Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003897

Physical Location & Seq

Genomic Coordinates Reverse (-)

84337 .. 85843

Gene Structure 1507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTGTGGGCAGCATCATTGTGGTAAAGGTCGTAATGCCAGAGGAATAATTACCGCAAGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGCAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAATATAGAAATCACACTTGGAAGGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAACGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTCGACCATCCCCATGGAGGTGGTGAAGGGAGGGCTCCAATTGGTAGAAAAAAACCCGTAACCCCCTGGGGTTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAAAAATATAGTGAGACTTTGATTCTTCGTCGCCGTAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L23 Ribosomal_L2_C

Protein Analysis

274

Amino Acids

29.86

Weight (kDa)

10.85

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 116	4.1e-35	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	123 - 249	4.1e-53	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00830 ATCG01310
fragaria_vesca	FvH4_c3g00170
pyrus_communis	pycom12397g00040 pycom12397g00160 pycom520g00580
rosa_chinensis	RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581
rosa_laevigata	RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100
rosa_roxburghii	Rroxscaffold_2G00119140
rosa_rugosa	RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1
rosa_samantha	Rh1AG125100 Rh3CG278100 Rh3CG278800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	54, 678
AciI	CCGC	2 cut(s)	144, 467
AclWI	GGATC	1 cut(s)	628
AcoI	YGGCCR	2 cut(s)	411, 507
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	692, 758
AjnI	CCWGG	1 cut(s)	740
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	275, 788
AlwI	GGATC	1 cut(s)	628
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	411, 507
ApeKI	GCWGC	2 cut(s)	100, 464
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	2 cut(s)	302, 710
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	535
AxyI	CCTNAGG	1 cut(s)	403
BaeI	ACNNNNGTAYC	4 cut(s)	327, 342, 360, 375
BanII	GRGCYC	1 cut(s)	712
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	112, 476
BccI	CCATC	2 cut(s)	281, 690
BceAI	ACGGC	3 cut(s)	35, 426, 798
BciT130I	CCWGG	1 cut(s)	742
BcoDI	GTCTC	2 cut(s)	275, 788
BfaI	CTAG	3 cut(s)	459, 635, 771
BfmI	CTRYAG	2 cut(s)	474, 648
BisI	GCNGC	2 cut(s)	101, 465
BlpI	GCTNAGC	1 cut(s)	559
BlsI	GCNGC	2 cut(s)	102, 466
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	2 cut(s)	49, 711
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	559
BsaJI	CCNNGG	3 cut(s)	688, 740, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 758
Bse21I	CCTNAGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	3 cut(s)	688, 740, 741
BseGI	GGATG	3 cut(s)	292, 310, 682
BseLI	CCNNNNNNNGG	2 cut(s)	692, 758
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	672
BseXI	GCAGC	2 cut(s)	112, 476
BsgI	GTGCAG	1 cut(s)	738
BshFI	GGCC	2 cut(s)	413, 509
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	692, 758
BsmAI	GTCTC	2 cut(s)	275, 788
BsnI	GGCC	2 cut(s)	413, 509
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	38, 712
Bsp143I	GATC	2 cut(s)	90, 620
Bsp1720I	GCTNAGC	1 cut(s)	559
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	2 cut(s)	144, 467
BspANI	GGCC	2 cut(s)	413, 509
BspCNI	CTCAG	1 cut(s)	572
BspLI	GGNNCC	2 cut(s)	49, 711
BspPI	GGATC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	688, 740, 741
BssMI	GATC	2 cut(s)	90, 620
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	3 cut(s)	59, 182, 568
Bst6I	CTCTTC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	403, 559
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	292, 310, 682
BstKTI	GATC	2 cut(s)	93, 623
BstMAI	GTCTC	2 cut(s)	275, 788
BstMBI	GATC	2 cut(s)	90, 620
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 470
BstNI	CCWGG	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	740
BstSFI	CTRYAG	2 cut(s)	474, 648
BstV1I	GCAGC	2 cut(s)	112, 476
BstXI	CCANNNNNNTGG	2 cut(s)	689, 695
Bsu36I	CCTNAGG	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	413, 509
