RchiOBHm_Chr6g0260431

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016617
Physical Location & Seq
Reverse (-)
15415108 .. 15420774
5667 bp
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UTR
Exon/CDS
Intron
PRQ23354

Sequence Viewer

Length: 306 bp
ATGATTTGCCAGTTTGATGAAATGGCATTTTCTGGATTTCCAGATTACCTAATGATCCAGTTCGACGGGATCTTCTATTCTTGTTGGAGGGGAAATTACCAAACTTCTTTTTATGAGGCACAGACGGGAGAATTTGTCCTGGAAGCGGAAGAGCTGTTGAAGCTGCGCGAAACCATCACAAGGGTTTATGCACAAAGGACAGGCAAACCCCTATGGGTTGTATCTGAAGACATGGAAAGAGATGTTTTTATGTCAGCAATAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGACTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

101

Amino Acids

11.73

Weight (kDa)

4.33

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 39 - 100 5.6e-14 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 168
AciI CCGC 1 cut(s) 146
AclWI GGATC 2 cut(s) 49, 77
AcsI RAATTY 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 145, 180
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 3 cut(s) 154, 163, 272
AluI AGCT 3 cut(s) 154, 163, 272
AlwI GGATC 2 cut(s) 49, 77
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 131
AspLEI GCGC 1 cut(s) 168
BbsI GAAGAC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 140
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 180
Bse1I ACTGG 2 cut(s) 10, 58
BseBI CCWGG 1 cut(s) 140
BseLI CCNNNNNNNGG 2 cut(s) 145, 180
BseNI ACTGG 2 cut(s) 10, 58
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 145, 180
Bsp143I GATC 3 cut(s) 54, 69, 286
BspACI CCGC 1 cut(s) 146
BspFNI CGCG 1 cut(s) 168
BspPI GGATC 2 cut(s) 49, 77
BspQI GCTCTTC 1 cut(s) 144
BsrI ACTGG 2 cut(s) 10, 58
BssMI GATC 3 cut(s) 54, 69, 286
Bst2UI CCWGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 144
BstFNI CGCG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 3 cut(s) 57, 72, 289
BstMBI GATC 3 cut(s) 54, 69, 286
BstMWI GCNNNNNNNGC 2 cut(s) 160, 263
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 1 cut(s) 69
CfoI GCGC 1 cut(s) 168
CviAII CATG 2 cut(s) 232, 275
CviJI RGCY 4 cut(s) 154, 163, 266, 272
CviKI_1 RGCY 4 cut(s) 154, 163, 266, 272
DpnI GATC 3 cut(s) 56, 71, 288
DpnII GATC 3 cut(s) 54, 69, 286
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 235, 278
FaiI YATR 6 cut(s) 114, 189, 214, 233, 251, 276
FatI CATG 2 cut(s) 231, 274
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
GlaI GCGC 1 cut(s) 167
GluI GCNGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 168
Hin1II CATG 2 cut(s) 235, 278
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 2 cut(s) 33, 41
Hpy99I CGWCG 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 263
Hsp92II CATG 2 cut(s) 235, 278
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 54, 69, 286
LguI GCTCTTC 1 cut(s) 144
LpnPI CCDG 7 cut(s) 18, 23, 54, 71, 125, 152, 186
Lsp1109I GCAGC 1 cut(s) 150
MalI GATC 3 cut(s) 56, 71, 288
MboI GATC 3 cut(s) 54, 69, 286
MboII GAAGA 3 cut(s) 64, 161, 239
MflI RGATCY 1 cut(s) 69
MluCI AATT 3 cut(s) 94, 131, 279
MmeI TCCRAC 1 cut(s) 65
MnlI CCTC 2 cut(s) 81, 109
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 160, 263
NdeII GATC 3 cut(s) 54, 69, 286
NlaIII CATG 2 cut(s) 235, 278
PciSI GCTCTTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 144
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 3 cut(s) 54, 69, 286
ScrFI CCNGG 1 cut(s) 140
SetI ASST 4 cut(s) 51, 156, 165, 274
Sse9I AATT 3 cut(s) 94, 131, 279
SsiI CCGC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 63
TasI AATT 3 cut(s) 94, 131, 279
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 33
XapI RAATTY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.