Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003897

Physical Location & Seq

Genomic Coordinates Reverse (-)

88380047 .. 88381552

Gene Structure 1506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037091

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTAGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACTATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTGAACCAGAAAAGTTTGGGTAAAGCCGGAGCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C Ribosomal_S19

Protein Analysis

309

Amino Acids

33.49

Weight (kDa)

10.29

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 116	4.1e-34	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	166 - 283	2e-49	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00830 ATCG01310
fragaria_vesca	FvH4_c3g00170
pyrus_communis	pycom12397g00040 pycom12397g00160 pycom520g00580
rosa_chinensis	RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581
rosa_laevigata	RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100
rosa_roxburghii	Rroxscaffold_2G00119140
rosa_rugosa	RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1
rosa_samantha	Rh1AG125100 Rh3CG278100 Rh3CG278800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	560
AccI	GTMKAC	2 cut(s)	54, 780
AciI	CCGC	2 cut(s)	144, 834
AcoI	YGGCCR	2 cut(s)	513, 609
AfaI	GTAC	2 cut(s)	352, 445
AfiI	CCNNNNNNNGG	2 cut(s)	794, 860
AgsI	TTSAA	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	3 cut(s)	440, 560, 725
AluI	AGCT	3 cut(s)	440, 560, 725
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	513, 609, 810
ApaI	GGGCCC	1 cut(s)	814
ApeKI	GCWGC	1 cut(s)	566
AspS9I	GGNCC	3 cut(s)	637, 810, 811
AsuHPI	GGTGA	3 cut(s)	302, 706, 812
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	637
AxyI	CCTNAGG	1 cut(s)	505
BaeGI	GKGCMC	1 cut(s)	814
BaeI	ACNNNNGTAYC	4 cut(s)	327, 342, 360, 375
BanII	GRGCYC	1 cut(s)	814
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	2 cut(s)	281, 792
BceAI	ACGGC	4 cut(s)	35, 406, 528, 900
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	561, 737
BfmI	CTRYAG	4 cut(s)	234, 576, 750, 777
BfuAI	ACCTGC	1 cut(s)	560
BisI	GCNGC	1 cut(s)	567
BlpI	GCTNAGC	1 cut(s)	661
BlsI	GCNGC	1 cut(s)	568
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	637, 810, 811
BmiI	GGNNCC	3 cut(s)	49, 812, 813
BmsI	GCATC	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	661
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	790, 842
Bsc4I	CCNNNNNNNGG	2 cut(s)	794, 860
Bse21I	CCTNAGG	1 cut(s)	505
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	790, 842
BseGI	GGATG	4 cut(s)	292, 310, 410, 784
BseLI	CCNNNNNNNGG	2 cut(s)	794, 860
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	675
BseRI	GAGGAG	1 cut(s)	774
BseSI	GKGCMC	1 cut(s)	814
BseXI	GCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	840
BshFI	GGCC	3 cut(s)	515, 611, 812
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	720
BslI	CCNNNNNNNGG	2 cut(s)	794, 860
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	515, 611, 812
BsoBI	CYCGRG	1 cut(s)	31
Bsp120I	GGGCCC	1 cut(s)	810
Bsp1286I	GDGCHC	2 cut(s)	38, 814
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	90, 469
Bsp1720I	GCTNAGC	1 cut(s)	661
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	2 cut(s)	144, 834
BspANI	GGCC	3 cut(s)	515, 611, 812
BspCNI	CTCAG	1 cut(s)	674
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	49, 812, 813
BspMI	ACCTGC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	790, 842
BssMI	GATC	2 cut(s)	90, 469
BssT1I	CCWWGG	2 cut(s)	790, 842
Bst4CI	ACNGT	4 cut(s)	59, 182, 448, 670
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	505, 661
BstDSI	CCRYGG	1 cut(s)	790
BstF5I	GGATG	4 cut(s)	292, 310, 410, 784
BstKTI	GATC	2 cut(s)	93, 472
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	90, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 572, 742
BstSFI	CTRYAG	4 cut(s)	234, 576, 750, 777
BstSLI	GKGCMC	1 cut(s)	814
BstV1I	GCAGC	1 cut(s)	578
BstXI	CCANNNNNNTGG	2 cut(s)	791, 797
