50S ribosomal protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00830 ATCG01310 |
| fragaria_vesca | FvH4_c3g00170 |
| pyrus_communis | pycom12397g00040 pycom12397g00160 pycom520g00580 |
| rosa_chinensis | RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581 |
| rosa_laevigata | RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100 |
| rosa_roxburghii | Rroxscaffold_2G00119140 |
| rosa_rugosa | RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1 |
| rosa_samantha | Rh1AG125100 Rh3CG278100 Rh3CG278800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 942, 1572, 2170 |
| AccI | GTMKAC | 2 cut(s) | 1753, 2089 |
| AciI | CCGC | 1 cut(s) | 351 |
| AclI | AACGTT | 2 cut(s) | 1823, 2158 |
| AcoI | YGGCCR | 2 cut(s) | 72, 1867 |
| AcsI | RAATTY | 8 cut(s) | 281, 630, 824, 845, 1906, 1917, 2098, 2270 |
| AfaI | GTAC | 5 cut(s) | 917, 1012, 1075, 1246, 2248 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 311, 377, 942, 1157, 1572, 2170, 2228 |
| AflIII | ACRYGT | 3 cut(s) | 2092, 2124, 2241 |
| AjnI | CCWGG | 4 cut(s) | 359, 972, 1360, 1673 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 81, 113 |
| AluBI | AGCT | 9 cut(s) | 119, 543, 551, 566, 699, 1037, 1426, 1600, 2027 |
| AluI | AGCT | 9 cut(s) | 119, 543, 551, 566, 699, 1037, 1426, 1600, 2027 |
| Alw21I | GWGCWC | 1 cut(s) | 2221 |
| Alw26I | GTCTC | 3 cut(s) | 654, 1251, 2074 |
| Ama87I | CYCGRG | 1 cut(s) | 1261 |
| AoxI | GGCC | 5 cut(s) | 72, 327, 1724, 1867, 2208 |
| ApaI | GGGCCC | 1 cut(s) | 331 |
| ApeKI | GCWGC | 3 cut(s) | 1304, 1600, 1679 |
| ApoI | RAATTY | 8 cut(s) | 281, 630, 824, 845, 1906, 1917, 2098, 2270 |
| AseI | ATTAAT | 1 cut(s) | 1785 |
| AspS9I | GGNCC | 5 cut(s) | 196, 298, 327, 328, 2209 |
| AsuHPI | GGTGA | 3 cut(s) | 265, 329, 1544 |
| AsuNHI | GCTAGC | 1 cut(s) | 2023 |
| AvaI | CYCGRG | 1 cut(s) | 1261 |
| AvaII | GGWCC | 2 cut(s) | 196, 298 |
| AxyI | CCTNAGG | 1 cut(s) | 2018 |
| BaeGI | GKGCMC | 2 cut(s) | 331, 1503 |
| BalI | TGGCCA | 2 cut(s) | 74, 1869 |
| BanII | GRGCYC | 1 cut(s) | 331 |
| BbsI | GAAGAC | 1 cut(s) | 1289 |
| Bbv12I | GWGCWC | 1 cut(s) | 2221 |
| BbvI | GCAGC | 3 cut(s) | 1316, 1587, 1666 |
| BccI | CCATC | 3 cut(s) | 309, 712, 2000 |
| BceAI | ACGGC | 1 cut(s) | 417 |
| BciT130I | CCWGG | 4 cut(s) | 361, 974, 1362, 1675 |
| BcoDI | GTCTC | 3 cut(s) | 654, 1251, 2074 |
| BfaI | CTAG | 6 cut(s) | 120, 696, 929, 948, 1550, 2024 |
| BfmI | CTRYAG | 1 cut(s) | 472 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 989 |
| BglII | AGATCT | 1 cut(s) | 950 |
| BisI | GCNGC | 3 cut(s) | 1305, 1601, 1680 |
| BlpI | GCTNAGC | 1 cut(s) | 220 |
| BlsI | GCNGC | 3 cut(s) | 1306, 1602, 1681 |
| Bme1390I | CCNGG | 4 cut(s) | 361, 974, 1362, 1675 |
| Bme18I | GGWCC | 2 cut(s) | 196, 298 |
