MD16G1020700.v1.1

ATP-dependent Clp protease proteolytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016617
Physical Location & Seq
Reverse (-)
1489376 .. 1489651
276 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1020700.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGCAAACGAGTGTCTATTTTTAAACTCTCTAAAAGATAAAGAAAGGACGGGGGCACCATACATGGTACTTCTCGACCGTGTCTTTAAGGGACAAGGGGTTGATAGCGAGATCTCGAATCAACTTATTGGTCTTATGGTATATCTTAGTATAGAGGATGATACCAAAGATCTATATTTGTTTATAAATTCTCCTAACAGATGGGTAATACCCAGAGTAGCTATTTTTGATTACTATGCAATTTGTGCCCACCATATATACAGACAATATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

92

Amino Acids

10.6

Weight (kDa)

5.52

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 27 - 82 4.8e-08 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 55
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 1 cut(s) 69
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
ApoI RAATTY 1 cut(s) 187
BaeGI GKGCMC 2 cut(s) 58, 250
BanI GGYRCC 1 cut(s) 55
BccI CCATC 1 cut(s) 195
BglII AGATCT 2 cut(s) 111, 169
BmiI GGNNCC 1 cut(s) 57
BseGI GGATG 1 cut(s) 163
BseSI GKGCMC 2 cut(s) 58, 250
Bsh1285I CGRYCG 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 58, 250
Bsp143I GATC 2 cut(s) 111, 169
BspLI GGNNCC 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 55
BssMI GATC 2 cut(s) 111, 169
Bst4CI ACNGT 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 114, 172
BstMBI GATC 2 cut(s) 111, 169
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSLI GKGCMC 2 cut(s) 58, 250
BstX2I RGATCY 2 cut(s) 111, 169
BstYI RGATCY 2 cut(s) 111, 169
BtsCI GGATG 1 cut(s) 163
Csp6I GTAC 1 cut(s) 68
CviAII CATG 1 cut(s) 64
CviJI RGCY 1 cut(s) 221
CviKI_1 RGCY 1 cut(s) 221
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 113, 171
DpnII GATC 2 cut(s) 111, 169
DraI TTTAAA 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 274
FaeI CATG 1 cut(s) 67
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 63
FokI GGATG 1 cut(s) 170
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 74, 115
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 239, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 2 cut(s) 111, 169
LpnPI CCDG 1 cut(s) 226
MalI GATC 2 cut(s) 113, 171
MboI GATC 2 cut(s) 111, 169
MflI RGATCY 2 cut(s) 111, 169
MhlI GDGCHC 2 cut(s) 58, 250
MluCI AATT 2 cut(s) 187, 240
MnlI CCTC 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 274
MseI TTAA 2 cut(s) 23, 87
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 2 cut(s) 111, 169
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 274
PfeI GAWTC 1 cut(s) 118
PflFI GACNNNGTC 1 cut(s) 80
PsiI TTATAA 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 2 cut(s) 111, 169
PsyI GACNNNGTC 1 cut(s) 80
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 23, 87
Sau3AI GATC 2 cut(s) 111, 169
SduI GDGCHC 2 cut(s) 58, 250
SetI ASST 1 cut(s) 223
SgeI CNNG 9 cut(s) 22, 63, 76, 86, 92, 107, 121, 127, 225
Sse9I AATT 2 cut(s) 187, 240
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 2 cut(s) 75, 116
TasI AATT 2 cut(s) 187, 240
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 2 cut(s) 23, 87
Tru9I TTAA 2 cut(s) 23, 87
Tth111I GACNNNGTC 1 cut(s) 80
XapI RAATTY 1 cut(s) 187
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.