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	292, 310, 682
Cfr13I	GGNCC	1 cut(s)	535
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	689
CviJI	RGCY	8 cut(s)	50, 323, 413, 458, 509, 617, 634, 710
CviKI_1	RGCY	8 cut(s)	50, 323, 413, 458, 509, 617, 634, 710
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	403, 559
DpnI	GATC	2 cut(s)	92, 622
DpnII	GATC	2 cut(s)	90, 620
EaeI	YGGCCR	2 cut(s)	411, 507
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	688
Eco24I	GRGCYC	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	535
Eco81I	CCTNAGG	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	740
EcoRV	GATATC	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	688
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	688
FaeI	CATG	1 cut(s)	692
FatI	CATG	1 cut(s)	688
FauI	CCCGC	1 cut(s)	460
FblI	GTMKAC	2 cut(s)	54, 678
Fnu4HI	GCNGC	2 cut(s)	101, 465
FokI	GGATG	3 cut(s)	297, 299, 669
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	2 cut(s)	101, 465
FspBI	CTAG	3 cut(s)	459, 635, 771
GluI	GCNGC	2 cut(s)	101, 465
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	413, 509
HapII	CCGG	1 cut(s)	618
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	692
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	2 cut(s)	225, 802
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	2 cut(s)	302, 710
Hpy166II	GTNNAC	5 cut(s)	55, 449, 595, 641, 679
Hpy188I	TCNGA	1 cut(s)	572
Hpy188III	TCNNGA	1 cut(s)	528
Hpy8I	GTNNAC	5 cut(s)	55, 449, 595, 641, 679
Hpy99I	CGWCG	2 cut(s)	201, 813
HpyAV	CCTTC	3 cut(s)	435, 534, 695
HpyCH4III	ACNGT	3 cut(s)	59, 182, 568
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	4 cut(s)	206, 260, 491, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 470
HpyF3I	CTNAG	2 cut(s)	403, 559
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	1 cut(s)	692
Kzo9I	GATC	2 cut(s)	90, 620
LmnI	GCTCC	2 cut(s)	47, 715
Lsp1109I	GCAGC	2 cut(s)	112, 476
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	3 cut(s)	459, 635, 771
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	2 cut(s)	229, 733
MalI	GATC	2 cut(s)	92, 622
MboI	GATC	2 cut(s)	90, 620
MboII	GAAGA	4 cut(s)	307, 774, 777, 797
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	38, 712
MluCI	AATT	6 cut(s)	85, 138, 327, 452, 518, 714
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	9 cut(s)	125, 149, 155, 311, 490, 526, 650, 686, 699
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	3 cut(s)	108, 687, 693
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	1 cut(s)	742
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	2 cut(s)	464, 470
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	2 cut(s)	90, 620
NlaIII	CATG	1 cut(s)	692
NlaIV	GGNNCC	2 cut(s)	49, 711
NsiI	ATGCAT	1 cut(s)	262
PasI	CCCWGGG	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	225, 802
PkrI	GCNGC	2 cut(s)	102, 466
Psp6I	CCWGG	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	49, 711
PspPI	GGNCC	1 cut(s)	535
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	3 cut(s)	108, 687, 693
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	101, 465
Sau3AI	GATC	2 cut(s)	90, 620
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	2 cut(s)	38, 712
SetI	ASST	9 cut(s)	121, 166, 388, 460, 526, 537, 640, 646, 697
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	2 cut(s)	474, 648
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	3 cut(s)	108, 687, 693
Sse9I	AATT	6 cut(s)	85, 138, 327, 452, 518, 714
SsiI	CCGC	2 cut(s)	144, 467
SspMI	CTAG	3 cut(s)	459, 635, 771
StyD4I	CCNGG	1 cut(s)	740
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	3 cut(s)	59, 182, 568
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	4 cut(s)	196, 253, 623, 678
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	6 cut(s)	85, 138, 327, 452, 518, 714
TfiI	GAWTC	2 cut(s)	225, 802
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TseI	GCWGC	2 cut(s)	100, 464
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	535
XmiI	GTMKAC	2 cut(s)	54, 678
XspI	CTAG	3 cut(s)	459, 635, 771
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.