| BmeT110I | CYCGRG | 1 cut(s) | 1261 |
| BmgT120I | GGNCC | 5 cut(s) | 196, 298, 327, 328, 2209 |
| BmiI | GGNNCC | 2 cut(s) | 329, 330 |
| BmrFI | CCNGG | 4 cut(s) | 361, 974, 1362, 1675 |
| BmsI | GCATC | 1 cut(s) | 565 |
| BmtI | GCTAGC | 1 cut(s) | 2027 |
| BpiI | GAAGAC | 1 cut(s) | 1289 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 220 |
| BpuEI | CTTGAG | 1 cut(s) | 1039 |
| BsaAI | YACGTR | 1 cut(s) | 1949 |
| BsaI | GGTCTC | 1 cut(s) | 2074 |
| BsaJI | CCNNGG | 7 cut(s) | 359, 360, 587, 973, 1571, 1647, 1674 |
| BsaWI | WCCGGW | 1 cut(s) | 2228 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 311, 377, 942, 1157, 1572, 2170, 2228 |
| Bse1I | ACTGG | 2 cut(s) | 1151, 1195 |
| Bse21I | CCTNAGG | 1 cut(s) | 2018 |
| Bse3DI | GCAATG | 1 cut(s) | 1506 |
| BseBI | CCWGG | 4 cut(s) | 361, 974, 1362, 1675 |
| BseDI | CCNNGG | 7 cut(s) | 359, 360, 587, 973, 1571, 1647, 1674 |
| BseGI | GGATG | 3 cut(s) | 301, 905, 1992 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 311, 377, 942, 1157, 1572, 2170, 2228 |
| BseMI | GCAATG | 1 cut(s) | 1506 |
| BseMII | CTCAG | 5 cut(s) | 234, 561, 1040, 1908, 2032 |
| BseNI | ACTGG | 2 cut(s) | 1151, 1195 |
| BseSI | GKGCMC | 2 cut(s) | 331, 1503 |
| BseXI | GCAGC | 3 cut(s) | 1316, 1587, 1666 |
| BsgI | GTGCAG | 1 cut(s) | 613 |
| BshFI | GGCC | 5 cut(s) | 74, 329, 1726, 1869, 2210 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2221 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1261 |
| BsiSI | CCGG | 1 cut(s) | 2229 |
| BslFI | GGGAC | 1 cut(s) | 1138 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 311, 377, 942, 1157, 1572, 2170, 2228 |
| BsmAI | GTCTC | 3 cut(s) | 654, 1251, 2074 |
| BsmFI | GGGAC | 1 cut(s) | 1138 |
| BsmI | GAATGC | 1 cut(s) | 1717 |
| BsnI | GGCC | 5 cut(s) | 74, 329, 1726, 1869, 2210 |
| Bso31I | GGTCTC | 1 cut(s) | 2074 |
| BsoBI | CYCGRG | 1 cut(s) | 1261 |
| Bsp120I | GGGCCC | 1 cut(s) | 327 |
| Bsp1286I | GDGCHC | 3 cut(s) | 331, 1503, 2221 |
| Bsp1407I | TGTACA | 1 cut(s) | 2246 |
| Bsp143I | GATC | 1 cut(s) | 950 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 220 |
| Bsp19I | CCATGG | 2 cut(s) | 587, 1571 |
| BspACI | CCGC | 1 cut(s) | 351 |
| BspANI | GGCC | 5 cut(s) | 74, 329, 1726, 1869, 2210 |
| BspCNI | CTCAG | 5 cut(s) | 233, 560, 1041, 1907, 2031 |
| BspLI | GGNNCC | 2 cut(s) | 329, 330 |
| BspOI | GCTAGC | 1 cut(s) | 2027 |
| BspTNI | GGTCTC | 1 cut(s) | 2074 |
| BsrDI | GCAATG | 1 cut(s) | 1506 |
| BsrGI | TGTACA | 1 cut(s) | 2246 |
| BsrI | ACTGG | 2 cut(s) | 1151, 1195 |
| BssECI | CCNNGG | 7 cut(s) | 359, 360, 587, 973, 1571, 1647, 1674 |
| BssMI | GATC | 1 cut(s) | 950 |
| BssT1I | CCWWGG | 3 cut(s) | 587, 1571, 1647 |
| Bst2UI | CCWGG | 4 cut(s) | 361, 974, 1362, 1675 |