Bsu15I	ATCGAT	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	505
BsuRI	GGCC	3 cut(s)	515, 611, 812
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	790
BtsCI	GGATG	4 cut(s)	292, 310, 410, 784
BveI	ACCTGC	1 cut(s)	560
CaiI	CAGNNNCTG	1 cut(s)	575
Cfr13I	GGNCC	3 cut(s)	637, 810, 811
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	2 cut(s)	161, 734
Csp6I	GTAC	2 cut(s)	351, 444
CviAII	CATG	1 cut(s)	791
CviQI	GTAC	2 cut(s)	351, 444
DdeI	CTNAG	2 cut(s)	505, 661
DpnI	GATC	2 cut(s)	92, 471
DpnII	GATC	2 cut(s)	90, 469
EaeI	YGGCCR	2 cut(s)	513, 609
Eco130I	CCWWGG	2 cut(s)	790, 842
Eco24I	GRGCYC	1 cut(s)	814
Eco32I	GATATC	2 cut(s)	399, 648
Eco47I	GGWCC	1 cut(s)	637
Eco81I	CCTNAGG	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	810, 811
EcoRV	GATATC	2 cut(s)	399, 648
EcoT14I	CCWWGG	2 cut(s)	790, 842
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	814
ErhI	CCWWGG	2 cut(s)	790, 842
FaeI	CATG	1 cut(s)	794
FatI	CATG	1 cut(s)	790
FauI	CCCGC	1 cut(s)	841
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	2 cut(s)	54, 780
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	4 cut(s)	297, 299, 397, 771
FriOI	GRGCYC	1 cut(s)	814
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	2 cut(s)	561, 737
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	3 cut(s)	515, 611, 812
HapII	CCGG	1 cut(s)	720
HgaI	GACGC	2 cut(s)	161, 734
Hin1II	CATG	1 cut(s)	794
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	4 cut(s)	135, 225, 482, 904
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	3 cut(s)	302, 706, 812
Hpy166II	GTNNAC	4 cut(s)	55, 551, 697, 781
Hpy188I	TCNGA	1 cut(s)	674
Hpy188III	TCNNGA	1 cut(s)	414
Hpy8I	GTNNAC	4 cut(s)	55, 551, 697, 781
Hpy99I	CGWCG	2 cut(s)	201, 915
HpyAV	CCTTC	3 cut(s)	449, 636, 797
HpyCH4III	ACNGT	4 cut(s)	59, 182, 448, 670
HpyCH4V	TGCA	3 cut(s)	260, 593, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 572, 742
HpyF3I	CTNAG	2 cut(s)	505, 661
Hsp92II	CATG	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	90, 469
LmnI	GCTCC	2 cut(s)	47, 722
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	561, 737
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	92, 471
MboI	GATC	2 cut(s)	90, 469
MboII	GAAGA	5 cut(s)	446, 491, 876, 879, 899
MfeI	CAATTG	1 cut(s)	816
MhlI	GDGCHC	2 cut(s)	38, 814
MluCI	AATT	6 cut(s)	85, 327, 554, 620, 816, 898
MmeI	TCCRAC	1 cut(s)	652
MnlI	CCTC	8 cut(s)	125, 149, 155, 311, 592, 628, 752, 801
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	2 cut(s)	789, 795
MspI	CCGG	1 cut(s)	720
MunI	CAATTG	1 cut(s)	816
MwoI	GCNNNNNNNGC	3 cut(s)	566, 572, 742
NcoI	CCATGG	1 cut(s)	790
NdeII	GATC	2 cut(s)	90, 469
NlaIII	CATG	1 cut(s)	794
NlaIV	GGNNCC	3 cut(s)	49, 812, 813
NsiI	ATGCAT	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	560
PfeI	GAWTC	4 cut(s)	135, 225, 482, 904
PkrI	GCNGC	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	49, 812, 813
PspOMI	GGGCCC	1 cut(s)	810
PspPI	GGNCC	3 cut(s)	637, 810, 811
PstNI	CAGNNNCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	352, 445
RsaNI	GTAC	2 cut(s)	351, 444
RseI	CAYNNNNRTG	2 cut(s)	789, 795
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	2 cut(s)	90, 469
Sau96I	GGNCC	3 cut(s)	637, 810, 811
SduI	GDGCHC	2 cut(s)	38, 814
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	4 cut(s)	234, 576, 750, 777
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	2 cut(s)	789, 795
Sse9I	AATT	6 cut(s)	85, 327, 554, 620, 816, 898
SsiI	CCGC	2 cut(s)	144, 834
SspMI	CTAG	2 cut(s)	561, 737
StyI	CCWWGG	2 cut(s)	790, 842
TaaI	ACNGT	4 cut(s)	59, 182, 448, 670
TaqI	TCGA	3 cut(s)	189, 196, 253
TasI	AATT	6 cut(s)	85, 327, 554, 620, 816, 898
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	4 cut(s)	135, 225, 482, 904
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	219, 785
TspGWI	ACGGA	2 cut(s)	214, 629
VpaK11BI	GGWCC	1 cut(s)	637
XmiI	GTMKAC	2 cut(s)	54, 780
XspI	CTAG	2 cut(s)	561, 737
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.