228
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 347
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 228
Hin1II CATG 2 cut(s) 39, 289
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 86, 130
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 18, 43
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 4 cut(s) 23, 35, 253, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 2 cut(s) 48, 161
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 2 cut(s) 39, 289
Kzo9I GATC 2 cut(s) 126, 308
LpnPI CCDG 4 cut(s) 195, 222, 241, 279
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 343
MalI GATC 2 cut(s) 128, 310
MboI GATC 2 cut(s) 126, 308
MflI RGATCY 2 cut(s) 126, 308
MluCI AATT 2 cut(s) 254, 333
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 2 cut(s) 163, 366
Mph1103I ATGCAT 2 cut(s) 25, 287
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 210, 228
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 259
NciI CCSGG 1 cut(s) 228
NdeII GATC 2 cut(s) 126, 308
NlaIII CATG 2 cut(s) 39, 289
NsiI ATGCAT 2 cut(s) 25, 287
NspI RCATGY 1 cut(s) 39
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 298
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PsuI RGATCY 2 cut(s) 126, 308
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 126, 308
ScrFI CCNGG 2 cut(s) 210, 228
SetI ASST 3 cut(s) 34, 238, 346
SfaNI GCATC 1 cut(s) 32
Sse9I AATT 2 cut(s) 254, 333
SsiI CCGC 2 cut(s) 213, 297
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 208, 226
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 18, 43
TaiI ACGT 1 cut(s) 346
TaqI TCGA 3 cut(s) 85, 131, 302
TasI AATT 2 cut(s) 254, 333
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 133
XceI RCATGY 1 cut(s) 39
XspI CTAG 1 cut(s) 347
Zsp2I ATGCAT 2 cut(s) 25, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.