| Bst4CI | ACNGT | 3 cut(s) | 229, 1210, 1688 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 131 |
| BstAUI | TGTACA | 1 cut(s) | 2246 |
| BstBAI | YACGTR | 1 cut(s) | 1949 |
| BstC8I | GCNNGC | 2 cut(s) | 1959, 2025 |
| BstDEI | CTNAG | 7 cut(s) | 220, 547, 727, 798, 1049, 1894, 2018 |
| BstDSI | CCRYGG | 2 cut(s) | 587, 1571 |
| BstEII | GGTNACC | 1 cut(s) | 1190 |
| BstF5I | GGATG | 3 cut(s) | 301, 905, 1992 |
| BstKTI | GATC | 1 cut(s) | 953 |
| BstMAI | GTCTC | 3 cut(s) | 654, 1251, 2074 |
| BstMBI | GATC | 1 cut(s) | 950 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 131, 989, 1723, 1958, 2216 |
| BstNI | CCWGG | 4 cut(s) | 361, 974, 1362, 1675 |
| BstNSI | RCATGY | 5 cut(s) | 1836, 1961, 2096, 2128, 2245 |
| BstPI | GGTNACC | 1 cut(s) | 1190 |
| BstSCI | CCNGG | 4 cut(s) | 359, 972, 1360, 1673 |
| BstSFI | CTRYAG | 1 cut(s) | 472 |
| BstSLI | GKGCMC | 2 cut(s) | 331, 1503 |
| BstV1I | GCAGC | 3 cut(s) | 1316, 1587, 1666 |
| BstV2I | GAAGAC | 1 cut(s) | 1289 |
| BstX2I | RGATCY | 1 cut(s) | 950 |
| BstYI | RGATCY | 1 cut(s) | 950 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2018 |
| BsuRI | GGCC | 5 cut(s) | 74, 329, 1726, 1869, 2210 |
| BtgI | CCRYGG | 2 cut(s) | 587, 1571 |
| BtsCI | GGATG | 3 cut(s) | 301, 905, 1992 |
| Cac8I | GCNNGC | 2 cut(s) | 1959, 2025 |
| Cfr13I | GGNCC | 5 cut(s) | 196, 298, 327, 328, 2209 |
| CsiI | ACCWGGT | 1 cut(s) | 1360 |
| Csp6I | GTAC | 5 cut(s) | 916, 1011, 1074, 1245, 2247 |
| CviQI | GTAC | 5 cut(s) | 916, 1011, 1074, 1245, 2247 |
| DdeI | CTNAG | 7 cut(s) | 220, 547, 727, 798, 1049, 1894, 2018 |
| DpnI | GATC | 1 cut(s) | 952 |
| DpnII | GATC | 1 cut(s) | 950 |
| DraI | TTTAAA | 3 cut(s) | 55, 286, 1516 |
| EaeI | YGGCCR | 2 cut(s) | 72, 1867 |
| Eco130I | CCWWGG | 3 cut(s) | 587, 1571, 1647 |
| Eco24I | GRGCYC | 1 cut(s) | 331 |
| Eco31I | GGTCTC | 1 cut(s) | 2074 |
| Eco32I | GATATC | 1 cut(s) | 207 |
| Eco47I | GGWCC | 2 cut(s) | 196, 298 |
| Eco81I | CCTNAGG | 1 cut(s) | 2018 |
| Eco88I | CYCGRG | 1 cut(s) | 1261 |
| Eco91I | GGTNACC | 1 cut(s) | 1190 |
| EcoO109I | RGGNCCY | 2 cut(s) | 327, 328 |
| EcoO65I | GGTNACC | 1 cut(s) | 1190 |
| EcoRII | CCWGG | 4 cut(s) | 359, 972, 1360, 1673 |
| EcoRV | GATATC | 1 cut(s) | 207 |
| EcoT14I | CCWWGG | 3 cut(s) | 587, 1571, 1647 |
| EcoT38I | GRGCYC | 1 cut(s) | 331 |
| ErhI | CCWWGG | 3 cut(s) | 587, 1571, 1647 |
| FaqI | GGGAC | 1 cut(s) | 1138 |
| FauI | CCCGC | 1 cut(s) | 358 |
| FauNDI | CATATG | 1 cut(s) | 1145 |
| FblI | GTMKAC | 2 cut(s) | 1753, 2089 |
| Fnu4HI | GCNGC | 3 cut(s) | 1305, 1601, 1680 |
| FokI | GGATG | 3 cut(s) | 288, 892, 1979 |
| FriOI | GRGCYC | 1 cut(s) | 331 |
| Fsp4HI | GCNGC | 3 cut(s) | 1305, 1601, 1680 |
| FspBI | CTAG | 6 cut(s) | 120, 696, 929, 948, 1550, 2024 |
| GluI | GCNGC | 3 cut(s) | 1305, 1601, 1680 |
