Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016617

Physical Location & Seq

Genomic Coordinates Forward (+)

352705 .. 353507

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1005500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCATGATTTGGTTAAAATTCACCAGCATTGTTACATGGTGATGATTGTATTAGTGCATACAGGTCTTGCAATTTATGATACGATGCAGTACATTCGGTCACCAATCAGTACCATTTGTTTGGGCCAAGCGGCATCAATGGCTTCTCTTCTCTTAGCTGCGGGCGCCAAGGGTGAGAGGCGGTCTCTCCCAAATGCTACAGTTATGATTCATCAGCCTTCAGGCGGGTACAGCGGACAGGCCAAAGATATGACAATTCACACGAAGCAGATTGTTCGTGTCTGGGATTCCCTTAATGCGTTGTACTCAAAGCATACGGGGCAACCAGTAGATATAATTGAGAAGAATATGGACAGGGATCATTTTATGACCCCAGAAGAGGCAAAGGCATTCGGAATCATTGATGAGGTGATTGATGAAAGACCGATGGCTCTGGTGACTGATGCTGTTGCCAATGATGGCAAAGAAAAGGATAAAAGTTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0009368 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050897 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

163

Amino Acids

17.92

Weight (kDa)

6.43

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	19 - 140	6.3e-53	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016617)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00670
malus_domestica	MD11G1294400.v1.1 MD13G1005500.v1.1 MD16G1020700.v1.1
pyrus_communis	pycom520g00310
rosa_chinensis	RchiOBHm_Chr6g0260431 RchiOBHm_Chr6g0260441 RchiOBHm_CPg0501991
rosa_rugosa	Rorug06G0485200
rosa_samantha	Rh5BG446400 Rh5CG468400 Rh5DG458800 Rh5DG458900 Rh7BG091900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	5 cut(s)	131, 161, 181, 225, 234
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	4 cut(s)	92, 112, 230, 305
AfiI	CCNNNNNNNGG	2 cut(s)	224, 379
AgsI	TTSAA	1 cut(s)	483
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	366
AoxI	GGCC	2 cut(s)	124, 240
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	6 cut(s)	14, 52, 93, 185, 421, 448
BanI	GGYRCC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	421, 452
BcgI	CGANNNNNNTGC	4 cut(s)	77, 111, 257, 291
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	2 cut(s)	132, 159
BlsI	GCNGC	2 cut(s)	133, 160
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	166
BmsI	GCATC	3 cut(s)	75, 143, 433
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 379
Bse1I	ACTGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	224, 379
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	2 cut(s)	126, 242
BshNI	GGYRCC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	224, 379
BsmAI	GTCTC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	126, 242
Bso31I	GGTCTC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	5 cut(s)	131, 161, 181, 225, 234
BspANI	GGCC	2 cut(s)	126, 242
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	153, 372
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	154
BstEII	GGTNACC	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 164, 231, 319
BstPI	GGTNACC	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	126, 242
Cac8I	GCNNGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	4 cut(s)	91, 111, 229, 304
CviAII	CATG	2 cut(s)	5, 37
CviJI	RGCY	6 cut(s)	126, 143, 158, 217, 242, 431
CviKI_1	RGCY	6 cut(s)	126, 143, 158, 217, 242, 431
CviQI	GTAC	4 cut(s)	91, 111, 229, 304
DdeI	CTNAG	1 cut(s)	154
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	2 cut(s)	153, 372
EarI	CTCTTC	2 cut(s)	153, 372
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	2 cut(s)	8, 40
FatI	CATG	2 cut(s)	4, 36
FauI	CCCGC	2 cut(s)	154, 218
Fnu4HI	GCNGC	2 cut(s)	132, 159
Fsp4HI	GCNGC	2 cut(s)	132, 159
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	132, 159
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	126, 242
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	8, 40
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	3 cut(s)	208, 287, 396
HphI	GGTGA	6 cut(s)	14, 52, 93, 185, 421, 448
Hpy188I	TCNGA	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	228
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	4 cut(s)	4, 58, 71, 88
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 164, 231, 319
HpyF3I	CTNAG	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	8, 40
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	38, 48, 207, 224, 268, 339, 340, 387, 419
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	3 cut(s)	75, 143, 433
MaeIII	GTNAC	3 cut(s)	32, 99, 436
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	3 cut(s)	140, 355, 389
MluCI	AATT	4 cut(s)	18, 72, 255, 336
Mly113I	GGCGCC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	171, 373, 400
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	15, 294
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	140, 164, 231, 319
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	8, 40
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	99, 436
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	208, 287, 396
PkrI	GCNGC	2 cut(s)	133, 160
PluTI	GGCGCC	1 cut(s)	168
PspEI	GGTNACC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	124
RsaI	GTAC	4 cut(s)	92, 112, 230, 305
RsaNI	GTAC	4 cut(s)	91, 111, 229, 304
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	15, 294
SatI	GCNGC	2 cut(s)	132, 159
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	124
SetI	ASST	3 cut(s)	67, 160, 411
SfaNI	GCATC	3 cut(s)	75, 143, 433
SfcI	CTRYAG	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	41
Sse9I	AATT	4 cut(s)	18, 72, 255, 336
SsiI	CCGC	5 cut(s)	131, 161, 181, 225, 234
SspDI	GGCGCC	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	202
TaqII	GACCGA	2 cut(s)	87, 439
TasI	AATT	4 cut(s)	18, 72, 255, 336
TatI	WGTACW	2 cut(s)	90, 303
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	208, 287, 396
Tru1I	TTAA	2 cut(s)	15, 294
Tru9I	TTAA	2 cut(s)	15, 294
TseFI	GTSAC	2 cut(s)	99, 436
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	2 cut(s)	99, 436
TspDTI	ATGAA	2 cut(s)	200, 432
XapI	RAATTY	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.