| HaeIII | GGCC | 5 cut(s) | 74, 329, 1726, 1869, 2210 |
| HapII | CCGG | 1 cut(s) | 2229 |
| HincII | GTYRAC | 1 cut(s) | 1827 |
| HindII | GTYRAC | 1 cut(s) | 1827 |
| HindIII | AAGCTT | 1 cut(s) | 1424 |
| HinfI | GANTC | 9 cut(s) | 421, 623, 647, 932, 1045, 1259, 1382, 1963, 2050 |
| HpaI | GTTAAC | 1 cut(s) | 1827 |
| HpaII | CCGG | 1 cut(s) | 2229 |
| HphI | GGTGA | 3 cut(s) | 265, 329, 1544 |
| Hpy188I | TCNGA | 3 cut(s) | 844, 1050, 2309 |
| Hpy188III | TCNNGA | 6 cut(s) | 929, 1762, 1896, 1914, 1967, 2078 |
| Hpy99I | CGWCG | 1 cut(s) | 432 |
| HpyAV | CCTTC | 9 cut(s) | 314, 478, 792, 867, 1392, 1513, 1714, 1938, 2017 |
| HpyCH4III | ACNGT | 3 cut(s) | 229, 1210, 1688 |
| HpyCH4IV | ACGT | 3 cut(s) | 1823, 1948, 2158 |
| HpyCH4V | TGCA | 8 cut(s) | 152, 578, 594, 607, 1304, 1452, 1803, 1957 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 131, 989, 1723, 1958, 2216 |
| HpyF3I | CTNAG | 7 cut(s) | 220, 547, 727, 798, 1049, 1894, 2018 |
| HpySE526I | ACGT | 3 cut(s) | 1823, 1948, 2158 |
| KspAI | GTTAAC | 1 cut(s) | 1827 |
| Kzo9I | GATC | 1 cut(s) | 950 |
| LmnI | GCTCC | 1 cut(s) | 2224 |
| Lsp1109I | GCAGC | 3 cut(s) | 1316, 1587, 1666 |
| LweI | GCATC | 1 cut(s) | 565 |
| MabI | ACCWGGT | 1 cut(s) | 1360 |
| MaeI | CTAG | 6 cut(s) | 120, 696, 929, 948, 1550, 2024 |
| MaeII | ACGT | 3 cut(s) | 1823, 1948, 2158 |
| MaeIII | GTNAC | 6 cut(s) | 441, 1082, 1190, 1616, 1980, 2280 |
| MalI | GATC | 1 cut(s) | 952 |
| MboI | GATC | 1 cut(s) | 950 |
| MboII | GAAGA | 6 cut(s) | 393, 396, 416, 1289, 1662, 2160 |
| MfeI | CAATTG | 1 cut(s) | 333 |
| MflI | RGATCY | 1 cut(s) | 950 |
| MhlI | GDGCHC | 3 cut(s) | 331, 1503, 2221 |
| MlsI | TGGCCA | 2 cut(s) | 74, 1869 |
| MluNI | TGGCCA | 2 cut(s) | 74, 1869 |
| MlyI | GAGTC | 4 cut(s) | 656, 1054, 1253, 1972 |
| MmeI | TCCRAC | 3 cut(s) | 211, 1844, 2086 |
| Mox20I | TGGCCA | 2 cut(s) | 74, 1869 |
| MscI | TGGCCA | 2 cut(s) | 74, 1869 |
| MslI | CAYNNNNRTG | 2 cut(s) | 312, 536 |
| Msp20I | TGGCCA | 2 cut(s) | 74, 1869 |
| MspI | CCGG | 1 cut(s) | 2229 |
| MspR9I | CCNGG | 4 cut(s) | 361, 974, 1362, 1675 |
| MunI | CAATTG | 1 cut(s) | 333 |
| Mva1269I | GAATGC | 1 cut(s) | 1717 |
| MvaI | CCWGG | 4 cut(s) | 361, 974, 1362, 1675 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 131, 989, 1723, 1958, 2216 |
| NcoI | CCATGG | 2 cut(s) | 587, 1571 |
| NdeI | CATATG | 1 cut(s) | 1145 |
| NdeII | GATC | 1 cut(s) | 950 |
| NheI | GCTAGC | 1 cut(s) | 2023 |
| NlaIV | GGNNCC | 2 cut(s) | 329, 330 |
| NmuCI | GTSAC | 3 cut(s) | 441, 1616, 1980 |
| NspI | RCATGY | 5 cut(s) | 1836, 1961, 2096, 2128, 2245 |
| PaeI | GCATGC | 1 cut(s) | 1961 |
| PasI | CCCWGGG | 1 cut(s) | 360 |
| PciI | ACATGT | 3 cut(s) | 2092, 2124, 2241 |
| PctI | GAATGC | 1 cut(s) | 1717 |
| PfeI | GAWTC | 5 cut(s) | 421, 623, 932, 1382, 2050 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 942, 1572, 2170 |
| PkrI | GCNGC | 3 cut(s) | 1306, 1602, 1681 |
| PleI | GAGTC | 4 cut(s) | 655, 1053, 1253, 1971 |
| PpsI | GAGTC | 4 cut(s) | 655, 1053, 1253, 1971 |
| Ppu21I | YACGTR | 1 cut(s) | 1949 |
| PscI | ACATGT | 3 cut(s) | 2092, 2124, 2241 |
| PshBI | ATTAAT | 1 cut(s) | 1785 |
| Psp1406I | AACGTT | 2 cut(s) | 1823, 2158 |
| Psp6I | CCWGG | 4 cut(s) | 359, 972, 1360, 1673 |
| PspEI | GGTNACC | 1 cut(s) | 1190 |
| PspGI | CCWGG | 4 cut(s) | 359, 972, 1360, 1673 |
| PspN4I | GGNNCC | 2 cut(s) | 329, 330 |
| PspOMI | GGGCCC | 1 cut(s) | 327 |
| PspPI | GGNCC | 5 cut(s) | 196, 298, 327, 328, 2209 |
| PsuI | RGATCY | 1 cut(s) | 950 |
| RsaI | GTAC | 5 cut(s) | 917, 1012, 1075, 1246, 2248 |
| RsaNI | GTAC | 5 cut(s) | 916, 1011, 1074, 1245, 2247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 312, 536 |
| SatI | GCNGC | 3 cut(s) | 1305, 1601, 1680 |
| Sau3AI | GATC | 1 cut(s) | 950 |
| Sau96I | GGNCC | 5 cut(s) | 196, 298, 327, 328, 2209 |
| SchI | GAGTC | 4 cut(s) | 656, 1054, 1253, 1972 |
| ScrFI | CCNGG | 4 cut(s) | 361, 974, 1362, 1675 |
| SduI | GDGCHC | 3 cut(s) | 331, 1503, 2221 |
| SexAI | ACCWGGT | 1 cut(s) | 1360 |
| SfaNI | GCATC | 1 cut(s) | 565 |
| SfcI | CTRYAG | 1 cut(s) | 472 |
| SinI | GGWCC | 2 cut(s) | 196, 298 |
| SmiI | ATTTAAAT | 1 cut(s) | 286 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 312, 536 |
| SmlI | CTYRAG | 1 cut(s) | 1018 |
| SmoI | CTYRAG | 1 cut(s) | 1018 |
| SphI | GCATGC | 1 cut(s) | 1961 |
| SsiI | CCGC | 1 cut(s) | 351 |
| SspI | AATATT | 1 cut(s) | 811 |
| SspMI | CTAG | 6 cut(s) | 120, 696, 929, 948, 1550, 2024 |
| StyD4I | CCNGG | 4 cut(s) | 359, 972, 1360, 1673 |
| StyI | CCWWGG | 3 cut(s) | 587, 1571, 1647 |
| SwaI | ATTTAAAT | 1 cut(s) | 286 |
| TaaI | ACNGT | 3 cut(s) | 229, 1210, 1688 |
| TaiI | ACGT | 3 cut(s) | 1826, 1951, 2161 |
| TaqI | TCGA | 5 cut(s) | 573, 895, 1089, 1102, 1915 |
| TatI | WGTACW | 3 cut(s) | 1010, 1244, 2246 |
| TfiI | GAWTC | 5 cut(s) | 421, 623, 932, 1382, 2050 |
| TseFI | GTSAC | 3 cut(s) | 441, 1616, 1980 |
| TseI | GCWGC | 3 cut(s) | 1304, 1600, 1679 |
| Tsp45I | GTSAC | 3 cut(s) | 441, 1616, 1980 |
| TspDTI | ATGAA | 7 cut(s) | 759, 774, 818, 1364, 1495, 1999, 2283 |
| TspGWI | ACGGA | 1 cut(s) | 188 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 942, 1572, 2170 |
| VpaK11BI | GGWCC | 2 cut(s) | 196, 298 |
| VspI | ATTAAT | 1 cut(s) | 1785 |
| XapI | RAATTY | 8 cut(s) | 281, 630, 824, 845, 1906, 1917, 2098, 2270 |
| XbaI | TCTAGA | 1 cut(s) | 928 |
| XceI | RCATGY | 5 cut(s) | 1836, 1961, 2096, 2128, 2245 |
| XmiI | GTMKAC | 2 cut(s) | 1753, 2089 |
| XspI | CTAG | 6 cut(s) | 120, 696, 929, 948, 1550, 2024 |